View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13653_low_9 (Length: 430)
Name: NF13653_low_9
Description: NF13653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13653_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 17 - 426
Target Start/End: Original strand, 40517484 - 40517893
Alignment:
| Q |
17 |
atcatcacaagcaacatgataaagatgaccacaatctggaagtaacctcaacatgtcactttctttataatctcctaagcaaatagagcaactaattgaa |
116 |
Q |
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| T |
40517484 |
atcaacacaagcaacatgataaagatgaccacaatctggaagtaacctcaacatgtcactttctttataatctcctaagcaaatagagcaactaattgaa |
40517583 |
T |
|
| Q |
117 |
gttgaagaaccattcttctgaatttgagagtataacagtttcgggtatccttcaaaacttgtgtcggtgtgatgacgaagtccttgttccatgattgagt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40517584 |
gttgaagaaccattcttctgaatttgagagtataacagtttcgggtatccttcaaaacttgtgtcggtgtgatgacgaagtccttgttccatgattgagt |
40517683 |
T |
|
| Q |
217 |
cttcatgacgatgtggtggaaaaccagacaaaatattgagaatgtttcgacttcgtgaactacgaagtcgaacacatgcaataactattgaaagaaccaa |
316 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40517684 |
cttcatgacgatgtggtggaaaaccggacaaaatattgagaatgtttcgacttcgtgaactacgaagtcgaacacatgcaataactattgaaagaaccaa |
40517783 |
T |
|
| Q |
317 |
gaatacgagaccaaatacaagtattaagatatatgtgaacccatttgcgtcaaaaccgttgttgttgttgtgtggaggttccgaggtgccgttgttgatg |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
40517784 |
gaatacgagaccaaatacaagtattaagatatatgtgaacccatttgcgtcaaaaccgttgttgttgttgtgtggaggttccgaggtgccgttgttgtcg |
40517883 |
T |
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| Q |
417 |
atgtccatct |
426 |
Q |
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|||| ||||| |
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| T |
40517884 |
atgttcatct |
40517893 |
T |
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