View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13655_high_11 (Length: 349)
Name: NF13655_high_11
Description: NF13655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13655_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 28727377 - 28727717
Alignment:
| Q |
1 |
acaagaagaagaaagagttcataatcatgaaactccataatgatcaagaagtgaagataactttgtctgatgattggaaaaaagtgaaaattcaacatga |
100 |
Q |
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| T |
28727377 |
acaagaagaagaaagagttcataatcatgaaactccataatgatcaagaagtgaagataacttcgtctgatgactggaaaaaagtgaaaattcaacatga |
28727476 |
T |
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| Q |
101 |
gagacaaatggctcgactccaactcgagcaaataaaaaacaccgttggatttaatgatagcatggatgctatgtatgaattttacaacctccttggttat |
200 |
Q |
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| T |
28727477 |
gagacaaatggcttgactccaactcgagcaaataaaaaacaccgctggatttaacgataacatggatgctatgtatgaattttacaacctccttggttat |
28727576 |
T |
|
| Q |
201 |
tctgtaacttatcccacatacaa-aaggacacgatgttttggtagcgaggctaagttaagaatgttttctttatggttcttgagatattgagatgaagtg |
299 |
Q |
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| T |
28727577 |
tctgtaacttatcccacatacaacaaggacacgatgttttggtagcgaggctaagttaagaatgttttctttatggttcttgagatattgagatgaagtg |
28727676 |
T |
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| Q |
300 |
acatttcttagtatagattatcttccattttgatattcttc |
340 |
Q |
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| T |
28727677 |
acatttctcagtatagattatcttcaattttcattttcttc |
28727717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 258 - 340
Target Start/End: Original strand, 28733846 - 28733928
Alignment:
| Q |
258 |
agaatgttttctttatggttcttgagatattgagatgaagtgacatttcttagtatagattatcttccattttgatattcttc |
340 |
Q |
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| T |
28733846 |
agaatgttttctttatggttcttgagatattgagatgaagtgacatttctcagtatagattatcttccattttgattttcttc |
28733928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 97 - 330
Target Start/End: Original strand, 28724982 - 28725220
Alignment:
| Q |
97 |
atgagagacaaatggctcgactccaactcgagcaaataaaaaacaccgttggatttaatgatagcatggatgctatgtatgaattttacaacctccttgg |
196 |
Q |
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||||||||||||| |||||||||||||| |||||||| ||||||||| ||| ||||| || |||| ||||| || |||| || | || ||| |||| |
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| T |
28724982 |
atgagagacaaattgctcgactccaacttgagcaaattcaaaacaccgctggctttaacgacgacatgaatgctttgcatgatttccagaagctcgttgg |
28725081 |
T |
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| Q |
197 |
ttattctgtaacttatcccacatacaaaaggacacgatgttttggtagcgaggctaag-----ttaagaatgttttctttatggttcttgagatattgag |
291 |
Q |
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| T |
28725082 |
gtgttccatgacttatcccacatacacaaggatacaatgttttggtattgaagctaaccaaaatgaagaacgttttctttatggttcttgaaatattgag |
28725181 |
T |
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| Q |
292 |
atgaagtgacatttcttagtatagattatcttccatttt |
330 |
Q |
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| T |
28725182 |
atgaagtaacatttctcaatatagattatctttcatttt |
28725220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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