View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13653_low_2 (Length: 809)

Name: NF13653_low_2
Description: NF13653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13653_low_2
NF13653_low_2
[»] chr4 (20 HSPs)
chr4 (20-799)||(54778863-54779628)
chr4 (20-535)||(54789784-54790282)
chr4 (20-534)||(52282415-52282944)
chr4 (324-358)||(843150-843184)
chr4 (627-665)||(35780565-35780603)
chr4 (551-585)||(54789722-54789756)
chr4 (627-672)||(1105450-1105495)
chr4 (627-672)||(10431444-10431489)
chr4 (627-672)||(37514577-37514622)
chr4 (627-672)||(38209843-38209888)
chr4 (627-672)||(55255099-55255144)
chr4 (627-667)||(9579476-9579516)
chr4 (627-667)||(9585171-9585211)
chr4 (627-665)||(5128992-5129030)
chr4 (627-672)||(17679236-17679281)
chr4 (627-672)||(27596641-27596686)
chr4 (627-660)||(35463960-35463993)
chr4 (627-672)||(45560706-45560751)
chr4 (627-672)||(47128000-47128045)
chr4 (627-672)||(48208469-48208514)
[»] chr8 (9 HSPs)
chr8 (194-535)||(19295825-19296149)
chr8 (627-672)||(45472210-45472255)
chr8 (551-585)||(19295763-19295797)
chr8 (627-672)||(2952474-2952519)
chr8 (627-672)||(3048775-3048820)
chr8 (627-672)||(5860997-5861042)
chr8 (627-672)||(20003878-20003923)
chr8 (627-672)||(30883129-30883174)
chr8 (328-358)||(3556317-3556347)
[»] chr6 (13 HSPs)
chr6 (324-386)||(22745526-22745588)
chr6 (627-672)||(19741225-19741270)
chr6 (627-672)||(23070891-23070936)
chr6 (627-672)||(24711144-24711189)
chr6 (627-667)||(21280352-21280392)
chr6 (324-359)||(6074043-6074078)
chr6 (324-359)||(6074529-6074564)
chr6 (328-362)||(585725-585759)
chr6 (627-665)||(27314773-27314811)
chr6 (627-672)||(12083642-12083687)
chr6 (627-672)||(13727651-13727696)
chr6 (627-672)||(21479303-21479348)
chr6 (627-672)||(30832669-30832714)
[»] chr1 (11 HSPs)
chr1 (627-666)||(5027982-5028021)
chr1 (627-672)||(3406342-3406387)
chr1 (627-672)||(3440433-3440478)
chr1 (627-672)||(14146224-14146269)
chr1 (627-672)||(23181730-23181775)
chr1 (627-672)||(27906950-27906995)
chr1 (627-672)||(44655558-44655603)
chr1 (627-667)||(41697286-41697326)
chr1 (627-672)||(6771715-6771760)
chr1 (627-672)||(6888488-6888533)
chr1 (627-672)||(10912096-10912141)
[»] scaffold0070 (1 HSPs)
scaffold0070 (627-672)||(1030-1075)
[»] chr5 (12 HSPs)
chr5 (627-672)||(31881592-31881637)
chr5 (627-672)||(15480231-15480276)
chr5 (627-672)||(19523112-19523157)
chr5 (627-672)||(30853285-30853330)
chr5 (627-672)||(34756616-34756661)
chr5 (324-359)||(9895163-9895198)
chr5 (324-367)||(10392914-10392957)
chr5 (324-359)||(15086714-15086749)
chr5 (627-657)||(33046398-33046428)
chr5 (627-672)||(2274817-2274862)
chr5 (328-369)||(4991144-4991185)
chr5 (627-672)||(36188021-36188066)
[»] chr3 (21 HSPs)
chr3 (627-672)||(3954854-3954899)
chr3 (627-672)||(13795206-13795251)
chr3 (324-365)||(18268007-18268048)
chr3 (627-672)||(27078820-27078865)
chr3 (627-672)||(27084617-27084662)
chr3 (627-672)||(36605865-36605910)
chr3 (627-672)||(36716277-36716322)
chr3 (627-672)||(38681349-38681394)
chr3 (627-672)||(53149459-53149504)
chr3 (627-672)||(54619455-54619500)
chr3 (627-667)||(1148361-1148401)
chr3 (324-360)||(21768622-21768658)
chr3 (324-363)||(5457224-5457263)
chr3 (328-367)||(28525028-28525067)
chr3 (627-672)||(42098717-42098762)
chr3 (627-672)||(47467600-47467645)
chr3 (324-365)||(47542551-47542592)
chr3 (324-365)||(47542770-47542811)
chr3 (324-365)||(47542989-47543030)
chr3 (324-365)||(47556436-47556477)
chr3 (627-672)||(50258736-50258781)
[»] chr2 (13 HSPs)
chr2 (324-367)||(21186631-21186674)
chr2 (627-672)||(3155022-3155067)
chr2 (627-672)||(3952918-3952963)
chr2 (627-672)||(6964811-6964856)
chr2 (627-672)||(7162696-7162741)
chr2 (324-362)||(26144328-26144366)
chr2 (627-672)||(4505698-4505743)
chr2 (627-672)||(12337691-12337736)
chr2 (328-385)||(25384480-25384537)
chr2 (627-672)||(34693166-34693211)
chr2 (627-672)||(34715578-34715623)
chr2 (326-387)||(35198211-35198272)
chr2 (328-365)||(37232156-37232193)
[»] chr7 (6 HSPs)
chr7 (627-672)||(12596431-12596476)
chr7 (627-672)||(18777020-18777065)
chr7 (627-672)||(28749600-28749645)
chr7 (324-360)||(20204255-20204291)
chr7 (326-367)||(8093842-8093883)
chr7 (707-744)||(28749682-28749719)


Alignment Details
Target: chr4 (Bit Score: 603; Significance: 0; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 20 - 799
Target Start/End: Original strand, 54778863 - 54779628
Alignment:
Q  20 gcaattagaaaaaagaataagatattccccaaagcgaaacaaactgcataagtgcataacatgcattgtgcacagtttagaaatacaaattcagaacata 119  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  54778863 gcaattagaaaaaagaataagatattccccaaagcaaaacaaactgcataagtgcataacatgcattgtgcacagtttacaaatacaaattcagaacata 54778962  T
Q  120 taaggaaaactacagccatgcatgaagcagagttacatcaaaatgcactacttattaaaaatatagattcaataacatgcactctcccaaaagaaatacc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54778963 taaggaaaactacagccatgcatgaagcagagttacatcaaaatgcactacttattaaaaatatagattcaataacatgcactctcccaaaagaaatacc 54779062  T
Q  220 acacacaactaaataactaaaaattgttagaaaacagtctgctagtagttgaaagaaagctatgaaacactgacacaaacactgcagatgacatagacac 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||| |||||||||||||    
T  54779063 acacacaactaaataactaaaaattgttagaaaacagtctgctagtaattgaaagaaagctatgaaacactgacactgacactgcacatgacatagacac 54779162  T
Q  320 atcatgagaaaatgaattatttgaacgtaatcacatgtgtcagtgtcatgttagtgtccgacaccgaccgacaagtgtgggacacgcctttgatcagagg 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54779163 atcatgagaaaatgaattatttgaacgtaatcacatgtgtcagtgtcatgttagtgtccgacaccgaccgacaagtgtgggacacgcctttgatcagagg 54779262  T
Q  420 tgtgtgccacaaagaaagaaagaccggttgaaactaggcaaaataataatatacaaataaaagaccttataatactctagttcctatcacaaaaatgcag 519  Q
    |||||||||||||||||||||||| |||||||||||||   ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54779263 tgtgtgccacaaagaaagaaagactggttgaaactagg---aaacataatatacaaataaaagaccttataatactctagttcctatcacaaaaatgcag 54779359  T
Q  520 agctaagaatgggaaggaatnnnnnnncagcatttaaactttcacacataggtattcaactaaaaaccacttgtgtataaccaggcccggccctgagggg 619  Q
    ||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  54779360 agctaagaatgggaaggaataaaaaaacagcatttaaactttcacacataggtattcaactaaaaaccacttgtgtataaccaggcccggccctgaggg- 54779458  T
Q  620 gtgcaaagtgcaaacagctcaaccgagctgggcctcccccaaggatggacctcnnnnnnnnnnnnnnnntatgtccagtagtataccatcctccaataaa 719  Q
          ||||||||||||||||||||||||||||||||||||||||||||||                 |||| ||||||||||||||||||||||||||    
T  54779459 ------agtgcaaacagctcaaccgagctgggcctcccccaaggatggacct----aaaaaaaaaaaaatatgcccagtagtataccatcctccaataaa 54779548  T
Q  720 aaataataattatttcatgccctcaccaattcgtcgctcactcgctaatcactactcaatactcatcactgatattcttc 799  Q
    ||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||    
T  54779549 aaaaaaaaattatttcatgccctcaccaattcgtcgctcactcgctcatcactactcaatactcatcaccgattttcttc 54779628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 20 - 535
Target Start/End: Complemental strand, 54790282 - 54789784
Alignment:
Q  20 gcaattagaaaaaagaataagatattccccaaagcgaaacaaactgcataagtgcataacatgcattgtgcacagtttagaaatacaaattcagaacata 119  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  54790282 gcaattagaaaaaagaataagatattccccaaagcaaaacaaactgcataagtgcataacatgcattgtgcacagtttacaaatacaaattcagaacata 54790183  T
Q  120 taaggaaaactacagccatgcatgaagcagagttacatcaaaatgcactacttattaaaaatatagattcaataacatgcactctcccaaaagaaatacc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||    
T  54790182 taaggaaaactacagccatgcatgaagcagagttacatcaaaatgcactacttattaaaaatatagattcaatgacatgcactctcgcaaaagaaaaacc 54790083  T
Q  220 acacacaactaaataactaaaaattgttagaaaacagtctgctagtagttgaaagaaagctatgaaacactgacacaaacactgcagatgacatagacac 319  Q
    |||||||||||||||||||||||||||||||| ||||||||| | || |||||||||||||||||||||||   ||| |||||  | |  ||||||||||    
T  54790082 acacacaactaaataactaaaaattgttagaatacagtctgcaaataattgaaagaaagctatgaaacact--aacagacacttgacacaacatagacac 54789985  T
Q  320 atcatgagaaaatgaattatttgaacgtaatcacatgtgtcagtgtcatgttagtgtccgacaccgaccgacaagtgtgggacacgcctttgatcagagg 419  Q
    || ||||||| ||||||||||||||||||| ||||||||||| |||| |||||||||  ||||||||||||| |||                ||||||||    
T  54789984 ataatgagaacatgaattatttgaacgtaaccacatgtgtcaatgtcgtgttagtgttggacaccgaccgac-agt----------------atcagagg 54789902  T
Q  420 tgt--gtgccacaaagaaagaaagaccggttgaaactaggcaaaataataatatacaaataaaagaccttataatactctagttcctatcacaaaaatgc 517  Q
    |||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  54789901 tgttggtgccacaaagaaagaaagactggttgaaactaggcaaaataataatatacaaataaaagaccttataataccctagttcctatcacaaaaatgc 54789802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 20 - 534
Target Start/End: Complemental strand, 52282944 - 52282415
Alignment:
Q  20 gcaattagaaaaaagaataagatattccccaaagcgaaacaaact-----gcataagtgcataacatgcattgtgcacagtttagaaatacaaattcaga 114  Q
    |||||||| |||||||||||||||| ||||| ||| |||||||||     ||||||||||||||||||||||||||||| | || |||||||||||||||    
T  52282944 gcaattaggaaaaagaataagatatcccccagagcaaaacaaactaaactgcataagtgcataacatgcattgtgcacaatatacaaatacaaattcaga 52282845  T
Q  115 acatataaggaaaactacagccatgcatgaagcagagttacatcaaaatgcactacttattaaaaatatagattcaataacatgcact---ctcccaaaa 211  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    ||| |||||||||||||||||||||||| |||||||||||   |||||||||    
T  52282844 acatataaggaaaactacagccatgcatgaagcagagatacatc---gtgcgctacttattaaaaatatagattcagtaacatgcactctcctcccaaaa 52282748  T
Q  212 gaaataccacacacaactaaataactaaaaattgttagaaaacagtctgctagtagttgaaagaaagctatgaaacactgacacaaacactgcagatgac 311  Q
    |||| |||||||||||||||||||||||||||||||| || ||||||||||  || ||||||||||||||||||||||||||| |||||||| | | |||    
T  52282747 gaaaaaccacacacaactaaataactaaaaattgttaaaatacagtctgcttctaattgaaagaaagctatgaaacactgacataaacactggacacgac 52282648  T
Q  312 atagacacatcat-gagaaaatgaattatttgaacgtaatcacatgtgtcagtgtcatgttagtgtccgacaccgaccgacaagtgtggg-------aca 403  Q
    |||||||| |||| |||| || |||||||||| || ||||||||||||||||| || |||||||||||||||||||||||||||||||||       |||    
T  52282647 atagacacgtcatggagagaacgaattatttgtacataatcacatgtgtcagtttcgtgttagtgtccgacaccgaccgacaagtgtgggacactgaaca 52282548  T
Q  404 cgcctttgatcagaggtgt--gtgccacaaagaaagaaagaccggttgaaactaggcaaaataataatatacaaataaaagaccttataatactctagtt 501  Q
    |||||||||||||||||||  |||||||| || ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  52282547 cgcctttgatcagaggtgttggtgccacagagtaagaaagactggttgaaactaggaaaaataataatatacaaataaaagaccttataataccctagtt 52282448  T
Q  502 cctatcacaaaaatgcagagctaagaatgggaa 534  Q
     |||||||||||||||||||||| |||||||||    
T  52282447 gctatcacaaaaatgcagagctaggaatgggaa 52282415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 324 - 358
Target Start/End: Complemental strand, 843184 - 843150
Alignment:
Q  324 tgagaaaatgaattatttgaacgtaatcacatgtg 358  Q
    |||||||||||||||||||||||||||||||||||    
T  843184 tgagaaaatgaattatttgaacgtaatcacatgtg 843150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 627 - 665
Target Start/End: Complemental strand, 35780603 - 35780565
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggat 665  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  35780603 gtgcaaacagctcaaccgagctgggcctcccccacggat 35780565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 551 - 585
Target Start/End: Complemental strand, 54789756 - 54789722
Alignment:
Q  551 atttaaactttcacacataggtattcaactaaaaa 585  Q
    |||||||||||||||||||||||||||||||||||    
T  54789756 atttaaactttcacacataggtattcaactaaaaa 54789722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 1105450 - 1105495
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  1105450 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctc 1105495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 10431489 - 10431444
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  10431489 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctc 10431444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 37514577 - 37514622
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| |||||||||||||| |||||||||| ||||    
T  37514577 gtgcaaacagctcaaacgagctgggcctcctccaaggatgggcctc 37514622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 38209888 - 38209843
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  38209888 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctc 38209843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 55255099 - 55255144
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  55255099 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctc 55255144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 627 - 667
Target Start/End: Complemental strand, 9579516 - 9579476
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatgg 667  Q
    ||||||||||||||| ||||||||||||||| |||||||||    
T  9579516 gtgcaaacagctcaaacgagctgggcctccctcaaggatgg 9579476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 627 - 667
Target Start/End: Complemental strand, 9585211 - 9585171
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatgg 667  Q
    ||||||||||||||| ||||||||||||||| |||||||||    
T  9585211 gtgcaaacagctcaaacgagctgggcctccctcaaggatgg 9585171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 627 - 665
Target Start/End: Complemental strand, 5129030 - 5128992
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggat 665  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  5129030 gtgcaaacagctcaaacgagctgggcctccctcaaggat 5128992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 17679236 - 17679281
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||| ||||||| ||||||||| ||||    
T  17679236 gtgcaaacagctcaaacgagctgagcctccctcaaggatgggcctc 17679281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 27596686 - 27596641
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    |||| |||||||||| ||||||||||||||||| ||||||| ||||    
T  27596686 gtgcgaacagctcaaacgagctgggcctcccccgaggatgggcctc 27596641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 660
Target Start/End: Original strand, 35463960 - 35463993
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctccccca 660  Q
    |||||||||||||||| |||||||||||||||||    
T  35463960 gtgcaaacagctcaacagagctgggcctccccca 35463993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 45560751 - 45560706
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||| ||||| ||||    
T  45560751 gtgcaaacagctcaaacgagctgggcctccctcaaagatgggcctc 45560706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 47128000 - 47128045
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||| ||| ||||||||||||||| ||||||||| ||||    
T  47128000 gtgcaaacagcccaaacgagctgggcctccctcaaggatgggcctc 47128045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 48208469 - 48208514
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| |||| |||||||||| ||||||||| ||||    
T  48208469 gtgcaaacagctcaaacgagttgggcctccctcaaggatgggcctc 48208514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 169; Significance: 3e-90; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 194 - 535
Target Start/End: Complemental strand, 19296149 - 19295825
Alignment:
Q  194 acatgcactctcccaaaagaaataccacacacaactaaataactaaaaattgttagaaaacagtctgctagtagttgaaagaaagctatgaaacactgac 293  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| | || ||||||||||||||||||||||| ||    
T  19296149 acatgcactctcgcaaaagaaaaaccacacacaactaaataactaaaaattgttagaatacagtctgcaaataattgaaagaaagctatgaaacactaac 19296050  T
Q  294 acaaacactgcagatgacatagacacatcatgagaaaatgaattatttgaacgtaatcacatgtgtcagtgtcatgttagtgtccgacaccgaccgacaa 393  Q
    | |  ||||  | |  |||||||||||| ||||||| ||||||||||||||||||| ||||||||||| |||| |||||||||  ||||||||||||||     
T  19296049 aga--cacttgacacaacatagacacataatgagaacatgaattatttgaacgtaaccacatgtgtcaatgtcgtgttagtgttggacaccgaccgaca- 19295953  T
Q  394 gtgtgggacacgcctttgatcagaggtgt--gtgccacaaagaaagaaagaccggttgaaactaggcaaaataataatatacaaataaaagaccttataa 491  Q
      ||              |||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19295952 --gt--------------atcagaggtgttggtgccacaaagaaagaaagactggttgaaactaggcaaaataataatatacaaataaaagaccttataa 19295869  T
Q  492 tactctagttcctatcacaaaaatgcagagctaagaatgggaag 535  Q
    ||| |||||||||||||||||||||||||||||||||| |||||    
T  19295868 taccctagttcctatcacaaaaatgcagagctaagaataggaag 19295825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 45472210 - 45472255
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||    
T  45472210 gtgcaaacagctcaaccgagctgggccacccccaaggatgggcctc 45472255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 551 - 585
Target Start/End: Complemental strand, 19295797 - 19295763
Alignment:
Q  551 atttaaactttcacacataggtattcaactaaaaa 585  Q
    |||||||||||||||||||||||||||||||||||    
T  19295797 atttaaactttcacacataggtattcaactaaaaa 19295763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 2952519 - 2952474
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  2952519 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctc 2952474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 3048820 - 3048775
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  3048820 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctc 3048775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 5861042 - 5860997
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  5861042 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctc 5860997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 20003923 - 20003878
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  20003923 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctc 20003878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 30883129 - 30883174
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  30883129 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctc 30883174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 328 - 358
Target Start/End: Original strand, 3556317 - 3556347
Alignment:
Q  328 aaaatgaattatttgaacgtaatcacatgtg 358  Q
    |||||||||||||||||||||||||||||||    
T  3556317 aaaatgaattatttgaacgtaatcacatgtg 3556347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 324 - 386
Target Start/End: Complemental strand, 22745588 - 22745526
Alignment:
Q  324 tgagaaaatgaattatttgaacgtaatcacatgtgtcagtgtcatgttagtgtccgacaccga 386  Q
    |||||||||||||||||| |||||||| |||||| ||||||||||||| ||||| ||||||||    
T  22745588 tgagaaaatgaattatttaaacgtaatgacatgtttcagtgtcatgttggtgtcggacaccga 22745526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 19741270 - 19741225
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||    
T  19741270 gtgcaaacagctcaaacgagctgggcctccctcaaggatggacctc 19741225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 23070936 - 23070891
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  23070936 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctc 23070891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 24711189 - 24711144
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| | ||||||||||||||||||||||| ||||    
T  24711189 gtgcaaacagctcaaacaagctgggcctcccccaaggatgggcctc 24711144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 627 - 667
Target Start/End: Original strand, 21280352 - 21280392
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatgg 667  Q
    ||||||||||||||| ||||||||||||||| |||||||||    
T  21280352 gtgcaaacagctcaaacgagctgggcctccctcaaggatgg 21280392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 324 - 359
Target Start/End: Original strand, 6074043 - 6074078
Alignment:
Q  324 tgagaaaatgaattatttgaacgtaatcacatgtgt 359  Q
    ||||||||||||||||||||||||||||| ||||||    
T  6074043 tgagaaaatgaattatttgaacgtaatcatatgtgt 6074078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 324 - 359
Target Start/End: Original strand, 6074529 - 6074564
Alignment:
Q  324 tgagaaaatgaattatttgaacgtaatcacatgtgt 359  Q
    ||||||||||||||| ||||||||||||||||||||    
T  6074529 tgagaaaatgaattagttgaacgtaatcacatgtgt 6074564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 328 - 362
Target Start/End: Complemental strand, 585759 - 585725
Alignment:
Q  328 aaaatgaattatttgaacgtaatcacatgtgtcag 362  Q
    ||||||||||| |||||||||||||||||||||||    
T  585759 aaaatgaattaattgaacgtaatcacatgtgtcag 585725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 627 - 665
Target Start/End: Complemental strand, 27314811 - 27314773
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggat 665  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  27314811 gtgcaaacagctcaaacgagctgggcctccctcaaggat 27314773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 12083687 - 12083642
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| |||||||||||| || ||||||||| ||||    
T  12083687 gtgcaaacagctcaaacgagctgggccttcctcaaggatgggcctc 12083642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 13727696 - 13727651
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||| ||||| ||||    
T  13727696 gtgcaaacagctcaaacgagctgggcctccctcaaagatgggcctc 13727651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 21479303 - 21479348
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    |||||||||||| || ||||||||||||||| ||||||||| ||||    
T  21479303 gtgcaaacagctaaaacgagctgggcctccctcaaggatgggcctc 21479348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 30832714 - 30832669
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    |||||||||||||||  |||||||||||||| ||||||||| ||||    
T  30832714 gtgcaaacagctcaaatgagctgggcctccctcaaggatgggcctc 30832669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 627 - 666
Target Start/End: Complemental strand, 5028021 - 5027982
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatg 666  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5028021 gtgcaaacagctcaaccgagctgggcctcccccaaggatg 5027982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 3406342 - 3406387
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||    
T  3406342 gtgcaaacagctcaaacgagctgggcctcccccaaggatgggcctc 3406387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 3440478 - 3440433
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||    
T  3440478 gtgcaaacagctcaaacgagctgggcctcccccaaggatgggcctc 3440433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 14146224 - 14146269
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  14146224 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctc 14146269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 23181730 - 23181775
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||||||||||||||| ||||||| ||||| ||||    
T  23181730 gtgcaaacagctcaaccgagctgggccacccccaatgatgggcctc 23181775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 27906995 - 27906950
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  27906995 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctc 27906950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 44655558 - 44655603
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  44655558 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctc 44655603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 627 - 667
Target Start/End: Complemental strand, 41697326 - 41697286
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatgg 667  Q
    ||||||||||||||| ||||||||||||||| |||||||||    
T  41697326 gtgcaaacagctcaaacgagctgggcctccctcaaggatgg 41697286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 6771715 - 6771760
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| |||||||||||||||  |||||||| ||||    
T  6771715 gtgcaaacagctcaaacgagctgggcctcccttaaggatgggcctc 6771760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 6888488 - 6888533
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| |||| |||||||||| ||||||||| ||||    
T  6888488 gtgcaaacagctcaaacgagttgggcctccctcaaggatgggcctc 6888533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 10912141 - 10912096
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    |||| |||||||||| |||||||||||||| |||||||||| ||||    
T  10912141 gtgcgaacagctcaaacgagctgggcctcctccaaggatgggcctc 10912096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 1030 - 1075
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||    
T  1030 gtgcaaacagctcaaacgagctgggcctccctcaaggatggacctc 1075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 31881637 - 31881592
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||    
T  31881637 gtgcaaacagctcaaacgagctgggcctccctcaaggatggacctc 31881592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 15480276 - 15480231
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  15480276 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctc 15480231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 19523112 - 19523157
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  19523112 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctc 19523157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 30853285 - 30853330
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||  ||||||||||||||    
T  30853285 gtgcaaacagctcaaacgagctgggcctccttcaaggatggacctc 30853330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 34756661 - 34756616
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  34756661 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctc 34756616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 324 - 359
Target Start/End: Original strand, 9895163 - 9895198
Alignment:
Q  324 tgagaaaatgaattatttgaacgtaatcacatgtgt 359  Q
    ||||||||| ||||||||||||||||||||||||||    
T  9895163 tgagaaaataaattatttgaacgtaatcacatgtgt 9895198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 324 - 367
Target Start/End: Complemental strand, 10392957 - 10392914
Alignment:
Q  324 tgagaaaatgaattatttgaacgtaatcacatgtgtcagtgtca 367  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||||    
T  10392957 tgagaaaatgaattatttgaacgtactcagatgtgtcggtgtca 10392914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 324 - 359
Target Start/End: Original strand, 15086714 - 15086749
Alignment:
Q  324 tgagaaaatgaattatttgaacgtaatcacatgtgt 359  Q
    ||||||| ||||||||||||||||||||||||||||    
T  15086714 tgagaaagtgaattatttgaacgtaatcacatgtgt 15086749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 627 - 657
Target Start/End: Complemental strand, 33046428 - 33046398
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctccc 657  Q
    |||||||||||||||||||||||||||||||    
T  33046428 gtgcaaacagctcaaccgagctgggcctccc 33046398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 2274817 - 2274862
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    |||||||||||||||  ||| |||||||||| ||||||||||||||    
T  2274817 gtgcaaacagctcaaatgagttgggcctccctcaaggatggacctc 2274862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 4991185 - 4991144
Alignment:
Q  328 aaaatgaattatttgaacgtaatcacatgtgtcagtgtcatg 369  Q
    ||||||||||| ||||| |||||||||||||||| |||||||    
T  4991185 aaaatgaattaattgaatgtaatcacatgtgtcattgtcatg 4991144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 36188066 - 36188021
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| |||| |||||||||| ||||||||| ||||    
T  36188066 gtgcaaacagctcaaacgagttgggcctccctcaaggatgggcctc 36188021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 3954899 - 3954854
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||    
T  3954899 gtgcaaacagctcaaacgagctgggcctccctcaaggatggacctc 3954854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 13795206 - 13795251
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  13795206 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctc 13795251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 324 - 365
Target Start/End: Complemental strand, 18268048 - 18268007
Alignment:
Q  324 tgagaaaatgaattatttgaacgtaatcacatgtgtcagtgt 365  Q
    ||||||||||||||| ||||||||||||||||||||| ||||    
T  18268048 tgagaaaatgaattaattgaacgtaatcacatgtgtcggtgt 18268007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 27078865 - 27078820
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  27078865 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctc 27078820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 27084662 - 27084617
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  27084662 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctc 27084617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 36605865 - 36605910
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  36605865 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctc 36605910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 36716322 - 36716277
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  36716322 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctc 36716277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 38681394 - 38681349
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  38681394 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctc 38681349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 53149504 - 53149459
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| |||||||||||||| |||||||||| ||||    
T  53149504 gtgcaaacagctcaaacgagctgggcctccaccaaggatgggcctc 53149459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 54619500 - 54619455
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  54619500 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctc 54619455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 627 - 667
Target Start/End: Complemental strand, 1148401 - 1148361
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatgg 667  Q
    |||| |||||||||| |||||||||||||||||||||||||    
T  1148401 gtgcgaacagctcaaacgagctgggcctcccccaaggatgg 1148361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 324 - 360
Target Start/End: Original strand, 21768622 - 21768658
Alignment:
Q  324 tgagaaaatgaattatttgaacgtaatcacatgtgtc 360  Q
    |||||||||||||||||||||||||| ||||||||||    
T  21768622 tgagaaaatgaattatttgaacgtaaccacatgtgtc 21768658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 324 - 363
Target Start/End: Complemental strand, 5457263 - 5457224
Alignment:
Q  324 tgagaaaatgaattatttgaacgtaatcacatgtgtcagt 363  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  5457263 tgagaaaatcaattatttgaacgtaatcacacgtgtcagt 5457224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 328 - 367
Target Start/End: Original strand, 28525028 - 28525067
Alignment:
Q  328 aaaatgaattatttgaacgtaatcacatgtgtcagtgtca 367  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  28525028 aaaatgaattaattgaatgtaatcacatgtgtcagtgtca 28525067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 42098717 - 42098762
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| |||| |||||||||| ||||||||| ||||    
T  42098717 gtgcaaacagctcaaacgagttgggcctcccacaaggatgggcctc 42098762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 47467600 - 47467645
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||| ||||||| ||||||||| ||||    
T  47467600 gtgcaaacagctcaaacgagctgagcctccctcaaggatgggcctc 47467645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 324 - 365
Target Start/End: Original strand, 47542551 - 47542592
Alignment:
Q  324 tgagaaaatgaattatttgaacgtaatcacatgtgtcagtgt 365  Q
    |||||||||||| |||||||| ||||||||||||||| ||||    
T  47542551 tgagaaaatgaactatttgaatgtaatcacatgtgtcggtgt 47542592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 324 - 365
Target Start/End: Original strand, 47542770 - 47542811
Alignment:
Q  324 tgagaaaatgaattatttgaacgtaatcacatgtgtcagtgt 365  Q
    ||||| ||||||||||||||| ||||||||||||||| ||||    
T  47542770 tgagataatgaattatttgaatgtaatcacatgtgtcggtgt 47542811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 324 - 365
Target Start/End: Original strand, 47542989 - 47543030
Alignment:
Q  324 tgagaaaatgaattatttgaacgtaatcacatgtgtcagtgt 365  Q
    ||||| ||||||||||||||| ||||||||||||||| ||||    
T  47542989 tgagataatgaattatttgaatgtaatcacatgtgtcggtgt 47543030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 324 - 365
Target Start/End: Original strand, 47556436 - 47556477
Alignment:
Q  324 tgagaaaatgaattatttgaacgtaatcacatgtgtcagtgt 365  Q
    ||||| ||||||||||||||| ||||||||||||||| ||||    
T  47556436 tgagataatgaattatttgaatgtaatcacatgtgtcggtgt 47556477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 50258781 - 50258736
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    |||||||||||||||  |||||||||||||| ||||||||| ||||    
T  50258781 gtgcaaacagctcaaatgagctgggcctccctcaaggatgggcctc 50258736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000008; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 324 - 367
Target Start/End: Complemental strand, 21186674 - 21186631
Alignment:
Q  324 tgagaaaatgaattatttgaacgtaatcacatgtgtcagtgtca 367  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||    
T  21186674 tgagaaagtgaattatttgaacgtaatcacatgtgtcggtgtca 21186631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 3155022 - 3155067
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  3155022 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctc 3155067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 3952918 - 3952963
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  3952918 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctc 3952963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 6964811 - 6964856
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  6964811 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctc 6964856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 7162696 - 7162741
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  7162696 gtgcaaacagctcaaacgagctgggcctcccacaaggatgggcctc 7162741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 324 - 362
Target Start/End: Complemental strand, 26144366 - 26144328
Alignment:
Q  324 tgagaaaatgaattatttgaacgtaatcacatgtgtcag 362  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  26144366 tgagaaaattaattatttgaacggaatcacatgtgtcag 26144328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 4505698 - 4505743
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||| ||||| ||||    
T  4505698 gtgcaaacagctcaaacgagctgggcctccctcaatgatgggcctc 4505743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 12337736 - 12337691
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||| ||||||| ||||||||| ||||    
T  12337736 gtgcaaacagctcaaacgagctgagcctccctcaaggatgggcctc 12337691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 328 - 385
Target Start/End: Complemental strand, 25384537 - 25384480
Alignment:
Q  328 aaaatgaattatttgaacgtaatcacatgtgtcagtgtcatgttagtgtccgacaccg 385  Q
    ||||||||||||  ||||| ||||||||||||||||||| ||  |||||| |||||||    
T  25384537 aaaatgaattatgggaacggaatcacatgtgtcagtgtcgtgccagtgtcagacaccg 25384480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 34693166 - 34693211
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| |||| |||||||||| ||||||||| ||||    
T  34693166 gtgcaaacagctcaaacgagttgggcctccctcaaggatgggcctc 34693211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 34715578 - 34715623
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| |||| |||||||||| ||||||||| ||||    
T  34715578 gtgcaaacagctcaaacgagttgggcctccctcaaggatgggcctc 34715623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 387
Target Start/End: Complemental strand, 35198272 - 35198211
Alignment:
Q  326 agaaaatgaattatttgaacgtaatcacatgtgtcagtgtcatgttagtgtccgacaccgac 387  Q
    ||||||||||||| ||||| ||||||||||||| | ||||| ||||  |||| |||||||||    
T  35198272 agaaaatgaattaattgaatgtaatcacatgtgacggtgtcgtgttgttgtcggacaccgac 35198211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 328 - 365
Target Start/End: Complemental strand, 37232193 - 37232156
Alignment:
Q  328 aaaatgaattatttgaacgtaatcacatgtgtcagtgt 365  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  37232193 aaaatgaattatttgaacataatcacatgtgtcggtgt 37232156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 12596476 - 12596431
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  12596476 gtgcaaacagctcaaacgagctgggcctccctcaaggatggccctc 12596431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Complemental strand, 18777065 - 18777020
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  18777065 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctc 18777020  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 28749600 - 28749645
Alignment:
Q  627 gtgcaaacagctcaaccgagctgggcctcccccaaggatggacctc 672  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  28749600 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctc 28749645  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 324 - 360
Target Start/End: Original strand, 20204255 - 20204291
Alignment:
Q  324 tgagaaaatgaattatttgaacgtaatcacatgtgtc 360  Q
    ||||||||||||| |||||||||||||||||||||||    
T  20204255 tgagaaaatgaatcatttgaacgtaatcacatgtgtc 20204291  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 8093842 - 8093883
Alignment:
Q  326 agaaaatgaattatttgaacgtaatcacatgtgtcagtgtca 367  Q
    ||||||||||| |||||||  |||||||||||||||||||||    
T  8093842 agaaaatgaatgatttgaatataatcacatgtgtcagtgtca 8093883  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 707 - 744
Target Start/End: Original strand, 28749682 - 28749719
Alignment:
Q  707 atcctccaataaaaaataataattatttcatgccctca 744  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  28749682 atcctccaataaaaaaaaataattatttcattccctca 28749719  T

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