View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13655_high_13 (Length: 333)
Name: NF13655_high_13
Description: NF13655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13655_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 211 - 323
Target Start/End: Complemental strand, 27179103 - 27178991
Alignment:
| Q |
211 |
tagctaactcacgaactactctctctcatctcccttttactgttggactcaacaaatttatacatattttttatcaattgaaatttgtacattttctatg |
310 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27179103 |
tagccaactcacgaactactctctctcatctcccttttgctgttggactcaacaaatttatatatattttttatcaattgaaatttgtacattttctatg |
27179004 |
T |
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| Q |
311 |
caagcttcctatg |
323 |
Q |
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|||||||| |||| |
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| T |
27179003 |
caagcttcatatg |
27178991 |
T |
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Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 27179315 - 27179239
Alignment:
| Q |
1 |
gattcatcatcaatatgatggctagtccattccacttatccatgagttatgaataagctgcactcctaacctctttc |
77 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27179315 |
gattcatcatcaatgtgatggctagtccattccacttatccatgagttatgaataagctgcactcctaacctctttc |
27179239 |
T |
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