View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13653_low_7 (Length: 520)
Name: NF13653_low_7
Description: NF13653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13653_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Complemental strand, 29934186 - 29933674
Alignment:
| Q |
1 |
gcgttcacacagtcggtccttttgtggatgttggattgagattagacgattcaaattttaagatcgatattttcaattttataaatattaaaatcgtcat |
100 |
Q |
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| T |
29934186 |
gcgttcacacagtcggtccttttgtggatgttggattgagattagaccattcaaattttaagatcgatattttaaattttataaatattaaaatgggcat |
29934087 |
T |
|
| Q |
101 |
tgaattatggatcgtcatatcctttctcgattcaatggtcgagtatgtgtcaattgcgtgaatgcaaaggattgtcggctgcatgcaattgaattcataa |
200 |
Q |
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| T |
29934086 |
tgaattatggatcgtcatatcctttctcgactcaatggtcaagtatgtgtcaactgcgtgaatgcaaaggattgttgactgcatgcaattgaattcataa |
29933987 |
T |
|
| Q |
201 |
atatatttgacccattataaattgttctgaatgttgtgttcttctttttgtaggatattcaccatcaaggaaaagaattgaaagaggctccagctcctgt |
300 |
Q |
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| T |
29933986 |
atatatttgacccattataaattgttctgaatgttgtgttcttctttttgtaggatattcaccatcaaggaaaagaattgaaagaggctccagctcctgt |
29933887 |
T |
|
| Q |
301 |
tggttatcattgagtcactgtttttgtcnnnnnnnnnttatcaaaatatagtaannnnnnnnnnnnnnnnnnnnnngtctctaaactttcaatttgtgct |
400 |
Q |
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| T |
29933886 |
tggttatcattgagtcactgtttttgtcaaaaaaaaattatcaaaatatagtaatttcttttttctagccttttttgtctctaaactttcaatttgtgct |
29933787 |
T |
|
| Q |
401 |
tgaattgttcaataaataaaatgtattttcagtgtgcattttgtaacctgaaagtttatcaatacacaatatctcacccaatcaaggaattgtttggtgg |
500 |
Q |
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| T |
29933786 |
tgaattgttcaataaataaaatgtattttcagtgtgcattttgtaacctgaaagtttatcaatacacaatatctcacccaatcaaggaattgtttggtgg |
29933687 |
T |
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| Q |
501 |
tcttggtgatgat |
513 |
Q |
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| T |
29933686 |
tcttggtgatgat |
29933674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 226 - 317
Target Start/End: Complemental strand, 29931382 - 29931291
Alignment:
| Q |
226 |
tctgaatgttgtgttcttctttttgtaggatattcaccatcaaggaaaagaattgaaagaggctccagctcctgttggttatcattgagtca |
317 |
Q |
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| T |
29931382 |
tctgaatgttgtgttcatctttttgtaggatattcaccatcaaggaaaagaactgaaagaggctccagctcctattggttatcattgagtca |
29931291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 380 - 458
Target Start/End: Complemental strand, 29931231 - 29931153
Alignment:
| Q |
380 |
tctaaactttcaatttgtgcttgaattgttcaataaataaaatgtattttcagtgtgcattttgtaacctgaaagttta |
458 |
Q |
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||||||||||||||| ||| ||||| |||||||||||||||||| ||||| | |||||||| || |||||||||||| |
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| T |
29931231 |
tctaaactttcaattcgtgtcggaattcttcaataaataaaatgtactttcaatctgcattttatatcctgaaagttta |
29931153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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