View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13656_high_2 (Length: 525)
Name: NF13656_high_2
Description: NF13656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13656_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 124 - 400
Target Start/End: Complemental strand, 8712866 - 8712594
Alignment:
| Q |
124 |
aaaaggtgaagatgaaaccatcaaacataaatctcaccttggcagatggtacaatcaaatttccttatggcatagtagaattcttgatggtaaaagtaaa |
223 |
Q |
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| T |
8712866 |
aaaaggtgaagatgaaaccaccaaacataaatctcaccttggcagatggtacaatcaaatttccttatggcatagtagaattcttgatggtaaaagtaaa |
8712767 |
T |
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| Q |
224 |
ctaagttatctttttgacagattttgtaatcttggatatgcaagaattaagatcgaaaatgtccacctatccttgaaagatcttttcttgcaaccgctaa |
323 |
Q |
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| T |
8712766 |
ctaagttatctttttgacagattttgtaatcttggatatgcaag----aagatcgaaaatgtccacctatccttgaaagatcttttcttgcaaccgctaa |
8712671 |
T |
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| Q |
324 |
acccatgatcaatgtggaaacaagatcattaatttataagggaatgaaagaaaagaagtcttatcatgtgttcgaaa |
400 |
Q |
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| T |
8712670 |
acccatgatcaatgtggaaacaagataattaatttataagggaatgaaagaaaagaagtcttatcatgtgttcgaaa |
8712594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 124 - 400
Target Start/End: Complemental strand, 9064753 - 9064481
Alignment:
| Q |
124 |
aaaaggtgaagatgaaaccatcaaacataaatctcaccttggcagatggtacaatcaaatttccttatggcatagtagaattcttgatggtaaaagtaaa |
223 |
Q |
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| T |
9064753 |
aaaaggtgaagatgaaaccaccaaacataaatctcaccttggcagatggtacaatcaaatttccttatggcatagtagaattcttgatggtaaaagtaaa |
9064654 |
T |
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| Q |
224 |
ctaagttatctttttgacagattttgtaatcttggatatgcaagaattaagatcgaaaatgtccacctatccttgaaagatcttttcttgcaaccgctaa |
323 |
Q |
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| T |
9064653 |
ctaagttatctttttgacagattttgtaatcttggatatgcaag----aagatcgaaaatgtccacctatccttgaaagatcttttcttgcaaccgctaa |
9064558 |
T |
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| Q |
324 |
acccatgatcaatgtggaaacaagatcattaatttataagggaatgaaagaaaagaagtcttatcatgtgttcgaaa |
400 |
Q |
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| T |
9064557 |
acccatgatcaatgtggaaacaagataattaatttataagggaatgaaagaaaagaagtcttatcatgtgttcgaaa |
9064481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 402 - 469
Target Start/End: Complemental strand, 8712348 - 8712281
Alignment:
| Q |
402 |
gttttaactgatccatttggaagttatccatcaaaagaggtatgtgtgatctaggtataagcatcaaa |
469 |
Q |
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| T |
8712348 |
gttttaactgatccatttggaagttatccatcaaaagaggtatgtgtgatctaggtacaagcatcaaa |
8712281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 402 - 469
Target Start/End: Complemental strand, 9064235 - 9064168
Alignment:
| Q |
402 |
gttttaactgatccatttggaagttatccatcaaaagaggtatgtgtgatctaggtataagcatcaaa |
469 |
Q |
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| T |
9064235 |
gttttaactgatccatttggaagttatccatcaaaagaggtatgtgtgatctaggtacaagcatcaaa |
9064168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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