View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13653_high_5 (Length: 572)
Name: NF13653_high_5
Description: NF13653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13653_high_5 |
 | |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
| [»] scaffold0142 (1 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 202 - 553
Target Start/End: Complemental strand, 20246903 - 20246552
Alignment:
| Q |
202 |
aatcccaaggacatggaggaatacaaacccatgtgctattttgtaacaaatgatggctctaaaaatgatcaaaaatccatattcgaaaaacttgatgatt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20246903 |
aatcccaaggacatggaggaatacaaacccatgtgctattttgtaacaaatgatggctctaaaaatgatcaaaaatccatattcgaaaaacttgatgatt |
20246804 |
T |
|
| Q |
302 |
cgatgaagaatcatcttaaaactttgttcatccaagccaaagtggatgagattggtatcaacaaagtgttggtcgatggtggtgctgctgtaaatttgat |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20246803 |
cgatgaagaatcatcttaaaactttgttcatccaagccaaagtggatgagattggtatcaacaaagtgttggtcgatggtggtgctgctgtaaatttgat |
20246704 |
T |
|
| Q |
402 |
gcctcaatccttactcaaaatgattggtaagaccgacaaagatttgaagcctcataatgtaattttgtcaaattatgaaggaaaggatggtcattccctt |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20246703 |
gcctcaatccttactcaaaatgattggtaagaccgacaaagatttgaagcctcataatgtaattttgtcaaattatgaaggaaaggatggtcattccctt |
20246604 |
T |
|
| Q |
502 |
ggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgt |
553 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20246603 |
ggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgt |
20246552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 202 - 553
Target Start/End: Complemental strand, 22140887 - 22140536
Alignment:
| Q |
202 |
aatcccaaggacatggaggaatacaaacccatgtgctattttgtaacaaatgatggctctaaaaatgatcaaaaatccatattcgaaaaacttgatgatt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22140887 |
aatcccaaggacatggaggaatacaaacccatgtgctattttgtaacaaatgatggctctaaaaatgatcaaaaatccatattcgaaaaacttgatgatt |
22140788 |
T |
|
| Q |
302 |
cgatgaagaatcatcttaaaactttgttcatccaagccaaagtggatgagattggtatcaacaaagtgttggtcgatggtggtgctgctgtaaatttgat |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22140787 |
cgatgaagaatcatcttaaaactttgttcatccaagccaaagtggatgagattggtatcaacaaagtgttggtcgatggtggtgctgctgtaaatttgat |
22140688 |
T |
|
| Q |
402 |
gcctcaatccttactcaaaatgattggtaagaccgacaaagatttgaagcctcataatgtaattttgtcaaattatgaaggaaaggatggtcattccctt |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22140687 |
gcctcaatccttactcaaaatgattggtaagaccgacaaagatttgaagcctcataatgtaattttgtcaaattatgaaggaaaggatggtcattccctt |
22140588 |
T |
|
| Q |
502 |
ggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgt |
553 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22140587 |
ggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgt |
22140536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 404
Target Start/End: Original strand, 13778647 - 13778739
Alignment:
| Q |
312 |
tcatcttaaaactttgttcatccaagccaaagtggatgagattggtatcaacaaagtgttggtcgatggtggtgctgctgtaaatttgatgcc |
404 |
Q |
| |
|
||||||||| ||||||| |||||||| ||| | || | |||| || ||||||||| | |||||||||||||||||||||||||| |||| |
|
|
| T |
13778647 |
tcatcttaagcctttgtttatccaagctaaaatcaataatgttgggattaacaaagtgctcatcgatggtggtgctgctgtaaatttgttgcc |
13778739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 63 - 544
Target Start/End: Original strand, 11885020 - 11885501
Alignment:
| Q |
63 |
ggatcctgatgaagatgatgatttgggttcagattttatggattcagaaccggactttgacgtcatattcaacttgatttccatttttccagctgactat |
162 |
Q |
| |
|
||||||||||||||||||||| |||| |||||| || ||||||||| |||||||||| |||||||||| ||| | |||||||||| |||||||| ||| |
|
|
| T |
11885020 |
ggatcctgatgaagatgatgaattggattcagagttcatggattcaaaaccggacttcgacgtcatatgcaatgttgtttccattttgccagctgaatat |
11885119 |
T |
|
| Q |
163 |
gatatggtgtctgaagtcgaggattcagaggaagagttcaatcccaaggacatggaggaatacaaacccatgtgctattttgtaacaaatgatggctcta |
262 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||| || || |||||||||||| ||||| || |
|
|
| T |
11885120 |
gatatggtgtctgaagttgaggattcagaggaagagttcgatcccaaggatatggaggaatacaaacccatatggtactttgtaacaaataatggccctg |
11885219 |
T |
|
| Q |
263 |
aaaatgatcaaaaatccatattcgaaaaacttgatgattcgatgaagaatcatcttaaaactttgttcatccaagccaaagtggatgagattggtatcaa |
362 |
Q |
| |
|
|| || || ||| ||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
11885220 |
aagattattggaaagccatattcgaaaatcctgatgattcgatgaagaatcatcttaaacctttgttcatccaagccaaagtagatgagattggcatcaa |
11885319 |
T |
|
| Q |
363 |
caaagtgttggtcgatggtggtgctgctgtaaatttgatgcctcaatccttactcaaaatgattggtaagaccgacaaagatttgaagcctcataatgta |
462 |
Q |
| |
|
||||||||||||||| ||| ||||| |||| |||||||||||||| ||||||||||||| ||||| |||||||||||||| ||||||| |||||||||| |
|
|
| T |
11885320 |
caaagtgttggtcgacggttgtgctactgtcaatttgatgcctcagtccttactcaaaaggattgacaagaccgacaaagacttgaagcgtcataatgta |
11885419 |
T |
|
| Q |
463 |
attttgtcaaattatgaaggaaaggatggtcattcccttggtgctctccaagtgagtctaacggtgggaactgtggtcagac |
544 |
Q |
| |
|
||| ||||||||||||||||||||| | |||||| |||||||||||| |||||||||||||| ||||||| ||||||||||| |
|
|
| T |
11885420 |
attctgtcaaattatgaaggaaaggctagtcatttccttggtgctcttcaagtgagtctaacagtgggaattgtggtcagac |
11885501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 328 - 388
Target Start/End: Original strand, 18474043 - 18474103
Alignment:
| Q |
328 |
ttcatccaagccaaagtggatgagattggtatcaacaaagtgttggtcgatggtggtgctg |
388 |
Q |
| |
|
||||| ||||||||||| || |||||||| |||||||||| ||||| ||||| ||||||| |
|
|
| T |
18474043 |
ttcattcaagccaaagttgacgagattggagtcaacaaagtattggtagatggcggtgctg |
18474103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 17 - 479
Target Start/End: Complemental strand, 35078 - 34616
Alignment:
| Q |
17 |
gaagaagatcagcgaaataaaggtagtctcttcccctagtcaaagaggatcctgatgaagatgatgatttgggttcagattttatggattcagaaccgga |
116 |
Q |
| |
|
|||||||| |||||||| | |||||||||||||||||| ||||| | ||||||| ||||||||||| |||| |||||| |||||||||||||||| ||| |
|
|
| T |
35078 |
gaagaagaccagcgaaagagaggtagtctcttcccctattcaaaaataatcctgacgaagatgatgaattggattcagagtttatggattcagaactgga |
34979 |
T |
|
| Q |
117 |
ctttgacgtcatattcaacttgatttccatttttccagctgactatgatatggtgtctgaagtcgaggattcagaggaagagttcaatcccaaggacatg |
216 |
Q |
| |
|
||| |||||||||| ||| || |||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34978 |
cttcgacgtcatatgcaatgtggtttccattttgccagctgaatatgatatggtgtctgaagttgaggattcagaggaagagttcgatcccaaggacatg |
34879 |
T |
|
| Q |
217 |
gaggaatacaaacccatgtgctattttgtaacaaatgatggctctaaaaatgatcaaaaatccatattcgaaaaacttgatgattcgatgaagaatcatc |
316 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||| |||||| | | || | | ||||||||||||||||| | | ||| ||||||||||||||||| |
|
|
| T |
34878 |
gaggaatacaaccccatgtgctactttgtaacaaataatggctttgtagattaacggaaatccatattcgaaaagcctaatggttcgatgaagaatcatc |
34779 |
T |
|
| Q |
317 |
ttaaaactttgttcatccaagccaaagtggatgagattggtatcaacaaagtgttggtcgatggtggtgctgctgtaaatttgatgcctcaatccttact |
416 |
Q |
| |
|
||||| ||||| |||||||| |||| | |||||||||||||||||||||||||||||||| ||||||| || || |||||||||| |||||||||||| |
|
|
| T |
34778 |
ttaaacgtttgtccatccaaggcaaactagatgagattggtatcaacaaagtgttggtcgacggtggtgttgtcgtcaatttgatgcatcaatccttact |
34679 |
T |
|
| Q |
417 |
caaaatgattggtaagaccgacaaagatttgaagcctcataatgtaattttgtcaaattatga |
479 |
Q |
| |
|
||||| |||||||||||||| || |||||||||| ||| ||||||||| ||||||||||||| |
|
|
| T |
34678 |
caaaaggattggtaagaccggtaaggatttgaagcatcacaatgtaattctgtcaaattatga |
34616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 37 - 551
Target Start/End: Original strand, 24987915 - 24988426
Alignment:
| Q |
37 |
aggtagtctcttcccctagtcaaagaggatcctgatgaagatgatgatttgggttcagattttatggattcagaaccggactttgacgtcatattcaact |
136 |
Q |
| |
|
|||| ||||||||| ||||| | ||||||||| ||||||||||||| || || ||| |||| ||||||||||| ||||| || ||||||| ||| | |
|
|
| T |
24987915 |
aggttgtctcttcctttagtcgaggaggatcctaatgaagatgatgagttaggatcaagatttacagattcagaaccagacttcgatgtcatatgcaatt |
24988014 |
T |
|
| Q |
137 |
tgatttccatttttccagctgactatgatatggtgtctgaagtcgaggattcagaggaagagttcaatcccaaggacatggaggaatacaaacccatgtg |
236 |
Q |
| |
|
|| |||||||||| |||||||| ||||||||| | ||||||||||| ||||||||| || ||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
24988015 |
tggtttccattttaccagctgaatatgatatgatatctgaagtcgatgattcagagtaaaagttcgatcccaaggacatggaagaatacaaacccatgtg |
24988114 |
T |
|
| Q |
237 |
ctattttgtaacaaatgatggctctaaaaatgatcaaaaatccatattcgaaaaacttgatgattcgatgaagaatcatcttaaaactttgttcatccaa |
336 |
Q |
| |
|
||| || | | |||||| ||| || || |||| ||| ||||||| ||| | | ||||||||| ||||||| |||| ||||| |||||||||| ||| |
|
|
| T |
24988115 |
ctacttattga---atgatgtatctgaagataatcagaaagccatatttgaacagcctgatgattcaatgaagagtcatattaaacctttgttcattcaa |
24988211 |
T |
|
| Q |
337 |
gccaaagtggatgagattggtatcaacaaagtgttggtcgatggtggtgctgctgtaaatttgatgcctcaatccttactcaaaatgattggtaagaccg |
436 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||| |||| |||| |||||| ||||||| |
|
|
| T |
24988212 |
gccaaagtggatgatattggtatcaacaaagtgttgggcgatggtggtgctgctgtcaatctgatgcctcaatccctacttaaaaggattggcaagaccg |
24988311 |
T |
|
| Q |
437 |
acaaagatttgaagcctcataatgtaattttgtcaaattatgaaggaaaggatggtcattcccttggtgctctccaagtgagtctaacggtgggaactgt |
536 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||| ||||||||||||| |||||||||| | |
|
|
| T |
24988312 |
acaaagattttaagcctcataatgtaattcaatcaaattatgtaggaaaggctggtcattcccttggtgctcttcaagtgagtctaatggtgggaacttt |
24988411 |
T |
|
| Q |
537 |
ggtcagaccaacttt |
551 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
24988412 |
agtcataccaacttt |
24988426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 103 - 553
Target Start/End: Original strand, 25566944 - 25567390
Alignment:
| Q |
103 |
gattcagaaccggactttgacgtcatattcaacttgatttccatttttccagctgactatgatatggtgtctgaagtcgaggattcagaggaagagttca |
202 |
Q |
| |
|
||||||||||| ||||| || ||||||| || ||| ||||||| || ||||| || ||||||||| | ||||| || || | | || | ||||||||| |
|
|
| T |
25566944 |
gattcagaaccagacttagatgtcatatgtaatttggtttccatcttaccagccgaatatgatatgatatctgaggttgatgttgcaaatgaagagttcg |
25567043 |
T |
|
| Q |
203 |
atcccaaggacatggaggaatacaaacccatgtgctattttgtaacaaatgatggctctaaaaatgatcaaaaatccatattcgaaaaacttgatgattc |
302 |
Q |
| |
|
| | |||| ||||| || ||| ||||||||||||||||||| | ||||||||||| || || ||| ||| ||||||| ||| | || |||||||| |
|
|
| T |
25567044 |
aagcaaagg-catgggagagtaccaacccatgtgctattttgtga---atgatggctctgaagataatcgtaaagccatatttgaacagctagatgattc |
25567139 |
T |
|
| Q |
303 |
gatgaagaatcatcttaaaactttgttcatccaagccaaagtggatgagattggtatcaacaaagtgttggtcgatggtggtgctgctgtaaatttgatg |
402 |
Q |
| |
|
|||||||| |||||| ||| |||||||||||||| |||||||||||||| || ||| ||||||||||||||||| ||||||| || ||| ||| ||||| |
|
|
| T |
25567140 |
gatgaagagtcatctcaaacctttgttcatccaatccaaagtggatgaggttattattaacaaagtgttggtcgacggtggtgatgttgttaatctgatg |
25567239 |
T |
|
| Q |
403 |
cctcaatccttactcaaaatgattggtaagaccgacaaagatttgaagcctcataatgtaattttgtcaaattatgaaggaaaggatggtcattcccttg |
502 |
Q |
| |
|
||||||||||||||||||| | |||| |||||||||||| ||||||||||||||||| ||||| |||| | |||||||||||||| |||||||| ||||| |
|
|
| T |
25567240 |
cctcaatccttactcaaaaaggttggaaagaccgacaaaaatttgaagcctcataatctaattatgtcgagttatgaaggaaagggtggtcatttccttg |
25567339 |
T |
|
| Q |
503 |
gtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgt |
553 |
Q |
| |
|
|||| ||| ||| | |||||| |||||| |||| ||||||||||||| |
|
|
| T |
25567340 |
gtgcactcagagtatgcttaacggagggaaccatggttagaccaactttgt |
25567390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 494 - 553
Target Start/End: Complemental strand, 25582646 - 25582587
Alignment:
| Q |
494 |
attcccttggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaactttgt |
553 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25582646 |
attccattggtgctatccaagtgagtctaacggtgggaactatggtcagaccaactttgt |
25582587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 62 - 551
Target Start/End: Complemental strand, 4599273 - 4598787
Alignment:
| Q |
62 |
aggatcctgatgaagatgatgatttgggttcagattttatggattcagaaccggactttgacgtcatattcaacttgatttccatttttccagctgacta |
161 |
Q |
| |
|
|||||||| ||||||||||||| || || |||| |||| || ||| || | ||||| || ||||||| ||| ||| ||| | |||| ||||| || || |
|
|
| T |
4599273 |
aggatcctaatgaagatgatgagttaggatcaggatttacagagtcaaaatcagacttcgatgtcatatgcaatttggttttcgttttaccagccgaata |
4599174 |
T |
|
| Q |
162 |
tgatatggtgtctgaagtcgaggattcagaggaagagttcaatcccaaggacatggaggaatacaaacccatgtgctattttgtaacaaatgatggctct |
261 |
Q |
| |
|
||| ||| | |||||||| || |||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||| | || |||||| | |
|
|
| T |
4599173 |
tgacatgatatctgaagttgatgattcagaggaagagttcgatcccaagggaatggaggaatacagacccatgtgctattttgtga---ataatggctat |
4599077 |
T |
|
| Q |
262 |
aaaaatgatcaaaaatccatattcgaaaaacttgatgattcgatgaagaatcatcttaaaactttgttcatccaagccaaagtggatgagattggtatca |
361 |
Q |
| |
|
|| || ||| ||| ||||||| ||| | | |||||||||||||| ||||||||| ||| ||||||||||||||||||||||| ||||||| ||| | | |
|
|
| T |
4599076 |
gaagataatcggaaagccatatttgaacagcgtgatgattcgatgaggaatcatctcaaacctttgttcatccaagccaaagtgaatgagatcggtgtta |
4598977 |
T |
|
| Q |
362 |
acaaagtgttggtcgatggtggtgctgctgtaaatttgatgcctcaatccttactcaaaatgattggtaagaccgacaaagatttgaagcctcataatgt |
461 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||| ||||||||||||| |||||||||| |||||| ||||| ||||| |||||||||||||||| ||| |
|
|
| T |
4598976 |
acaaagtgttggtcgacggtggtgctgctgtcaatatgatgcctcaatctttactcaaaaggattggcaagactgacaatgatttgaagcctcatactgt |
4598877 |
T |
|
| Q |
462 |
aattttgtcaaattatgaaggaaaggatggtcattcccttggtgctctccaagtgagtctaacggtgggaactgtggtcagaccaacttt |
551 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||| ||||||||||||||| |||| |||||||||||||| |||| ||||||||||| |
|
|
| T |
4598876 |
gattctgtcaaattatgaaggaaaggctggtcattttcttggtgctctccaaatgagcctaacggtgggaaccatggttagaccaacttt |
4598787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 59 - 465
Target Start/End: Original strand, 18218039 - 18218442
Alignment:
| Q |
59 |
aagaggatcctgatgaagatgatgatttgggttcagattttatggattcagaaccggactttgacgtcatattcaacttgatttccatttttccagctga |
158 |
Q |
| |
|
||||||||||| ||||||||||||| || || |||| | | ||||||||||| ||||| | ||||||| ||| ||| |||||||||| || ||||| |
|
|
| T |
18218039 |
aagaggatcctaatgaagatgatgagttaggatcaggatattcagattcagaaccagacttcaatgtcatatgcaatttggtttccattttacccgctga |
18218138 |
T |
|
| Q |
159 |
ctatgatatggtgtctgaagtcgaggattcagaggaagagttcaatcccaaggacatggaggaatacaaacccatgtgctattttgtaacaaatgatggc |
258 |
Q |
| |
|
| ||||||| | || ||||| || |||||||||||||||||| ||||||| |||||||||||||| ||| |||||||||||||||| | || ||||| |
|
|
| T |
18218139 |
atttgatatgatatccgaagttgatgattcagaggaagagttcgatcccaaagacatggaggaatataaagccatgtgctattttgtga---ataatggc |
18218235 |
T |
|
| Q |
259 |
tctaaaaatgatcaaaaatccatattcgaaaaacttgatgattcgatgaagaatcatcttaaaactttgttcatccaagccaaagtggatgagattggta |
358 |
Q |
| |
|
||| || || ||| ||| ||||||| ||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18218236 |
tctgaagataatcggaaagccatatttgaacagcttgatgattcgatgaagaatcatctcaaaactttgttcatccaagccaaagtggatgagattggtg |
18218335 |
T |
|
| Q |
359 |
tcaacaaagtgttggtcgatggtggtgctgctgtaaatttgatgcctcaatccttactcaaaatgattggtaagaccgacaaagatttgaagcctcataa |
458 |
Q |
| |
|
| ||||||||||||||||| ||||| ||||||| ||| |||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| |
|
|
| T |
18218336 |
ttaacaaagtgttggtcgacggtggcactgctgtcaatctgatgcctcaatccttactcaaaaggattgacaagaccgacaaagatttgaaacctcataa |
18218435 |
T |
|
| Q |
459 |
tgtaatt |
465 |
Q |
| |
|
|||||| |
|
|
| T |
18218436 |
cgtaatt |
18218442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 408
Target Start/End: Complemental strand, 20862933 - 20862859
Alignment:
| Q |
334 |
caagccaaagtggatgagattggtatcaacaaagtgttggtcgatggtggtgctgctgtaaatttgatgcctcaa |
408 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||| |||||||| |||||||||| |||||| ||| |||| |||||| |
|
|
| T |
20862933 |
caagccaaagttgatgatattggagtcaacaaggtgttggtagatggtggtgttgctgtcaatctgatacctcaa |
20862859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 160; Significance: 5e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 140 - 553
Target Start/End: Complemental strand, 2284294 - 2283884
Alignment:
| Q |
140 |
tttccatttttccagctgactatgatatggtgtctgaagtcgaggattcagaggaagagttcaatcccaaggacatggaggaatacaaacccatgtgcta |
239 |
Q |
| |
|
|||||||||| |||||| | ||||||||| | || ||||| || |||| ||||||||||||| ||||||| ||| ||| ||||||||||||||||| |
|
|
| T |
2284294 |
tttccattttaccagctaagtatgatatgatatcggaagttgatgatttagaggaagagttcgatcccaaatacacaagggagtacaaacccatgtgcta |
2284195 |
T |
|
| Q |
240 |
ttttgtaacaaatgatggctctaaaaatgatcaaaaatccatattcgaaaaacttgatgattcgatgaagaatcatcttaaaactttgttcatccaagcc |
339 |
Q |
| |
|
|||||| | || |||||||| || || ||| ||||||||||| ||| ||| ||||| || |||||||| ||| || || |||||||||||||| |
|
|
| T |
2284194 |
ttttgtga---ataatggctctgaagataatcggaaatccatatttgaacaacctgatgctttgatgaagagtcacctcaagcctttgttcatccaaaat |
2284098 |
T |
|
| Q |
340 |
aaagtggatgagattggtatcaacaaagtgttggtcgatggtggtgctgctgtaaatttgatgcctcaatccttactcaaaatgattggtaagaccgaca |
439 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||| |||||||| ||||| ||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2284097 |
aaagtggatgagattggtgttaacaaagtgttggtcgacggtggtgccgctgtcaatctgatgcctcaatccttactcaaaaggattggtaagaccgaca |
2283998 |
T |
|
| Q |
440 |
aagatttgaagcctcataatgtaattttgtcaaattatgaaggaaaggatggtcattcccttggtgctctccaagtgagtctaacggtgggaactgtggt |
539 |
Q |
| |
|
||||||||||||| |||||||| |||||||| |||||||||||||||| | || |||| |||| |||||| ||||| || |||| ||||||||| |||| |
|
|
| T |
2283997 |
aagatttgaagccgcataatgtgattttgtcgaattatgaaggaaaggcttgtaattcacttgatgctcttcaagtaagcttaacagtgggaactctggt |
2283898 |
T |
|
| Q |
540 |
cagaccaactttgt |
553 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
2283897 |
tagaacaactttgt |
2283884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 194
Target Start/End: Original strand, 22034055 - 22034190
Alignment:
| Q |
59 |
aagaggatcctgatgaagatgatgatttgggttcagattttatggattcagaaccggactttgacgtcatattcaacttgatttccatttttccagctga |
158 |
Q |
| |
|
||||| |||||| || ||||||||| | | || |||||| | |||||||||||| |||| |||||||| | ||| ||||||||||||||| || || |
|
|
| T |
22034055 |
aagagaatcctgttggagatgatgaaatagatttagatttcaaggattcagaacctaacttcgacgtcatttgcaatgtgatttccatttttcatgcaga |
22034154 |
T |
|
| Q |
159 |
ctatgatatggtgtctgaagtcgaggattcagagga |
194 |
Q |
| |
|
||| || ||||||||||| | ||||| |||||||| |
|
|
| T |
22034155 |
atataatgtggtgtctgaaatggaggaatcagagga |
22034190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 529
Target Start/End: Complemental strand, 16052796 - 16052760
Alignment:
| Q |
493 |
cattcccttggtgctctccaagtgagtctaacggtgg |
529 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
16052796 |
cattcccttggtgctctccaagtgaatctaactgtgg |
16052760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 32 - 197
Target Start/End: Complemental strand, 22803911 - 22803746
Alignment:
| Q |
32 |
aataaaggtagtctcttcccctagtcaaagaggatcctgatgaagatgatgatttgggttcagattttatggattcagaaccggactttgacgtcatatt |
131 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||| | ||||||||||||||||| ||||| ||| |||||| |
|
|
| T |
22803911 |
aataaaggttgtctcttcccctagtcaaagaggattctgatgaagatgatgaattgggttcaaagtttatggattcagaaccagacttcgacttcatatg |
22803812 |
T |
|
| Q |
132 |
caacttgatttccatttttccagctgactatgatatggtgtctgaagtcgaggattcagaggaaga |
197 |
Q |
| |
|
||| || | || ||||| |||||| | ||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
22803811 |
caatgtggtctcaattttgccagcttaatatgatatggtatctgaagtcgatgattcagaggaaga |
22803746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0142 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0142
Description:
Target: scaffold0142; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 328 - 416
Target Start/End: Complemental strand, 15627 - 15539
Alignment:
| Q |
328 |
ttcatccaagccaaagtggatgagattggtatcaacaaagtgttggtcgatggtggtgctgctgtaaatttgatgcctcaatccttact |
416 |
Q |
| |
|
||||| |||| |||||| ||||| ||| | |||||||| ||||||| |||||||||| |||||| ||||||||||||||||| ||||| |
|
|
| T |
15627 |
ttcattcaagtcaaagttgatgatattagagtcaacaaattgttggtagatggtggtgttgctgtcaatttgatgcctcaatctttact |
15539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 530
Target Start/End: Original strand, 107189 - 107226
Alignment:
| Q |
493 |
cattcccttggtgctctccaagtgagtctaacggtggg |
530 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
107189 |
cattcccttggtgctctccaagtaagtctaatggtggg |
107226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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