View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13655_high_4 (Length: 491)

Name: NF13655_high_4
Description: NF13655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13655_high_4
NF13655_high_4
[»] chr8 (14 HSPs)
chr8 (71-284)||(15049020-15049231)
chr8 (330-460)||(15047850-15047979)
chr8 (10-78)||(15049247-15049315)
chr8 (330-380)||(15030281-15030331)
chr8 (331-381)||(15067307-15067357)
chr8 (31-78)||(15049319-15049366)
chr8 (390-440)||(15053007-15053056)
chr8 (331-384)||(13033979-13034032)
chr8 (10-51)||(15049202-15049243)
chr8 (331-380)||(15053109-15053158)
chr8 (390-425)||(15067220-15067255)
chr8 (71-100)||(15049274-15049303)
chr8 (340-381)||(15214092-15214133)
chr8 (390-423)||(15214185-15214218)


Alignment Details
Target: chr8 (Bit Score: 156; Significance: 1e-82; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 71 - 284
Target Start/End: Complemental strand, 15049231 - 15049020
Alignment:
Q  71 tttcaaattaaatatgtaataatagccattgtaataatatagaataacaacaactatttgaaagtttccctnnnnnnnnnnncaaataattgaaagttga 170  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||           ||||| ||||||||||||    
T  15049231 tttcaaattaaatatgtaacaatagccattgtaataatatacaataacaacaactatttgaaagtttccctaaaaaaaaa--caaattattgaaagttga 15049134  T
Q  171 tatcattgacattttctgaggggccgtcatcaatttttatttttcaaaaccatttcaataacaacaatatatttttggagggttgtcatcatagattttt 270  Q
    || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15049133 tagcattgacattttctgaggggccgtcataaatttttatttttcaaaaccatttcaataacaacaatatatttttggagggttgtcatcatagattttt 15049034  T
Q  271 ttgttgtatatgtc 284  Q
    ||||||||||||||    
T  15049033 ttgttgtatatgtc 15049020  T

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Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 330 - 460
Target Start/End: Complemental strand, 15047979 - 15047850
Alignment:
Q  330 tgagtgaagggcaccctttaaatgataggcttgatccacttaatttttcttctatcattgatcccctatttctccctttcgaaagaaaaactctctgtta 429  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  15047979 tgagtgaaggtcaccctttaaatgataggcttgatccacttaatttttcttctatcattgatcccctatttctccctttcgaaagaaaaactctctgtt- 15047881  T
Q  430 aacatttactgctatgattatatttccaatc 460  Q
    |||||||||||||||||||||||||||||||    
T  15047880 aacatttactgctatgattatatttccaatc 15047850  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 15049315 - 15049247
Alignment:
Q  10 caataatagtcctttcaaattaaatatgtaataatagccattatgatatgtaataacaacatttcaaat 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15049315 caataatagtcctttcaaattaaatatgtaataatagccattatgatatgtaataacaacatttcaaat 15049247  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 330 - 380
Target Start/End: Complemental strand, 15030331 - 15030281
Alignment:
Q  330 tgagtgaagggcaccctttaaatgataggcttgatccacttaatttttctt 380  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  15030331 tgagttaagggcaccctttaaatgataggcttaatccacttaatttttctt 15030281  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 15067357 - 15067307
Alignment:
Q  331 gagtgaagggcaccctttaaatgataggcttgatccacttaatttttcttc 381  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  15067357 gagttaagggcaccccttaaatgataggcttgatccacttaatttttcttc 15067307  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 15049366 - 15049319
Alignment:
Q  31 aaatatgtaataatagccattatgatatgtaataacaacatttcaaat 78  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  15049366 aaatatgcaataatagccattatgatatgtaataacaacatttaaaat 15049319  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 390 - 440
Target Start/End: Complemental strand, 15053056 - 15053007
Alignment:
Q  390 atcccctatttctccctttcgaaagaaaaactctctgttaaacatttactg 440  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  15053056 atcccctatttctccctttcgaaagaaaaactctctg-tcaacatttactg 15053007  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 384
Target Start/End: Complemental strand, 13034032 - 13033979
Alignment:
Q  331 gagtgaagggcaccctttaaatgataggcttgatccacttaatttttcttctat 384  Q
    |||| ||||||  ||||||||||||||| |||||||||||||||||||||||||    
T  13034032 gagttaagggccacctttaaatgataggtttgatccacttaatttttcttctat 13033979  T

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Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 15049243 - 15049202
Alignment:
Q  10 caataatagtcctttcaaattaaatatgtaataatagccatt 51  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  15049243 caataatagtcctttcaaattaaatatgtaacaatagccatt 15049202  T

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Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 380
Target Start/End: Complemental strand, 15053158 - 15053109
Alignment:
Q  331 gagtgaagggcaccctttaaatgataggcttgatccacttaatttttctt 380  Q
    |||| |||||||||| ||||||||||||||||||||||| ||||||||||    
T  15053158 gagttaagggcaccccttaaatgataggcttgatccactgaatttttctt 15053109  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 425
Target Start/End: Complemental strand, 15067255 - 15067220
Alignment:
Q  390 atcccctatttctccctttcgaaagaaaaactctct 425  Q
    ||||||||||||||||||||||||||||||||||||    
T  15067255 atcccctatttctccctttcgaaagaaaaactctct 15067220  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 100
Target Start/End: Complemental strand, 15049303 - 15049274
Alignment:
Q  71 tttcaaattaaatatgtaataatagccatt 100  Q
    ||||||||||||||||||||||||||||||    
T  15049303 tttcaaattaaatatgtaataatagccatt 15049274  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 15214092 - 15214133
Alignment:
Q  340 gcaccctttaaatgataggcttgatccacttaatttttcttc 381  Q
    |||| ||||||||||||| ||||||||| |||||||||||||    
T  15214092 gcacactttaaatgatagacttgatccatttaatttttcttc 15214133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 423
Target Start/End: Original strand, 15214185 - 15214218
Alignment:
Q  390 atcccctatttctccctttcgaaagaaaaactct 423  Q
    ||||||||||||||||||||||||| ||||||||    
T  15214185 atcccctatttctccctttcgaaagtaaaactct 15214218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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