View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13653_low_18 (Length: 267)
Name: NF13653_low_18
Description: NF13653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13653_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 43 - 257
Target Start/End: Original strand, 34059483 - 34059697
Alignment:
| Q |
43 |
caagaagctctagctcaatcagtcattgcctctacactgattttctcttactctccagtgaatttctctcaaagggtgttaaccttttgagtgcaattct |
142 |
Q |
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| T |
34059483 |
caagaagctctagctcaatctgtcattgcctctacactgattttcgcttactctccagtgaatttctctcaaagggtgttaaccttttgagtgcaattgt |
34059582 |
T |
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| Q |
143 |
tataccaattttaagaacagctttgtaagnnnnnnnggagtaaaatgccattaaaatacaacaaagtcacaaccacagatcaatctcacattttcaggca |
242 |
Q |
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| T |
34059583 |
tataccaattttaagaacagttttgtaagaaaaaaaggagtaaaatgccattaaaatacaacaaagtcacaaccacagatcaatctcacattttcaggca |
34059682 |
T |
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| Q |
243 |
aaaccacactctgtg |
257 |
Q |
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|||||||||| |||| |
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| T |
34059683 |
aaaccacactttgtg |
34059697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 169
Target Start/End: Original strand, 6504910 - 6505034
Alignment:
| Q |
45 |
agaagctctagctcaatcagtcattgcctctacactgattttctcttactctccagtgaatttctctcaaagggtgttaaccttttgagtgcaattctta |
144 |
Q |
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|||||||||||||| || || |||||||| ||| || ||| || |||||||| | ||||| |||||||||||||||| |||||| | |||||| | | |
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| T |
6504910 |
agaagctctagctccatttgtatttgcctcttcaccgactttttcctactctccggcgaattgctctcaaagggtgttagccttttaaccgcaattatga |
6505009 |
T |
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| Q |
145 |
taccaattttaagaacagctttgta |
169 |
Q |
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|||| ||| |||||||| |||||| |
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| T |
6505010 |
gaccattttcaagaacagttttgta |
6505034 |
T |
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