View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13653_low_14 (Length: 321)

Name: NF13653_low_14
Description: NF13653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13653_low_14
NF13653_low_14
[»] chr7 (2 HSPs)
chr7 (73-302)||(38196951-38197180)
chr7 (16-78)||(38197201-38197263)
[»] chr1 (1 HSPs)
chr1 (77-276)||(19024727-19024926)
[»] chr3 (1 HSPs)
chr3 (104-302)||(25499568-25499763)
[»] chr2 (2 HSPs)
chr2 (125-273)||(34211348-34211496)
chr2 (125-270)||(18978616-18978761)
[»] chr6 (2 HSPs)
chr6 (240-298)||(6509443-6509501)
chr6 (73-171)||(6509562-6509660)
[»] chr5 (1 HSPs)
chr5 (186-276)||(12168432-12168522)
[»] scaffold0094 (1 HSPs)
scaffold0094 (203-276)||(13837-13909)


Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 73 - 302
Target Start/End: Complemental strand, 38197180 - 38196951
Alignment:
Q  73 ttgtatgagcacttttctgttaccaactactttgggggaggaaattcagagaatgattaattcattttggtgggggtcgaatagaagtcaaggtaaaggt 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38197180 ttgtatgagcacttttctgttaccaactactttgggggaggaaattcagagaatgattaattcattttggtgggggtcgactagaagtcaaggtaaaggt 38197081  T
Q  173 ataaactgcattaattgggacaaattgactatgagaaaggagtacggaggtatgagattcagacatatgtttggctttaatctggctatgctagggaagc 272  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38197080 ataaactggattaattgggacaaattgactatgagaaaggagtacggaggtatgggattcagacatatgtttggctttaatctggctatgctagggaagc 38196981  T
Q  273 aagggtgagaattgttaactaacccagata 302  Q
    |||||||| |||||||||||||||||||||    
T  38196980 aagggtgaaaattgttaactaacccagata 38196951  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 38197201 - 38197263
Alignment:
Q  16 aactgatttaattaacacttctcttcctgctttggataaatgcttacttgaccattgttgtat 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  38197201 aactgatttaattaacacttctcttcctgctttggataaatgcttacccgaccattgttgtat 38197263  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 77 - 276
Target Start/End: Complemental strand, 19024926 - 19024727
Alignment:
Q  77 atgagcacttttctgttaccaactactttgggggaggaaattcagagaatgattaattcattttggtgggggtcgaatagaagtcaaggtaaaggtataa 176  Q
    ||||||||||||||| ||||||| |||||||| || || || ||||| ||||||||||| ||||||||||| | ||||| | | ||||||| ||| || |    
T  19024926 atgagcacttttctgctaccaacaactttgggagaagagatccagaggatgattaattctttttggtggggtttgaatatatggcaaggtagagggatta 19024827  T
Q  177 actgcattaattgggacaaattgactatgagaaaggagtacggaggtatgagattcagacatatgtttggctttaatctggctatgctagggaagcaagg 276  Q
    | ||  | | |||||||||| | || ||| |||||||||||||||||||| | || |||||  | |||||||||||  ||||||||||||||||||||||    
T  19024826 attggctcatttgggacaaactcacaatgcgaaaggagtacggaggtatggggtttagacacttatttggctttaacttggctatgctagggaagcaagg 19024727  T

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Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 104 - 302
Target Start/End: Original strand, 25499568 - 25499763
Alignment:
Q  104 ttgggggaggaaattcagagaatgattaattcattttggtgggggtcgaatagaagtcaaggtaaaggtataaactgcattaattgggacaaattgacta 203  Q
    ||||| ||||| ||||| |||||||||||||| ||||||||||| || ||||| || |||||||||||||| || ||  ||  |||||||||||| || |    
T  25499568 ttgggagaggagattcaaagaatgattaattctttttggtggggatcaaataggaggcaaggtaaaggtatcaattggctttcttgggacaaattaacaa 25499667  T
Q  204 tgagaaaggagtacggaggtatgagattcagacatatgtttggctttaatctggctatgctagggaagcaagggtgagaattgttaactaacccagata 302  Q
    || | |||||||| ||||| ||| |    |||||  ||||||| |||||| |||||||||||||||||||||||||| |  | |||||| |||||||||    
T  25499668 tgcgtaaggagtatggaggcatggg---tagacacttgtttggttttaatttggctatgctagggaagcaagggtgaaagcttttaactcacccagata 25499763  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 273
Target Start/End: Original strand, 34211348 - 34211496
Alignment:
Q  125 atgattaattcattttggtgggggtcgaatagaagtcaaggtaaaggtataaactgcattaattgggacaaattgactatgagaaaggagtacggaggta 224  Q
    ||||||||||| ||||||||||| ||||||||||| ||||||| ||| || || ||  |    ||||| ||||| || ||||| |||||||| || ||||    
T  34211348 atgattaattccttttggtggggttcgaatagaaggcaaggtagagggatcaattggctccgatgggataaattaacaatgaggaaggagtatggtggta 34211447  T
Q  225 tgagattcagacatatgtttggctttaatctggctatgctagggaagca 273  Q
    || | || |||||  | ||| |||||||| |||||||||||||||||||    
T  34211448 tggggtttagacactttttttgctttaatttggctatgctagggaagca 34211496  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 270
Target Start/End: Complemental strand, 18978761 - 18978616
Alignment:
Q  125 atgattaattcattttggtgggggtcgaatagaagtcaaggtaaaggtataaactgcattaattgggacaaattgactatgagaaaggagtacggaggta 224  Q
    ||||||||||| ||||||||||| ||||||||||| ||||||| ||| || || ||  |    ||||| ||||| || ||||| |||||||| || || |    
T  18978761 atgattaattccttttggtggggttcgaatagaaggcaaggtagagggatcaattggctccgatgggataaattaacaatgaggaaggagtatggtggaa 18978662  T
Q  225 tgagattcagacatatgtttggctttaatctggctatgctagggaa 270  Q
    || |||| |||||  | ||| |||||||| ||||||||||||||||    
T  18978661 tgggatttagacacttttttagctttaatttggctatgctagggaa 18978616  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 298
Target Start/End: Complemental strand, 6509501 - 6509443
Alignment:
Q  240 tgtttggctttaatctggctatgctagggaagcaagggtgagaattgttaactaaccca 298  Q
    |||||||||||||| || ||| ||||||||||||||||||| ||||||||||| |||||    
T  6509501 tgtttggctttaatttgtctacgctagggaagcaagggtgaaaattgttaactcaccca 6509443  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 171
Target Start/End: Complemental strand, 6509660 - 6509562
Alignment:
Q  73 ttgtatgagcacttttctgttaccaactactttgggggaggaaattcagagaatgattaattcattttggtgggggtcgaatagaagtcaaggtaaagg 171  Q
    |||||||||||||||  | |||||||| || ||||||||||| ||||| | ||||||||| || || |||||||| | |||||| || ||||| |||||    
T  6509660 ttgtatgagcactttcttattaccaacaacattgggggaggagattcaaataatgattaactctttctggtggggattgaataggaggcaaggcaaagg 6509562  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 276
Target Start/End: Original strand, 12168432 - 12168522
Alignment:
Q  186 attgggacaaattgactatgagaaaggagtacggaggtatgagattcagacatatgtttggctttaatctggctatgctagggaagcaagg 276  Q
    ||||||||||| | || ||||| |||||||| ||||||||| | || |||||  | |||||||||||  | ||||||||||||||||||||    
T  12168432 attgggacaaactaacaatgaggaaggagtatggaggtatgggttttagacacttttttggctttaacttagctatgctagggaagcaagg 12168522  T

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Target: scaffold0094 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 276
Target Start/End: Original strand, 13837 - 13909
Alignment:
Q  203 atgagaaaggagtacggaggtatgagattcagacatatgtttggctttaatctggctatgctagggaagcaagg 276  Q
    ||||| |||||||| ||||||||| | |||| |||  | |||||||||||| ||||||||||||||||||||||    
T  13837 atgaggaaggagtatggaggtatgggtttcatacactt-tttggctttaatttggctatgctagggaagcaagg 13909  T

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