View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13655_high_6 (Length: 441)

Name: NF13655_high_6
Description: NF13655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13655_high_6
NF13655_high_6
[»] chr3 (1 HSPs)
chr3 (1-432)||(9213706-9214137)
[»] chr4 (9 HSPs)
chr4 (191-432)||(25159998-25160239)
chr4 (189-432)||(25180225-25180468)
chr4 (189-432)||(25168557-25168800)
chr4 (189-432)||(25252466-25252709)
chr4 (356-427)||(24986310-24986381)
chr4 (356-427)||(25000782-25000853)
chr4 (356-427)||(25046713-25046784)
chr4 (359-427)||(25189340-25189408)
chr4 (186-244)||(25046543-25046601)
[»] chr2 (3 HSPs)
chr2 (180-322)||(42156542-42156684)
chr2 (186-321)||(42167035-42167170)
chr2 (361-432)||(42167210-42167281)


Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 9214137 - 9213706
Alignment:
Q  1 cctattacaccattttgagtttcctgcacatgtaacatataaatactttagttattcgttaccgtttaatatctttaaatagaaatataaagaaaccgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9214137 cctattacaccattttgagtttcctgcacatgtaacatataaatactttagttattcgttaccgtttaatatctttaaatagaaatataaagaaaccgtt 9214038  T
Q  101 atcgataaatcatctactcgttgatactttatatggcaaaagtataacaattgtttgagctataagattctcaacaaagtaacatacctgatactttgtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9214037 atcgataaatcatctactcgttgatactttatatggcaaaagtataacaattgtttgagctataagattctcaacaaagtaacatacctgatactttgtc 9213938  T
Q  201 ttgtacacatttacagcttcggcatgagctagaagttggtagtgtgtgactatatagggctcaatcgcagaatcaccaccggtgcaatttggattcaacc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9213937 ttgtacacatttacagcttcggcatgagctagaagttggtagtgtgtgactatatagggctcaatcgcagaatcaccaccggtgcaatttggattcaacc 9213838  T
Q  301 aactagaacaacgacctggtgccattcgtccatttgcatagccattttgactgtaactccatggttcattcaaagtaacccaatatttcaccctatcacc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9213837 aactagaacaacgacctggtgccattcgtccatttgcatagccattttgactgtaactccatggttcattcaaagtaacccaatatttcaccctatcacc 9213738  T
Q  401 aaactccttaaagcaaagttcagcatattctt 432  Q
    ||||||||||||||||||||||||||| ||||    
T  9213737 aaactccttaaagcaaagttcagcatagtctt 9213706  T

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Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 191 - 432
Target Start/End: Original strand, 25159998 - 25160239
Alignment:
Q  191 atactttgtcttgtacacatttacagcttcggcatgagctagaagttggtagtgtgtgactatatagggctcaatcgcagaatcaccaccggtgcaattt 290  Q
    ||||||| ||||||||||||  || ||| ||||||| || ||||||||||| ||||| || | ||||||||| |||||||||||||| || || ||||||    
T  25159998 atactttttcttgtacacatcaacggctgcggcatgtgcaagaagttggtaatgtgttaccaaatagggctcgatcgcagaatcaccgccagtacaattt 25160097  T
Q  291 ggattcaaccaactagaacaacgacctggtgccattcgtccatttgcatagccattttgactgtaactccatggttcattcaaagtaacccaatatttca 390  Q
    |||||||||||||| || |||||||| ||||||||||| |||||||||||||||||||| || || |||||||| || ||||||||||||||||| || |    
T  25160098 ggattcaaccaactggagcaacgacccggtgccattcgcccatttgcatagccattttggctatagctccatggctcgttcaaagtaacccaatacttga 25160197  T
Q  391 ccctatcaccaaactccttaaagcaaagttcagcatattctt 432  Q
    | ||||||||||| ||||| || |||||||| ||||| ||||    
T  25160198 ctctatcaccaaattccttgaaacaaagttccgcatagtctt 25160239  T

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Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 189 - 432
Target Start/End: Original strand, 25180225 - 25180468
Alignment:
Q  189 tgatactttgtcttgtacacatttacagcttcggcatgagctagaagttggtagtgtgtgactatatagggctcaatcgcagaatcaccaccggtgcaat 288  Q
    ||||| || |||||||||||||| |||||| | ||||||||||||||||| || ||||  |||| ||| || ||  |  ||||||| |||||||||||||    
T  25180225 tgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatgtgcaactaaataaggttcggttccagaatctccaccggtgcaat 25180324  T
Q  289 ttggattcaaccaactagaacaacgacctggtgccattcgtccatttgcatagccattttgactgtaactccatggttcattcaaagtaacccaatattt 388  Q
    ||||||| ||||||  |||||| |||||||||||||||   ||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||| |||    
T  25180325 ttggattaaaccaagaagaacatcgacctggtgccattgcgccatttgcatatccattttgactgtaactccatggctcattcaaagttatccaatgttt 25180424  T
Q  389 caccctatcaccaaactccttaaagcaaagttcagcatattctt 432  Q
     || ||||| |||||    |||||||||||||| ||||| ||||    
T  25180425 tactctatctccaaatgttttaaagcaaagttccgcatagtctt 25180468  T

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Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 189 - 432
Target Start/End: Original strand, 25168557 - 25168800
Alignment:
Q  189 tgatactttgtcttgtacacatttacagcttcggcatgagctagaagttggtagtgtgtgactatatagggctcaatcgcagaatcaccaccggtgcaat 288  Q
    |||||||| |||||||||| ||| ||| || | ||||||||||||||||| || ||||  |||| ||| || ||| |  |||||||||| ||||||||||    
T  25168557 tgatacttggtcttgtacaaattaacaactgctgcatgagctagaagttgataatgtgcaactaaataaggttcagttccagaatcaccgccggtgcaat 25168656  T
Q  289 ttggattcaaccaactagaacaacgacctggtgccattcgtccatttgcatagccattttgactgtaactccatggttcattcaaagtaacccaatattt 388  Q
    ||||||||||||||  ||| || ||||| |||||||||   ||||||||||| |||| |||||||||| ||||||||||||||||||| | ||||| |||    
T  25168657 ttggattcaaccaagaagagcatcgaccaggtgccatttcaccatttgcatacccatcttgactgtaagtccatggttcattcaaagttatccaatgttt 25168756  T
Q  389 caccctatcaccaaactccttaaagcaaagttcagcatattctt 432  Q
     || ||||| |||||    || ||||||||||| ||||| ||||    
T  25168757 tactctatctccaaatgttttgaagcaaagttccgcatagtctt 25168800  T

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Target: chr4; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 189 - 432
Target Start/End: Complemental strand, 25252709 - 25252466
Alignment:
Q  189 tgatactttgtcttgtacacatttacagcttcggcatgagctagaagttggtagtgtgtgactatatagggctcaatcgcagaatcaccaccggtgcaat 288  Q
    |||||||| |||||||||| ||| ||| || | ||||||||||||||||| || ||||  |||| ||| || ||  |  |||||||||| ||||||||||    
T  25252709 tgatacttggtcttgtacaaattaacaactgctgcatgagctagaagttgataatgtgcaactaaataaggttctgttccagaatcaccgccggtgcaat 25252610  T
Q  289 ttggattcaaccaactagaacaacgacctggtgccattcgtccatttgcatagccattttgactgtaactccatggttcattcaaagtaacccaatattt 388  Q
    ||||||||||||||  ||| || || ||||||||||||   ||||||||||| |||| |||||||||| ||||||||||||||||||| | ||||| |||    
T  25252609 ttggattcaaccaagaagagcatcgtcctggtgccatttcaccatttgcatacccatcttgactgtaagtccatggttcattcaaagttatccaatgttt 25252510  T
Q  389 caccctatcaccaaactccttaaagcaaagttcagcatattctt 432  Q
     || ||||| |||||    || ||||||||||| ||||| ||||    
T  25252509 tactctatctccaaatgttttgaagcaaagttccgcatagtctt 25252466  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 356 - 427
Target Start/End: Original strand, 24986310 - 24986381
Alignment:
Q  356 actccatggttcattcaaagtaacccaatatttcaccctatcaccaaactccttaaagcaaagttcagcata 427  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||| |||||  ||||||||||||||||    
T  24986310 actccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcata 24986381  T

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Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 356 - 427
Target Start/End: Complemental strand, 25000853 - 25000782
Alignment:
Q  356 actccatggttcattcaaagtaacccaatatttcaccctatcaccaaactccttaaagcaaagttcagcata 427  Q
    ||||||||||||||||||||||| ||||| |||||||||||| ||||| ||||| |||||||||||||||||    
T  25000853 actccatggttcattcaaagtaatccaatgtttcaccctatcgccaaattccttgaagcaaagttcagcata 25000782  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 427
Target Start/End: Original strand, 25046713 - 25046784
Alignment:
Q  356 actccatggttcattcaaagtaacccaatatttcaccctatcaccaaactccttaaagcaaagttcagcata 427  Q
    ||||| ||||||||||||||||  ||||  |||||||||||||||||| ||||| |||||||| ||||||||    
T  25046713 actccttggttcattcaaagtagtccaacgtttcaccctatcaccaaattccttgaagcaaagatcagcata 25046784  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 427
Target Start/End: Original strand, 25189340 - 25189408
Alignment:
Q  359 ccatggttcattcaaagtaacccaatatttcaccctatcaccaaactccttaaagcaaagttcagcata 427  Q
    ||||||||| || ||||||||||| || ||||| ||||| ||||| ||||| |||||||| ||||||||    
T  25189340 ccatggttcgttaaaagtaacccagtacttcactctatctccaaattccttgaagcaaagatcagcata 25189408  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 25046543 - 25046601
Alignment:
Q  186 acctgatactttgtcttgtacacatttacagcttcggcatgagctagaagttggtagtg 244  Q
    ||||||||||| ||||||||||  ||||||||| | | |||||| ||||||||||||||    
T  25046543 acctgatacttggtcttgtacaattttacagctgcagaatgagcaagaagttggtagtg 25046601  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 180 - 322
Target Start/End: Original strand, 42156542 - 42156684
Alignment:
Q  180 taacatacctgatactttgtcttgtacacatttacagcttcggcatgagctagaagttggtagtgtgtgactatatagggctcaatcgcagaatcaccac 279  Q
    ||||| |||||||||||  ||||||||||||  ||| || |||||||||| ||||||||||  || |  ||||| || |||||  || | ||||||||||    
T  42156542 taacaaacctgatacttcttcttgtacacatggacaactgcggcatgagcgagaagttggtgatgcgaaactatgtaaggctctttccctgaatcaccac 42156641  T
Q  280 cggtgcaatttggattcaaccaactagaacaacgacctggtgc 322  Q
    |||||||||||| | | |||||  ||||||| ||||| |||||    
T  42156642 cggtgcaatttgaactaaaccatttagaacatcgaccaggtgc 42156684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 321
Target Start/End: Original strand, 42167035 - 42167170
Alignment:
Q  186 acctgatactttgtcttgtacacatttacagcttcggcatgagctagaagttggtagtgtgtgactatatagggctcaatcgcagaatcaccaccggtgc 285  Q
    |||||||||||  ||||||||||||  |||||| |||||||||| ||||||||||  || |  || || || || ||  || | ||||||||| ||||||    
T  42167035 acctgatacttcttcttgtacacatcgacagctgcggcatgagcaagaagttggtgatgcgaaacaatgtaaggttctttccctgaatcaccatcggtgc 42167134  T
Q  286 aatttggattcaaccaactagaacaacgacctggtg 321  Q
    |||||| | |||||||  ||||||| ||||| ||||    
T  42167135 aatttgaactcaaccatttagaacatcgaccaggtg 42167170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 432
Target Start/End: Original strand, 42167210 - 42167281
Alignment:
Q  361 atggttcattcaaagtaacccaatatttcaccctatcaccaaactccttaaagcaaagttcagcatattctt 432  Q
    |||| ||||| ||||||| |||||| ||||||||||| |||||||| || || |||||||| ||||| ||||    
T  42167210 atggctcattgaaagtaatccaatacttcaccctatctccaaactctttgaaacaaagttccgcatagtctt 42167281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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