View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13653_high_15 (Length: 279)
Name: NF13653_high_15
Description: NF13653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13653_high_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 23 - 264
Target Start/End: Complemental strand, 52876629 - 52876388
Alignment:
| Q |
23 |
tcatggatttgtcttgtttcatcaattagagtcggttaatgacatgtttaaagaaaacaaattaaatctcatacaattatcaatatgagtaatatattcc |
122 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52876629 |
tcatggatttgttttgtttcatcaattagagtcggttaatgacatgtttaaagaaaacaaattaaatctcatacaattatcaatatgagtaatatattcc |
52876530 |
T |
|
| Q |
123 |
aaagtttgtctctttgtcttaaagttttagtgcataaattgcaatgataatagaaattgtgttggtactagaaacttctacttacaagaacatcttggcc |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
52876529 |
aaagtttgtctctttgtcttaaagttttagtgcataaattgcaatgataatagaaattgtattggtactagaaacttccacttacaagaacatcttggcc |
52876430 |
T |
|
| Q |
223 |
aaaccatgaaaatgattctcgtcgagtagcagcccatattat |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52876429 |
aaaccatgaaaatgattctcgtcgagtagcagcccatattat |
52876388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University