View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13653_high_2 (Length: 639)
Name: NF13653_high_2
Description: NF13653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13653_high_2 |
 | |
|
| [»] scaffold0263 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 6 - 630
Target Start/End: Original strand, 42594489 - 42595121
Alignment:
| Q |
6 |
ataatgaaaaggagaatattctgccaaaaaacgttgtggtgagtttagttccttcaattggttttttatactatgctagtcattgttcattctttttatg |
105 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42594489 |
ataatgaaaaggagaatattctgcctaaaaacgttgtggtgagtttagttccttgaattggttgtttatactatgctagtcattgttcattctttttatg |
42594588 |
T |
|
| Q |
106 |
gaagcatttagatacttctgttttaaggcgtacattaaaatactttttaaaaagaatatacctgtttagatggaacttagactt----tgtatagagaat |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42594589 |
gaagcatttagatacttctgttttaaggcgtacattaaaatactttttaaaaagaatatacctgtttagatggaacttagacttaatttgtatagagaat |
42594688 |
T |
|
| Q |
202 |
atgaattaccagttctacttataatttgatatttatctgagt---aggagagatctatgtgaatgatatcaacgaaactatatctgaaatagcaagcaat |
298 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42594689 |
atgaattaccagttcaacttataatttgatatttatctgagtctgaggagagatctatgtgaatgatatcaacgaatctatatctgaaatagcaagcaat |
42594788 |
T |
|
| Q |
299 |
tgcttaaacttgcttccatt---gtcagtgtacggtttaggattttagttagatgctattgtaatttgtaactatctatgtgagttcaaatttgaaaagt |
395 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42594789 |
tgcttaaacttgcttccatttctgacagtgtacggtttaggattttagttagatgctattgtaatttgtaactatctatgtgagttcaaatttgaaaagt |
42594888 |
T |
|
| Q |
396 |
tatatttggtattagttcataatgcctagatttccgtaaactgtgatgctgttatgttatgaaattgaacacatctatgttggatagttagtgttgaagc |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42594889 |
tatatttggtattagttcataatgcctagatttccgtaaacggtgatgctgttatgttatgaaattgaacacatctatgttggatagttagtgctgaagc |
42594988 |
T |
|
| Q |
496 |
ttatactgaacaatagtaaacccccaagtatgtgtaatgttaagtaaatttgttggactatcaaagttgaatcgttgtggtatcatgtacttttttccta |
595 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42594989 |
ttatactgaataatagtaaa--cccaagtatgtgtaatgttaagtaaatttgttggactatcaaagttgaatcgttgtggtatcatgtacttttttccta |
42595086 |
T |
|
| Q |
596 |
agaatcaatggcttatcttggaatggaagtataat |
630 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||| |
|
|
| T |
42595087 |
agaatcaatggcttattttggaattgaagtataat |
42595121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 2e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 447 - 618
Target Start/End: Complemental strand, 16179666 - 16179498
Alignment:
| Q |
447 |
ttatgttatgaaattgaacacatctatgttggatagttagtgttgaagcttatactgaacaatagtaaacccccaagtatgtgtaatgttaagtaaattt |
546 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| ||||||||||||||||||||| |
|
|
| T |
16179666 |
ttatgttatgaa-ttgaacacatctatgttggatagttagtgttgaagcttatactgaataatagtaaattc--aagtctgtgtaatgttaagtaaattt |
16179570 |
T |
|
| Q |
547 |
gttggactatcaaagttgaatcgttgtggtatcatgtacttttttcctaagaatcaatggcttatcttggaa |
618 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16179569 |
gttggattatcaaagttgaatcgttgtggtatcatgtacttttttcctaagaatcaatggcttattttggaa |
16179498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0263 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0263
Description:
Target: scaffold0263; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 409
Target Start/End: Original strand, 1643 - 1722
Alignment:
| Q |
331 |
tttaggattttagttagatgctattgtaatttgt-aactatctatgtgagttcaaatttgaaaagttatatttggtatta |
409 |
Q |
| |
|
|||||| |||||||||||| | ||||||| || |||| |||||| |||||||||||||||| |||||| ||||||||| |
|
|
| T |
1643 |
tttagggttttagttagataccattgtaaattaagaactgtctatgcgagttcaaatttgaaatgttataattggtatta |
1722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University