View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13653_low_11 (Length: 400)
Name: NF13653_low_11
Description: NF13653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13653_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 61 - 387
Target Start/End: Complemental strand, 46093240 - 46092922
Alignment:
| Q |
61 |
attcgattttttattgctttacgtaagacaaggattgcataaaataatgggtagcacattggttggatatgaattaagtcaaatatactctttttt-gtg |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
46093240 |
attcgattttttattgctttacgtaagacaaggattgcataaaataatgggtagcacattggttggatatgaattaagtcaaatatactctttttttgtg |
46093141 |
T |
|
| Q |
160 |
aaagatatgaagtcaaatatacttaataagtagtagtaatttgttttatgcatatataggatgtgttgtgtggcaaccacacgattgcgtgtggccaaag |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
46093140 |
aaagatatgaagtcaaatatacttaataagtagtagtaatttgttttatgcata----ggatgtgt-----ggcaaccacacgatagcgtgtggccaaag |
46093050 |
T |
|
| Q |
260 |
gaatccacttatcctctcaatgatgctcctgtcgtcatacaacagctacatatatcgactatatggcccaactgtctgaattttgtttatactaattata |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
46093049 |
gaatccacttatcctctcaatgatgctcctgtcgtcatacaacagctacatatatcgactatatggcccaagtgtctgaattttgtttatactaattata |
46092950 |
T |
|
| Q |
360 |
tgctcctttcattgattcgtaaccagaa |
387 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
46092949 |
tgctcctttcattgattcgtaaccagaa |
46092922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University