View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13656_high_5 (Length: 306)
Name: NF13656_high_5
Description: NF13656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13656_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 28826151 - 28826462
Alignment:
| Q |
1 |
accgcatgccgtaaaatctctctactgcaccactatcttttttgtacatacacaattattagtttcagaggacaaccgtaccctaccctactttaactca |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28826151 |
accgcatgccgtaaaatctctccactgcaccactatcttttttgtacatacacaattattagtttcagaggacaaccgtaccctaccctactttaactca |
28826250 |
T |
|
| Q |
101 |
tatttcatttttaattaaatagaattaataaattt----------tattttctttgaaatgtcgtctcagtttgaggtagac----ataaaggaaagaca |
186 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28826251 |
tatttcatttttaa----atagaattaataaatttattttatttttattttctttgaaatgtcgtctcagtttgaggtagacagacataaaggaaagaca |
28826346 |
T |
|
| Q |
187 |
taagttgatgatactgcttgctctagtccctatttaacagtgataagatagtgaaatatggtcacacagtaagttgcgtacgacacgcctcactcaacta |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28826347 |
taagttgatgatactgcttgctctagtccctatttaacagtgataagatagtgaaatatggtcacacagtaagttgcgtacgacacgcctcactcaacta |
28826446 |
T |
|
| Q |
287 |
ccatcaccacccattt |
302 |
Q |
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|||||||||||||||| |
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| T |
28826447 |
ccatcaccacccattt |
28826462 |
T |
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