View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13653_low_4 (Length: 628)
Name: NF13653_low_4
Description: NF13653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13653_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-159; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 40467419 - 40467131
Alignment:
| Q |
18 |
ggtggatggcataaacaagtcaacctaaatgaaagatacctatagtttagtagctagtttccattcctttaggattttaggatttgacaattttttcaag |
117 |
Q |
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| T |
40467419 |
ggtggatggcataaacaagtcaacctaaatgaaagatacctatagtttagtagctagtttccattcctttaggattttaggatttgacaattttttcaag |
40467320 |
T |
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| Q |
118 |
caagaacgaacaatatgggtggaacaagatagggtttcacgagctcatcacatacagtacgttccaaagtgtgtgacaaaagtttcaagactagctatgg |
217 |
Q |
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| T |
40467319 |
caagaacgaacaatatgggtggaacaagatagggtttcacgagctcatcacatacagtacgttccaaagtgtgtgacaaaagtttcaagactagctatgg |
40467220 |
T |
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| Q |
218 |
gtggatcacgagtgcaataagagaataagtttcaaaactattttttaaaagagcaaaatatactagaatataagtttcaatccaaattg |
306 |
Q |
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| T |
40467219 |
gtggatcacgagtgcaataagagaataagtttcaaaactattttttaaaagagcaaaatatactagaatataagtttcaatcctaattg |
40467131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 418 - 624
Target Start/End: Complemental strand, 40467006 - 40466800
Alignment:
| Q |
418 |
tatatatctttcatctagttgatatctcactagcaactcacacttgaacttcaacacggttgatttcttgtgtttaacttacacatgttgaagattaact |
517 |
Q |
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| T |
40467006 |
tatatatctttcatctagttgatatctcactagcaactcacacttgaacttcaacacggttgatttcttgtgtttaacttacacatgttgaagattaact |
40466907 |
T |
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| Q |
518 |
atctaaagagcaaacaattacatcttcattaaaacctaaaaatattgagcatatagatcacttttcttgtatatcttttaataaacgctcacgacattca |
617 |
Q |
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| T |
40466906 |
atcgaaagagcaaacaatcatatcttcattaaaacctaaaaatattgagcatataaatcacttttcttgtatatcttttaataaatactcacgacattca |
40466807 |
T |
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| Q |
618 |
tctcact |
624 |
Q |
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| T |
40466806 |
tttcact |
40466800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 347 - 393
Target Start/End: Complemental strand, 40467072 - 40467026
Alignment:
| Q |
347 |
gttattaacattttgccaaaacttgaaagtattgagtatataaatca |
393 |
Q |
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| T |
40467072 |
gttattaccattttgccaaaacttgaaagtattgagtatataaatca |
40467026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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