View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13654_low_2 (Length: 291)
Name: NF13654_low_2
Description: NF13654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13654_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 5 - 275
Target Start/End: Original strand, 27476078 - 27476347
Alignment:
| Q |
5 |
aaataagatgtgatcaagtatagcctcatatttgttcatgatttaattagcgtcactaattttgtaaacatgcttcagatatgttttcttcattatgata |
104 |
Q |
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| T |
27476078 |
aaataagatgtgatcaagtatagcctcatatttgttcatgatttaattagcgtcaataattttgtaagcatgcttcagacatgttttcttcattatgata |
27476177 |
T |
|
| Q |
105 |
atgccgatgtgaagctggtatgtgactctaaggccatggataacaattgatcaacagaaaccattctacatgtctgtggtttgtactttcaagtctatca |
204 |
Q |
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| T |
27476178 |
atgccgatgtgaagctggtatgtgactctaaggacatggataacaatagatcaacataaaccattctacatgtctgtgg-ttgtactttcaagtctatca |
27476276 |
T |
|
| Q |
205 |
attatatgacgcttctgcacaagaattatgcattatctatctactacaccatttgaagtatatccattcat |
275 |
Q |
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||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27476277 |
attatatgatgcttctgctcaagaattatgcattatctatctactacaccatttgaagtatatccattcat |
27476347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 27468841 - 27469117
Alignment:
| Q |
1 |
taccaaataagatgtgatcaagtatagcctcatatttgttcatgatttaattagcgtcact----aattttgtaaacatgcttcagatatgttttcttca |
96 |
Q |
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|||||||| ||||||| |||||| |||||||||||| |||||||||||||| | || ||| |||||||||||||||||||||| |||||||||||| |
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| T |
27468841 |
taccaaatgagatgtgctcaagtgcagcctcatatttcttcatgatttaattggtgt-acttcataattttgtaaacatgcttcagacatgttttcttca |
27468939 |
T |
|
| Q |
97 |
ttatgataatgccgatgtgaagctggtatgtgactctaaggccatggataacaattgatcaacagaaaccattctacatgtctgtggtttgtactttcaa |
196 |
Q |
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| T |
27468940 |
ttatgataatgccgatgtgaagctggtaagtgactataaggccatggataacaatagatcaactcaaaccattctacatgtctgtgg-ttctactttcaa |
27469038 |
T |
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| Q |
197 |
gtctatcaattatatgacgcttctgcacaagaattatgcattatctatctactacaccatttgaagtatatccattcat |
275 |
Q |
| |
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||||||| || |||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27469039 |
gtctatctatcatatgatgcttctactcaagaattatgcattatctatctactacaccatttgaagtatatccattcat |
27469117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 27524160 - 27523883
Alignment:
| Q |
1 |
taccaaataagatgtgatcaagtatagcctcatatttgttcatgatttaattag----cgtcactaattttgtaaacatgcttcagatatgttttcttca |
96 |
Q |
| |
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|||||||| ||||||| |||||| | | |||||||| |||||||||||||| | | ||| |||||| |||||||||||||||| |||||||||||| |
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| T |
27524160 |
taccaaatgagatgtgctcaagtgcaacgtcatatttcttcatgatttaattggtttccttca-taatttcgtaaacatgcttcagacatgttttcttca |
27524062 |
T |
|
| Q |
97 |
ttatgataatgccgatgtgaagctggtatgtgactctaaggccatggataacaattgatcaacagaaaccattctacatgtctgtggtttgtactttcaa |
196 |
Q |
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|||||||||||| ||||| |||||||| ||| || | ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27524061 |
ttatgataatgctgatgtccagctggtaagtgtctacatggctatggataacaattgatcaacataaaccattctacatgtctgtggtttgtactttcaa |
27523962 |
T |
|
| Q |
197 |
gtctatcaattatatgacgcttctgcacaagaattatgcattatctatctactacaccatttgaagtatatccattcat |
275 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27523961 |
gtctatcaattatatgatgcttttgcacaagaattatgcattatctatctactacaccatttgaagtatatccattcat |
27523883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 61 - 275
Target Start/End: Complemental strand, 27489684 - 27489471
Alignment:
| Q |
61 |
taattttgtaaacatgcttcagatatgttttcttcattatgataatgccgatgtgaagctggtatgtgactctaaggccatggataacaattgatcaaca |
160 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||| |||| |||||| ||||||| |||| | |||||| ||| |||| || ||||| || |
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| T |
27489684 |
taattttgtaaacatgctttagacatgttttcttcattatgaaaatgtcgatgtccagctggttagtgattataaggcaatgtataattatggatcatca |
27489585 |
T |
|
| Q |
161 |
gaaaccattctacatgtctgtggtttgtactttcaagtctatcaattatatgacgcttctgcacaagaattatgcattatctatctactacaccatttga |
260 |
Q |
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| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27489584 |
taggccattctacatgtctgtggtt-gtactttcaagtctatcaattatatgatgcttctgcacaagaattatgcattatctatctactacaccatttga |
27489486 |
T |
|
| Q |
261 |
agtatatccattcat |
275 |
Q |
| |
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||||||||||||||| |
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| T |
27489485 |
agtatatccattcat |
27489471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 26 - 277
Target Start/End: Complemental strand, 27514504 - 27514251
Alignment:
| Q |
26 |
agcctcatatttgttcatgatttaattagcgtcact----aattttgtaaacatgcttcagatatgttttcttcattatgataatgccgatgtgaagctg |
121 |
Q |
| |
|
|||||||||||| |||||||||||||| | || ||| |||||||||||||||||| ||| ||||||||| |||||||||||||| ||||| |||| |
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| T |
27514504 |
agcctcatatttcttcatgatttaattggtgt-acttcataattttgtaaacatgctttagacatgttttctgcattatgataatgctgatgtccagcta |
27514406 |
T |
|
| Q |
122 |
gtatgtgactctaaggccatggataacaattgatcaacagaaaccattctacatgtctgtggtttgtactttcaagtctatcaattatatgacgcttctg |
221 |
Q |
| |
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||| |||||| ||| ||||| ||||||||| | ||||| ||||||||||| |||| ||||| || |||||||||||||||||||||||||| |||| || |
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| T |
27514405 |
gtaagtgactataatgccatagataacaatataacaacataaaccattctatatgtttgtggctt-tactttcaagtctatcaattatatgatgcttatg |
27514307 |
T |
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| Q |
222 |
cacaagaattatgcattatctatctactacaccatttgaagtatatccattcatct |
277 |
Q |
| |
|
| ||||||||||||||||||||||||||||| || ||||||| ||||||||||||| |
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| T |
27514306 |
ctcaagaattatgcattatctatctactacaacacttgaagtttatccattcatct |
27514251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 5 - 160
Target Start/End: Complemental strand, 27503554 - 27503399
Alignment:
| Q |
5 |
aaataagatgtgatcaagtatagcctcatatttgttcatgatttaattagcgtcactaattttgtaaacatgcttcagatatgttttcttcattatgata |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27503554 |
aaataagatgtgatcaagtatagcctcatatttgttcatgatttaattagcgtcaataattttgtaaacatgcttcagacatgttttcttcattatgata |
27503455 |
T |
|
| Q |
105 |
atgccgatgtgaagctggtatgtgactctaaggccatggataacaattgatcaaca |
160 |
Q |
| |
|
||| ||||| ||||| || |||||| |||||| |||||||||||| |||||||| |
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|
| T |
27503454 |
atgttgatgtccagctgataagtgactataaggcaatggataacaatagatcaaca |
27503399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 61 - 248
Target Start/End: Complemental strand, 27508481 - 27508295
Alignment:
| Q |
61 |
taattttgtaaacatgcttcagatatgttttcttcattatgataatgccgatgtgaagctggtatgtgactctaaggccatggataacaattgatcaaca |
160 |
Q |
| |
|
||||||| |||||||||| ||| |||||||||||||||||| ||||| ||||| |||| ||| |||||| ||||||||| ||||||||| |||||||| |
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| T |
27508481 |
taattttataaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagctagtaagtgactataaggccatagataacaatagatcaaca |
27508382 |
T |
|
| Q |
161 |
gaaaccattctacatgtctgtggtttgtactttcaagtctatcaattatatgacgcttctgcacaagaattatgcattatctatctac |
248 |
Q |
| |
|
||||||||||||||||| ||||| || ||||| |||||||||||||||||||| |||||| | |||||||||||||||||||| |||| |
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|
| T |
27508381 |
gaaaccattctacatgtttgtgg-ttctacttacaagtctatcaattatatgatgcttcttctcaagaattatgcattatctagctac |
27508295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 61 - 177
Target Start/End: Original strand, 27556965 - 27557081
Alignment:
| Q |
61 |
taattttgtaaacatgcttcagatatgttttcttcattatgataatgccgatgtgaagctggtatgtgactctaaggccatggataacaattgatcaaca |
160 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||| || ||| | |||||||| |||| | ||| || |||||||||||| |||||||| |
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| T |
27556965 |
taattttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttccagctggtaagtgattataacgcaatggataacaatagatcaaca |
27557064 |
T |
|
| Q |
161 |
gaaaccattctacatgt |
177 |
Q |
| |
|
|||||||||||||||| |
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| T |
27557065 |
taaaccattctacatgt |
27557081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 177
Target Start/End: Original strand, 27497858 - 27497971
Alignment:
| Q |
65 |
tttgtaaacatgcttcagatatgttttcttcattatgataatgccgatgtgaagctggtatgtga-ctctaaggccatggataacaattgatcaacagaa |
163 |
Q |
| |
|
|||||||||| |||| || ||||||||||||||||||||||| ||||| |||||||| |||| | |||||| ||||||||||| |||||||| || |
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| T |
27497858 |
tttgtaaacaggcttaggacatgttttcttcattatgataatgttgatgtctagctggtaagtgagatataaggcagtggataacaatagatcaacataa |
27497957 |
T |
|
| Q |
164 |
accattctacatgt |
177 |
Q |
| |
|
|||||||||||||| |
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|
| T |
27497958 |
accattctacatgt |
27497971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 27506319 - 27506280
Alignment:
| Q |
61 |
taattttgtaaacatgcttcagatatgttttcttcattat |
100 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||| |
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|
| T |
27506319 |
taattttgtaaacatgtttcagacatgttttcttcattat |
27506280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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