View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13656_high_6 (Length: 278)

Name: NF13656_high_6
Description: NF13656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13656_high_6
NF13656_high_6
[»] chr5 (17 HSPs)
chr5 (1-261)||(37028893-37029153)
chr5 (1-128)||(524843-524965)
chr5 (58-128)||(931380-931449)
chr5 (46-103)||(19099333-19099392)
chr5 (60-103)||(13423866-13423909)
chr5 (58-103)||(43511618-43511663)
chr5 (59-103)||(138145-138189)
chr5 (60-103)||(29156192-29156235)
chr5 (44-103)||(42291900-42291961)
chr5 (62-103)||(7390419-7390460)
chr5 (58-103)||(17513955-17514000)
chr5 (58-103)||(20975985-20976030)
chr5 (60-103)||(13656212-13656255)
chr5 (61-103)||(33281677-33281719)
chr5 (57-103)||(40956312-40956358)
chr5 (59-92)||(5829386-5829419)
chr5 (58-103)||(10591292-10591337)
[»] chr6 (18 HSPs)
chr6 (1-118)||(31234858-31234971)
chr6 (1-118)||(31243995-31244107)
chr6 (54-118)||(1327589-1327653)
chr6 (47-128)||(32056050-32056129)
chr6 (59-103)||(3748587-3748631)
chr6 (60-103)||(57690-57733)
chr6 (60-103)||(628114-628157)
chr6 (60-103)||(2618357-2618400)
chr6 (60-103)||(12614735-12614778)
chr6 (5-114)||(15035788-15035894)
chr6 (58-103)||(31861001-31861046)
chr6 (58-128)||(1093031-1093104)
chr6 (60-103)||(21946109-21946152)
chr6 (59-101)||(30915387-30915429)
chr6 (58-103)||(1690652-1690697)
chr6 (60-100)||(6360762-6360802)
chr6 (46-103)||(6754192-6754251)
chr6 (59-99)||(19231614-19231653)
[»] chr3 (23 HSPs)
chr3 (7-128)||(4207348-4207465)
chr3 (1-128)||(21660441-21660564)
chr3 (47-128)||(35202712-35202793)
chr3 (59-103)||(27303188-27303232)
chr3 (59-103)||(7767064-7767108)
chr3 (59-103)||(42009281-42009325)
chr3 (59-103)||(46904743-46904787)
chr3 (60-103)||(13401461-13401504)
chr3 (60-103)||(29387773-29387816)
chr3 (60-103)||(51939575-51939618)
chr3 (58-103)||(1649850-1649895)
chr3 (46-103)||(28132754-28132813)
chr3 (59-103)||(36538205-36538249)
chr3 (59-103)||(50677333-50677377)
chr3 (60-103)||(41707074-41707117)
chr3 (60-103)||(52655142-52655185)
chr3 (60-103)||(54430554-54430597)
chr3 (60-98)||(18408193-18408231)
chr3 (58-103)||(21596335-21596380)
chr3 (60-89)||(23164605-23164634)
chr3 (58-103)||(40152149-40152194)
chr3 (58-103)||(48627048-48627093)
chr3 (59-103)||(43905862-43905906)
[»] chr2 (19 HSPs)
chr2 (1-128)||(12072445-12072568)
chr2 (46-109)||(33280295-33280358)
chr2 (44-103)||(18916073-18916134)
chr2 (5-103)||(36059924-36060020)
chr2 (57-103)||(38985728-38985774)
chr2 (59-103)||(38599403-38599447)
chr2 (59-103)||(39081399-39081443)
chr2 (58-101)||(15457500-15457543)
chr2 (60-103)||(18172959-18173002)
chr2 (60-103)||(19367438-19367481)
chr2 (59-103)||(1418910-1418954)
chr2 (60-103)||(2063807-2063850)
chr2 (60-103)||(6530661-6530704)
chr2 (60-103)||(13020425-13020468)
chr2 (58-93)||(21747259-21747294)
chr2 (60-103)||(26151766-26151809)
chr2 (46-103)||(25222309-25222368)
chr2 (59-99)||(27302551-27302591)
chr2 (46-103)||(41096557-41096616)
[»] chr1 (20 HSPs)
chr1 (60-128)||(32810345-32810413)
chr1 (60-103)||(12884156-12884199)
chr1 (58-103)||(5560483-5560528)
chr1 (58-103)||(12971406-12971451)
chr1 (58-103)||(30004926-30004971)
chr1 (59-103)||(15441291-15441335)
chr1 (60-103)||(18127956-18127999)
chr1 (60-103)||(28885690-28885733)
chr1 (58-103)||(27703548-27703593)
chr1 (59-103)||(44836740-44836784)
chr1 (64-103)||(14084720-14084759)
chr1 (60-103)||(25930606-25930649)
chr1 (60-103)||(33124649-33124692)
chr1 (60-103)||(48722389-48722432)
chr1 (60-103)||(51110120-51110163)
chr1 (60-103)||(52055554-52055597)
chr1 (57-103)||(3907470-3907516)
chr1 (59-103)||(17674373-17674417)
chr1 (46-103)||(30899642-30899701)
chr1 (59-103)||(50371135-50371179)
[»] chr8 (16 HSPs)
chr8 (54-119)||(5971759-5971824)
chr8 (61-128)||(7790245-7790312)
chr8 (61-128)||(7810831-7810898)
chr8 (57-103)||(12531558-12531604)
chr8 (58-103)||(34523970-34524015)
chr8 (60-103)||(3471602-3471645)
chr8 (61-128)||(7773605-7773672)
chr8 (60-103)||(43968089-43968132)
chr8 (57-103)||(30915307-30915353)
chr8 (59-99)||(42076109-42076149)
chr8 (60-103)||(18420628-18420671)
chr8 (60-103)||(27074576-27074619)
chr8 (60-103)||(43926342-43926385)
chr8 (58-103)||(23567293-23567338)
chr8 (60-101)||(42951790-42951831)
chr8 (59-103)||(5869341-5869385)
[»] chr4 (18 HSPs)
chr4 (59-103)||(35653999-35654043)
chr4 (46-128)||(41305692-41305770)
chr4 (59-103)||(43154807-43154851)
chr4 (44-103)||(45172664-45172724)
chr4 (60-103)||(28463607-28463650)
chr4 (60-104)||(23256596-23256640)
chr4 (60-103)||(19661381-19661424)
chr4 (60-103)||(23426185-23426228)
chr4 (60-103)||(32130809-32130852)
chr4 (60-103)||(53011714-53011757)
chr4 (59-101)||(22423685-22423727)
chr4 (58-108)||(55134208-55134258)
chr4 (58-103)||(5545329-5545374)
chr4 (46-104)||(16072580-16072640)
chr4 (63-103)||(10575542-10575582)
chr4 (59-103)||(21791566-21791610)
chr4 (58-102)||(34982224-34982268)
chr4 (46-103)||(41038236-41038295)
[»] scaffold0482 (1 HSPs)
scaffold0482 (61-128)||(1601-1668)
[»] chr7 (16 HSPs)
chr7 (46-109)||(2445789-2445852)
chr7 (60-103)||(4099970-4100013)
chr7 (57-103)||(40001715-40001761)
chr7 (58-103)||(26282561-26282606)
chr7 (59-103)||(26633364-26633408)
chr7 (60-103)||(18015601-18015644)
chr7 (59-101)||(40738012-40738054)
chr7 (60-101)||(44894050-44894091)
chr7 (46-103)||(33910050-33910109)
chr7 (60-103)||(7636345-7636388)
chr7 (59-102)||(9479128-9479171)
chr7 (60-103)||(18895416-18895459)
chr7 (60-89)||(6380117-6380146)
chr7 (60-104)||(11672588-11672632)
chr7 (59-103)||(30739124-30739168)
chr7 (59-103)||(36438370-36438414)
[»] scaffold0126 (1 HSPs)
scaffold0126 (60-103)||(16712-16755)
[»] scaffold0181 (1 HSPs)
scaffold0181 (46-102)||(17152-17210)


Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 37029153 - 37028893
Alignment:
Q  1 cctttagactctagttctcctttttagacaaaaattcaattcttactatcaaatcatccaatttgtataatcacttaatcaatcaatttaaaaagctatt 100  Q
    ||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37029153 cctttagactctagttctcctttttagatcaaaattcaattcttgctatcaaatcatccaatttgtataatcacttaatcaatcaatttaaaaagctatt 37029054  T
Q  101 tcaaagaattacaataatcctttcttttgatgaggatgaggatgtgaaacataacaactagattttcttgaagctgcacatttcagaattcatgactaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37029053 tcaaagaattacaataatcctttcttttgatgaggatgaggatgtgaaacataacaactagattttcttgaagctgcacatttcagaattcatgactaac 37028954  T
Q  201 aaatgctattcttcattcacaaccaaccaaatttttgtgggccatatgtaaattttggtcc 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37028953 aaatgctattcttcattcacaaccaaccaaatttttgtgggccatatgtaaattttggtcc 37028893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 524965 - 524843
Alignment:
Q  1 cctttagactctagttctcctttttagacaaaaattcaattcttactatcaaatcatccaatttgtataatcacttaatcaatcaatttaaaaagctatt 100  Q
    ||||||||||||||||||||||||| || || |||||||| ||     ||||| |||| ||||| ||||||||||||||||||||||||||||| |||||    
T  524965 cctttagactctagttctcctttttggaaaagaattcaatgctc----tcaaaccatctaattt-tataatcacttaatcaatcaatttaaaaaactatt 524871  T
Q  101 tcaaagaattacaataatcctttctttt 128  Q
    | ||||||| ||||| ||||||||||||    
T  524870 ttaaagaatcacaattatcctttctttt 524843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 931380 - 931449
Alignment:
Q  58 ccaatttgtataatcacttaatcaatcaatttaaaaagctatttcaaagaattacaataatcctttctttt 128  Q
    |||||||||||||||||||||||| |||||||| ||||||| || ||||||| ||||||||| ||||||||    
T  931380 ccaatttgtataatcacttaatcagtcaatttagaaagcta-ttgaaagaatcacaataatcatttctttt 931449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 19099392 - 19099333
Alignment:
Q  46 ctatcaaatcatcc--aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||| |||||  |||||||||||||||||||||| |||||||||||||||||||||    
T  19099392 ctatcaaaccatccctaatttgtataatcacttaatcagtcaatttaaaaagctatttca 19099333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 13423866 - 13423909
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  13423866 aatttgtataatcacttaatcaatcaatttagaaagctatttca 13423909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 43511618 - 43511663
Alignment:
Q  58 ccaatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||    
T  43511618 ccaatttgtataatcacttaatcagtcaatttgaaaagctatttca 43511663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 138145 - 138189
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||    
T  138145 caatttgtataatcacttaatcagtcaatttgaaaagctatttca 138189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 29156192 - 29156235
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||| ||||||||||||| |||||||    
T  29156192 aatttgtataatcacttaatcagtcaatttaaaaagttatttca 29156235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 42291961 - 42291900
Alignment:
Q  44 tactatcaaatcatc--caatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||| |  ||||||||||||||||||||||| ||||||| |||| ||||||||    
T  42291961 tactatcaaatcaccaccaatttgtataatcacttaatcagtcaatttgaaaatctatttca 42291900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 7390460 - 7390419
Alignment:
Q  62 tttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||| ||||||||||||| |||||||    
T  7390460 tttgtataatcacttaatcagtcaatttaaaaagttatttca 7390419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 17514000 - 17513955
Alignment:
Q  58 ccaatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||||| ||||||| ||||| |||||||    
T  17514000 ccaatttgtataatcacttaatcagtcaatttgaaaagttatttca 17513955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 20975985 - 20976030
Alignment:
Q  58 ccaatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||| ||||||| ||||||| |||||||||||||    
T  20975985 ccaatttgtataatcatttaatcagtcaatttgaaaagctatttca 20976030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 13656212 - 13656255
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||| ||||||| ||||| |||||||    
T  13656212 aatttgtataatcacttaatcagtcaatttgaaaagttatttca 13656255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 33281677 - 33281719
Alignment:
Q  61 atttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||||| | ||||||||||||| |||||||    
T  33281677 atttgtataatcacttaattagtcaatttaaaaagttatttca 33281719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 40956312 - 40956358
Alignment:
Q  57 tccaatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||||||||||| | ||||| |||| ||||||||    
T  40956312 tccaatttgtataatcacttaatcatttaatttgaaaaactatttca 40956358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 92
Target Start/End: Original strand, 5829386 - 5829419
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaa 92  Q
    ||||||||||||||||||||||| ||||||||||    
T  5829386 caatttgtataatcacttaatcagtcaatttaaa 5829419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 10591337 - 10591292
Alignment:
Q  58 ccaatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||||| | ||||| ||||| |||||||    
T  10591337 ccaatttgtataatcacttaatcagttaatttgaaaagttatttca 10591292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 9e-36; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 31234858 - 31234971
Alignment:
Q  1 cctttagactctagttctcctttttagacaaaaattcaattcttactatcaaatcatccaatttgtataatcacttaatcaatcaatttaaaaagctatt 100  Q
    |||||||||||||||||| |||||||||||| |||||||| ||    |||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  31234858 cctttagactctagttctactttttagacaagaattcaatgct----atcaaaccatccaatttgtataatcacttaatcaatcaatttgaaaagctatt 31234953  T
Q  101 tcaaagaattacaataat 118  Q
    ||||||||| ||||||||    
T  31234954 tcaaagaatcacaataat 31234971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 31243995 - 31244107
Alignment:
Q  1 cctttagactctagttctcctttttagacaaaaattcaattcttactatcaaatcatccaatttgtataatcacttaatcaatcaatttaaaaagctatt 100  Q
    |||||||||||||||||| |||||||||||| |||||||| ||    |||||| |||||||||||||||||||||||||||||||| || ||||||||||    
T  31243995 cctttagactctagttctactttttagacaagaattcaatgct----atcaaaccatccaatttgtataatcacttaatcaatcaa-ttgaaaagctatt 31244089  T
Q  101 tcaaagaattacaataat 118  Q
    ||||||||| ||||||||    
T  31244090 tcaaagaatcacaataat 31244107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 1327589 - 1327653
Alignment:
Q  54 tcatccaatttgtataatcacttaatcaatcaatttaaaaagctatttcaaagaattacaataat 118  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| ||||||||    
T  1327589 tcatccaatttgtataatcacttaatcaatcaatttagaaaactatttcaaataatcacaataat 1327653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 32056050 - 32056129
Alignment:
Q  47 tatcaaatcatccaatttgtataatcacttaatcaatcaatttaaaaagctatttcaaagaattacaataatcctttctttt 128  Q
    ||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||| ||  ||| | ||||||||||||||||    
T  32056050 tatcaaaccatccaatt-gtataatcacttaatcactcaatttaaaaagctattt-aattaatcataataatcctttctttt 32056129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 3748631 - 3748587
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  3748631 caatttgtataatcacttaatcaatcaatttgaaaagctatttca 3748587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 57690 - 57733
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||| |||||||| ||||||||||||    
T  57690 aatttgtataatcacttaatcagtcaatttagaaagctatttca 57733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 628157 - 628114
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||| ||||||| |||||||||||||    
T  628157 aatttgtataatcacttaatcagtcaatttgaaaagctatttca 628114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 2618357 - 2618400
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||| ||||||| |||||||||||||    
T  2618357 aatttgtataatcacttaatcagtcaatttgaaaagctatttca 2618400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 12614778 - 12614735
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||| ||||||| |||||||||||||    
T  12614778 aatttgtataatcacttaatcagtcaatttgaaaagctatttca 12614735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 15035894 - 15035788
Alignment:
Q  5 tagactctagttctcctttttagacaaaaattcaattcttactatcaaatcatccaattt-gtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||| |||||||||||||| ||||| |||||||| ||    |||||| ||| |||||| ||||||||| |||| || ||||||| |||||||  ||||    
T  15035894 tagactttagttctcctttttggacaagaattcaatgct----atcaaaccattcaattttgtataatcatttaaccagtcaatttgaaaagctgattca 15035799  T
Q  104 aagaattacaa 114  Q
    |||||| ||||    
T  15035798 aagaatcacaa 15035788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 31861001 - 31861046
Alignment:
Q  58 ccaatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||| ||||||||| ||||||| |||||||||||||    
T  31861001 ccaatttgtataattacttaatcagtcaatttgaaaagctatttca 31861046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 1093104 - 1093031
Alignment:
Q  58 ccaatttgtataatcacttaatcaatcaatttaaaaagctatttc---aaagaattacaataatcctttctttt 128  Q
    |||||| ||||||| ||| ||||| ||||||||||||||||||||   ||||||| |||| |||| ||||||||    
T  1093104 ccaattggtataatgactaaatcagtcaatttaaaaagctatttcatgaaagaatcacaacaatcatttctttt 1093031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 21946109 - 21946152
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||| || |||| |||||||||||||    
T  21946109 aatttgtataatcacttaatcagtctatttgaaaagctatttca 21946152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 30915429 - 30915387
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaaaagctattt 101  Q
    ||||||||||||| ||||||||| ||||||| |||||||||||    
T  30915429 caatttgtataattacttaatcagtcaatttgaaaagctattt 30915387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 1690697 - 1690652
Alignment:
Q  58 ccaatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||||| |||||||||||| ||||  |||||||    
T  1690697 ccaatttgtataatcacttgatcaatcaatttgaaaatttatttca 1690652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 6360762 - 6360802
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatt 100  Q
    |||||||||||||||||||||| ||||||| ||||| ||||    
T  6360762 aatttgtataatcacttaatcagtcaatttgaaaagttatt 6360802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 6754192 - 6754251
Alignment:
Q  46 ctatcaaatcatcc--aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||| |||||  |||||||||| ||||||||||| |||||||  ||||||||||||    
T  6754192 ctatcaaaccatccctaatttgtatagtcacttaatcagtcaatttggaaagctatttca 6754251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 19231614 - 19231653
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaaaagctat 99  Q
    ||||||||||| ||||||||||||||||||| |||||||||    
T  19231614 caatttgtata-tcacttaatcaatcaatttgaaaagctat 19231653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 128
Target Start/End: Complemental strand, 4207465 - 4207348
Alignment:
Q  7 gactctagttctcctttttagacaaaaattcaattcttactatcaaatcatccaatttgtataatcacttaatcaatcaatttaaaaagctatttcaaag 106  Q
    ||||||||||||||||||| ||||| |||||||| ||    |||||| ||||||||||||||||||||||||||| |||||||  |||| ||||||||||    
T  4207465 gactctagttctcctttttggacaagaattcaatgct----atcaaaccatccaatttgtataatcacttaatcattcaatttggaaagatatttcaaag 4207370  T
Q  107 aattacaataatcctttctttt 128  Q
    ||| |||| |||||||||||||    
T  4207369 aatcacaacaatcctttctttt 4207348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 21660441 - 21660564
Alignment:
Q  1 cctttagactctagttctcctttttagacaaaaattcaattcttactatcaaatcatccaatttgtataatcacttaatcaatcaatttaaaaagctatt 100  Q
    |||||||||| || ||||||||||| ||||| |||| ||    | |||||||| |||| ||| |||||||||||||||||||||||||||||||  ||||    
T  21660441 cctttagactatatttctcctttttggacaagaatttaa----tgctatcaaaccatcaaatctgtataatcacttaatcaatcaatttaaaaaattatt 21660536  T
Q  101 tcaaagaattacaataatcctttctttt 128  Q
    ||||||||| ||||||||||||||||||    
T  21660537 tcaaagaatcacaataatcctttctttt 21660564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 35202793 - 35202712
Alignment:
Q  47 tatcaaatcatccaatttgtataatcacttaatcaatcaatttaaaaagctatttcaaagaattacaataatcctttctttt 128  Q
    ||||||| ||||||||||||||||| ||||||||| |||||||  ||||| |||||||| ||| |||| ||| |||||||||    
T  35202793 tatcaaaccatccaatttgtataattacttaatcagtcaattttgaaagcaatttcaaaaaatcacaacaatactttctttt 35202712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 27303188 - 27303232
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  27303188 caatttgtataatcacttaatcaatcaatttgaaaagctatttca 27303232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 7767064 - 7767108
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||    
T  7767064 caatttgtataatcacttaatcagtcaatttgaaaagctatttca 7767108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 42009325 - 42009281
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||    
T  42009325 caatttgtataatcacttaatcagtcaatttaaaaagttatttca 42009281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 46904743 - 46904787
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||    
T  46904743 caatttgtataatcacttaatcagtcaatttaaaaaactatttca 46904787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 13401461 - 13401504
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||| ||||||| |||||||||||||    
T  13401461 aatttgtataatcacttaatcagtcaatttgaaaagctatttca 13401504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 29387816 - 29387773
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||||||||||| ||||| |||||||    
T  29387816 aatttgtataatcacttaatcaatcaatttgaaaagttatttca 29387773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 51939618 - 51939575
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||| ||||||| |||||||||||||    
T  51939618 aatttgtataatcacttaatcagtcaatttgaaaagctatttca 51939575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 1649895 - 1649850
Alignment:
Q  58 ccaatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||||| ||||||| |||| ||||||||    
T  1649895 ccaatttgtataatcacttaatcattcaatttgaaaatctatttca 1649850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 28132813 - 28132754
Alignment:
Q  46 ctatcaaatcatcc--aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||| ||  |||||||||||||||||||||| |||||||  ||||||||||||    
T  28132813 ctatcaaatcacccttaatttgtataatcacttaatcagtcaatttggaaagctatttca 28132754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 36538249 - 36538205
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||||||||| ||||||| |||| ||||||||    
T  36538249 caatttgtataatcacttaatcagtcaatttgaaaaactatttca 36538205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 50677377 - 50677333
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||||||||| ||||||| |||| ||||||||    
T  50677377 caatttgtataatcacttaatcagtcaatttgaaaaactatttca 50677333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 41707117 - 41707074
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||| ||||||||||||||| ||||||| |||||||||||||    
T  41707117 aatttgcataatcacttaatcagtcaatttgaaaagctatttca 41707074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 52655185 - 52655142
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||| |||||||  ||||||||||||    
T  52655185 aatttgtataatcacttaatcagtcaatttggaaagctatttca 52655142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 54430554 - 54430597
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||| ||||||| ||||| |||||||    
T  54430554 aatttgtataatcacttaatcagtcaatttgaaaagttatttca 54430597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 18408193 - 18408231
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagcta 98  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  18408193 aatttgtataatcacttaatcagtcaatttgaaaagcta 18408231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 21596335 - 21596380
Alignment:
Q  58 ccaatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||||| || ||||  ||||||||||||    
T  21596335 ccaatttgtataatcacttaatcagtcgatttggaaagctatttca 21596380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 89
Target Start/End: Complemental strand, 23164634 - 23164605
Alignment:
Q  60 aatttgtataatcacttaatcaatcaattt 89  Q
    ||||||||||||||||||||||||||||||    
T  23164634 aatttgtataatcacttaatcaatcaattt 23164605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 40152194 - 40152149
Alignment:
Q  58 ccaatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||||  ||||||| |||| ||||||||    
T  40152194 ccaatttgtataatcacttaatcggtcaatttgaaaaactatttca 40152149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 48627093 - 48627048
Alignment:
Q  58 ccaatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||||| |||| ||||||| |||| ||||||||    
T  48627093 ccaatttgtataatcacttgatcagtcaatttgaaaatctatttca 48627048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 43905906 - 43905862
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||| ||||| ||||||| ||||| |||||||    
T  43905906 caatttgtataatcactcaatcagtcaatttgaaaagttatttca 43905862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 12072445 - 12072568
Alignment:
Q  1 cctttagactctagttctcctttttagacaaaaattcaattcttactatcaaatcatccaatttgtataatcacttaatcaatcaatttaaaaagctatt 100  Q
    |||||||||| |||||||||||||| ||||| ||||||||  |    |||||| ||| |||||| |||||||||||||||||||||||||||||| ||||    
T  12072445 cctttagactgtagttctcctttttggacaagaattcaatgtt----atcaaaccattcaatttatataatcacttaatcaatcaatttaaaaagttatt 12072540  T
Q  101 tcaaagaattacaataatcctttctttt 128  Q
    ||||||||| |||| ||| | |||||||    
T  12072541 tcaaagaatcacaacaattccttctttt 12072568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 33280358 - 33280295
Alignment:
Q  46 ctatcaaatcatccaatttgtataatcacttaatcaatcaatttaaaaagctatttcaaagaat 109  Q
    ||||||||||||||||||| |||||| |||| ||||||||||||||||| |||||| |||||||    
T  33280358 ctatcaaatcatccaatttctataattacttgatcaatcaatttaaaaaactattttaaagaat 33280295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 18916134 - 18916073
Alignment:
Q  44 tactatcaaatcatcc--aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||| |||||  |||||||||||||||||||||||||||||| |||||||||||||    
T  18916134 tactatcaaaccatccccaatttgtataatcacttaatcaatcaatttgaaaagctatttca 18916073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 36060020 - 36059924
Alignment:
Q  5 tagactctagttctcctttttagacaaaaattcaattcttactatcaaatcatc--caatttgtataatcacttaatcaatcaatttaaaaagctatttc 102  Q
    |||||||||||||| |||||||||||||||||  || ||    |||||| || |  ||||||||||||||||||||||| | ||||||||||||||||||    
T  36060020 tagactctagttctactttttagacaaaaatttgatgct----atcaaaccaccatcaatttgtataatcacttaatcagttaatttaaaaagctatttc 36059925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 38985774 - 38985728
Alignment:
Q  57 tccaatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||    
T  38985774 tccaatttgtataatcatttaatcaatcaatttgaaaagctatttca 38985728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 38599403 - 38599447
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||    
T  38599403 caatttgtataatcacttaatcaatcaatttgaaaaactatttca 38599447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 39081399 - 39081443
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||    
T  39081399 caatttgtataatcacttaatcagtcaatttgaaaagctatttca 39081443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 15457500 - 15457543
Alignment:
Q  58 ccaatttgtataatcacttaatcaatcaatttaaaaagctattt 101  Q
    |||||||||||||||||||||||| ||||||| |||||||||||    
T  15457500 ccaatttgtataatcacttaatcagtcaatttgaaaagctattt 15457543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 18173002 - 18172959
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||| ||||||| |||||||||||||    
T  18173002 aatttgtataatcacttaatcactcaatttgaaaagctatttca 18172959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 19367481 - 19367438
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||| ||||||| |||||||||||||    
T  19367481 aatttgtataatcacttaatcagtcaatttgaaaagctatttca 19367438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 1418910 - 1418954
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||||||||| |||||||  ||||||||||||    
T  1418910 caatttgtataatcacttaatcagtcaatttgtaaagctatttca 1418954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 2063807 - 2063850
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||| |||||||  ||||||||||||    
T  2063807 aatttgtataatcacttaatcagtcaatttggaaagctatttca 2063850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 6530661 - 6530704
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||| ||||||| ||||| |||||||    
T  6530661 aatttgtataatcacttaatcagtcaatttgaaaaggtatttca 6530704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 13020425 - 13020468
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||| |||||||  ||||||||||||    
T  13020425 aatttgtataatcacttaatcagtcaatttggaaagctatttca 13020468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 93
Target Start/End: Complemental strand, 21747294 - 21747259
Alignment:
Q  58 ccaatttgtataatcacttaatcaatcaatttaaaa 93  Q
    |||||||||||||||||||||||| |||||||||||    
T  21747294 ccaatttgtataatcacttaatcagtcaatttaaaa 21747259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 26151809 - 26151766
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||| |||||||  ||||||||||||    
T  26151809 aatttgtataatcacttaatcagtcaatttggaaagctatttca 26151766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 25222309 - 25222368
Alignment:
Q  46 ctatcaaatcatcc--aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||| |  |||||||||||||||||||| | |||||||| |||| |||||||    
T  25222309 ctatcaaatcattcctaatttgtataatcacttaattagtcaatttagaaagttatttca 25222368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 27302591 - 27302551
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaaaagctat 99  Q
    ||||||||||||||||||||||  ||||||| |||||||||    
T  27302591 caatttgtataatcacttaatcggtcaatttgaaaagctat 27302551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 41096616 - 41096557
Alignment:
Q  46 ctatcaaatcatcc--aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||| ||  |||||||||||||||||||||| |||||||  ||| ||||||||    
T  41096616 ctatcaaatcacccctaatttgtataatcacttaatcagtcaatttggaaaactatttca 41096557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 32810413 - 32810345
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttcaaagaattacaataatcctttctttt 128  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||    
T  32810413 aatttgaataatcacttaatcaatcaatttgaaaagctatttcaaagaatcctaataatcctttctttt 32810345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 12884199 - 12884156
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  12884199 aatttgtataatcacttaatcagtcaatttaaaaagctatttca 12884156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 5560483 - 5560528
Alignment:
Q  58 ccaatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||    
T  5560483 ccaatttgtataatcacttaatcagtcaatttaaaaagttatttca 5560528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 12971406 - 12971451
Alignment:
Q  58 ccaatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||    
T  12971406 ccaatttgtataatcacttaatcagtcaatttgaaaagctatttca 12971451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 30004971 - 30004926
Alignment:
Q  58 ccaatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||    
T  30004971 ccaatttgtataatcacttaatcaattaatttgaaaagctatttca 30004926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 15441291 - 15441335
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||    
T  15441291 caatttgtataatcacttaatcactcaatttataaagctatttca 15441335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 18127999 - 18127956
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||| ||||||| |||||||||||||    
T  18127999 aatttgtataatcacttaatcagtcaatttgaaaagctatttca 18127956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 28885733 - 28885690
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||||||||||||||||  ||||||||||||    
T  28885733 aatttgtataatcacttaatcaatcaattttgaaagctatttca 28885690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 27703593 - 27703548
Alignment:
Q  58 ccaatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||||| |||||||  ||||||||||||    
T  27703593 ccaatttgtataatcacttaatcagtcaatttggaaagctatttca 27703548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 44836784 - 44836740
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||||||||| ||||||| |||| ||||||||    
T  44836784 caatttgtataatcacttaatcagtcaatttgaaaaactatttca 44836740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 103
Target Start/End: Complemental strand, 14084759 - 14084720
Alignment:
Q  64 tgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||| |||||||| ||||||||||||    
T  14084759 tgtataatcacttaatcagtcaatttagaaagctatttca 14084720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 25930606 - 25930649
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||| |||| || |||||||||||||    
T  25930606 aatttgtataatcacttaatcagtcaacttgaaaagctatttca 25930649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 33124692 - 33124649
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||| | ||||||| |||||||||||||    
T  33124692 aatttgtataatcacttaataagtcaatttgaaaagctatttca 33124649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 48722432 - 48722389
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||| |||||||  ||||||||||||    
T  48722432 aatttgtataatcacttaatcagtcaatttggaaagctatttca 48722389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 51110163 - 51110120
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||| |||||||||||||||| |||||||| ||||||||||||    
T  51110163 aatttctataatcacttaatcagtcaatttagaaagctatttca 51110120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 52055554 - 52055597
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||| ||||||||||||||||||||||||  ||||||||||||    
T  52055554 aatttatataatcacttaatcaatcaatttggaaagctatttca 52055597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 3907470 - 3907516
Alignment:
Q  57 tccaatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||| ||||||||||||||| ||||  |||||||    
T  3907470 tccaatttgtataatcatttaatcaatcaatttgaaaaattatttca 3907516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 17674417 - 17674373
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||| ||||||||||||||| ||||||| |||| ||||||||    
T  17674417 caatttgaataatcacttaatcagtcaatttgaaaaactatttca 17674373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 30899642 - 30899701
Alignment:
Q  46 ctatcaaatcatcc--aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||| ||  |||||||||||||||||||| | |||||||  ||||||||||||    
T  30899642 ctatcaaatcacccctaatttgtataatcacttaattagtcaatttggaaagctatttca 30899701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 50371135 - 50371179
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||||||||| ||||||| |||| || |||||    
T  50371135 caatttgtataatcacttaatcagtcaatttgaaaaactgtttca 50371179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 5971824 - 5971759
Alignment:
Q  54 tcatccaatttgtataatcacttaatcaatcaatttaaaaagctatttcaaagaattacaataatc 119  Q
    ||||||||||| ||| |||||||||||| ||||||||||||||||||| ||||||| |||| ||||    
T  5971824 tcatccaatttctatcatcacttaatcagtcaatttaaaaagctattttaaagaatcacaacaatc 5971759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 7790245 - 7790312
Alignment:
Q  61 atttgtataatcacttaatcaatcaatttaaaaagctatttcaaagaattacaataatcctttctttt 128  Q
    ||||||||||||||||| | ||| ||||||||||  ||||||||||||| ||||||||||||| ||||    
T  7790245 atttgtataatcacttagtgaattaatttaaaaaattatttcaaagaatcacaataatcctttgtttt 7790312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 7810831 - 7810898
Alignment:
Q  61 atttgtataatcacttaatcaatcaatttaaaaagctatttcaaagaattacaataatcctttctttt 128  Q
    ||||||||||||||||| | ||| ||||||||||  ||||||||||||| ||||||||||||| ||||    
T  7810831 atttgtataatcacttagtgaattaatttaaaaaattatttcaaagaatcacaataatcctttgtttt 7810898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 12531558 - 12531604
Alignment:
Q  57 tccaatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||    
T  12531558 tccaatttgtataatcacttaatcagtcaatttaaaaatctatttca 12531604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 34524015 - 34523970
Alignment:
Q  58 ccaatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||    
T  34524015 ccaatttgtataatcacttaatcagtcaatttgaaaagctatttca 34523970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 3471602 - 3471645
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||| ||||||| |||||||||||||    
T  3471602 aatttgtataatcacttaatcagtcaatttgaaaagctatttca 3471645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 7773605 - 7773672
Alignment:
Q  61 atttgtataatcacttaatcaatcaatttaaaaagctatttcaaagaattacaataatcctttctttt 128  Q
    ||||||||||||||||| | ||| ||||||||||  ||||||||||||| |||||||| |||| ||||    
T  7773605 atttgtataatcacttagtgaattaatttaaaaaattatttcaaagaatcacaataattctttgtttt 7773672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 43968132 - 43968089
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||||||||||| ||||| |||||||    
T  43968132 aatttgtataatcacttaatcaatcaatttgaaaagttatttca 43968089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 30915353 - 30915307
Alignment:
Q  57 tccaatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||| |||||||||||||||||| ||||||| |||||||||||||    
T  30915353 tccaatatgtataatcacttaatcagtcaatttgaaaagctatttca 30915307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 42076109 - 42076149
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaaaagctat 99  Q
    ||||||||||||| ||||||||||||||||| |||||||||    
T  42076109 caatttgtataataacttaatcaatcaatttgaaaagctat 42076149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 18420671 - 18420628
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||| ||||||| ||||||| |||||    
T  18420671 aatttgtataatcacttaatcagtcaatttgaaaagctgtttca 18420628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 27074576 - 27074619
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||| |||||||||||  ||||||||    
T  27074576 aatttgtataatcacttaatcagtcaatttaaaagtctatttca 27074619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 43926385 - 43926342
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||| ||||||||| ||||||| |||||||||||||    
T  43926385 aatttgtataattacttaatcagtcaatttgaaaagctatttca 43926342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 23567338 - 23567293
Alignment:
Q  58 ccaatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||||| ||||||| |||  ||||||||    
T  23567338 ccaatttgtataatcacttaatcagtcaatttgaaatactatttca 23567293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 42951831 - 42951790
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctattt 101  Q
    |||||||||||||||||||||| ||||||| ||||| |||||    
T  42951831 aatttgtataatcacttaatcagtcaatttgaaaagttattt 42951790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 5869385 - 5869341
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||| || ||||||||||||| ||||||| |||||||||||||    
T  5869385 caatttttaaaatcacttaatcagtcaatttgaaaagctatttca 5869341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 35654043 - 35653999
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  35654043 caatttgtataatcacttaatcaatcaatttgaaaagctatttca 35653999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 128
Target Start/End: Original strand, 41305692 - 41305770
Alignment:
Q  46 ctatcaaatcatccaatttgtataatcacttaatcaatcaatttaaaaagctatttcaaagaattacaataatcctttctttt 128  Q
    |||||||||||||||||||||||||||    |||||||||||||| |||  ||||||||||||| ||| ||||  ||||||||    
T  41305692 ctatcaaatcatccaatttgtataatc----aatcaatcaatttagaaaattatttcaaagaatcacagtaatattttctttt 41305770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 43154851 - 43154807
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||    
T  43154851 caatttgtataatcacttaatcagtcaatttaaaaagttatttca 43154807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 45172724 - 45172664
Alignment:
Q  44 tactatcaaatcatcc-aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||| || || |||||||||||||||||||||| ||||||| |||||||||||||    
T  45172724 tactatcaaaccaccctaatttgtataatcacttaatcagtcaatttgaaaagctatttca 45172664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 28463650 - 28463607
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||||||||||||| || |||||||||||||    
T  28463650 aatttgtataatcacttaatcaatcaagttgaaaagctatttca 28463607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 23256596 - 23256640
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttcaa 104  Q
    ||||||||||| |||||||||| |||||||| |||||||||||||    
T  23256596 aatttgtataaccacttaatcagtcaatttagaaagctatttcaa 23256640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 19661381 - 19661424
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||| |||||||  ||||||||||||    
T  19661381 aatttgtataatcacttaatcagtcaatttggaaagctatttca 19661424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 23426228 - 23426185
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||| |||||||  ||||||||||||    
T  23426228 aatttgtataatcacttaatcagtcaatttggaaagctatttca 23426185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 32130852 - 32130809
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||| ||||||| |||| ||||||||    
T  32130852 aatttgtataatcacttaatcagtcaatttgaaaaactatttca 32130809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 53011714 - 53011757
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||| |||||||  ||||||||||||    
T  53011714 aatttgtataatcacttaatcagtcaatttggaaagctatttca 53011757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 101
Target Start/End: Original strand, 22423685 - 22423727
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaaaagctattt 101  Q
    |||||||||| |||||||||||||||||||| |||| ||||||    
T  22423685 caatttgtatgatcacttaatcaatcaatttgaaaaactattt 22423727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 55134208 - 55134258
Alignment:
Q  58 ccaatttgtataatcacttaatcaatcaatttaaaaagctatttcaaagaa 108  Q
    |||||| ||||||| ||||||||| ||||||| ||||||||||||| ||||    
T  55134208 ccaattggtataatgacttaatcagtcaatttgaaaagctatttcatagaa 55134258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 5545329 - 5545374
Alignment:
Q  58 ccaatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||||  |||||||  ||||||||||||    
T  5545329 ccaatttgtataatcacttaatcggtcaatttggaaagctatttca 5545374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 16072580 - 16072640
Alignment:
Q  46 ctatcaaatcatcc--aatttgtataatcacttaatcaatcaatttaaaaagctatttcaa 104  Q
    |||||||| |||||  |||||||||||||| ||||||| ||||||| |||| |||||||||    
T  16072580 ctatcaaaccatccctaatttgtataatcatttaatcagtcaatttgaaaaactatttcaa 16072640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 10575582 - 10575542
Alignment:
Q  63 ttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  10575582 ttgtataatcacttaatcagtcaatttagaaagttatttca 10575542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 21791610 - 21791566
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||| |||||||||||||||||| ||||||| ||||| |||||||    
T  21791610 caatgtgtataatcacttaatcagtcaatttgaaaagttatttca 21791566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 34982224 - 34982268
Alignment:
Q  58 ccaatttgtataatcacttaatcaatcaatttaaaaagctatttc 102  Q
    |||||||||||||||||||||||| ||||||  |||| |||||||    
T  34982224 ccaatttgtataatcacttaatcagtcaattggaaaaactatttc 34982268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 41038236 - 41038295
Alignment:
Q  46 ctatcaaatcatcc--aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||| ||  |||||||||||||||||||||| |||||||  ||| ||||||||    
T  41038236 ctatcaaatcacccctaatttgtataatcacttaatcagtcaatttggaaaactatttca 41038295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 128
Target Start/End: Complemental strand, 1668 - 1601
Alignment:
Q  61 atttgtataatcacttaatcaatcaatttaaaaagctatttcaaagaattacaataatcctttctttt 128  Q
    ||||||||||||||||| | ||| ||||||||||  ||||||||||||| ||||||||||||| ||||    
T  1668 atttgtataatcacttagtgaattaatttaaaaaattatttcaaagaatcacaataatcctttgtttt 1601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 2445852 - 2445789
Alignment:
Q  46 ctatcaaatcatccaatttgtataatcacttaatcaatcaatttaaaaagctatttcaaagaat 109  Q
    |||||||| ||| |||||||||||||||||||||| ||||| |||||| | |||||||||||||    
T  2445852 ctatcaaaccattcaatttgtataatcacttaatctatcaaattaaaaggttatttcaaagaat 2445789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 4099970 - 4100013
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  4099970 aatttgtataatcacttaatcaatcaatttgaaaagctatttca 4100013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 40001761 - 40001715
Alignment:
Q  57 tccaatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||    
T  40001761 tccaatttgtataatcacttaatcagtcaatttgaaaagctatttca 40001715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 26282606 - 26282561
Alignment:
Q  58 ccaatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||    
T  26282606 ccaatttgtataatcacttaatcagtcaatttgaaaagctatttca 26282561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 26633364 - 26633408
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||    
T  26633364 caatttgtataatcacttaatcagtcaatttgaaaagctatttca 26633408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 18015644 - 18015601
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||||||||||||||||  ||||||||||||    
T  18015644 aatttgtataatcacttaatcaatcaatttggaaagctatttca 18015601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 40738054 - 40738012
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaaaagctattt 101  Q
    ||||||||||||| ||||||||| |||||||||||||||||||    
T  40738054 caatttgtataattacttaatcagtcaatttaaaaagctattt 40738012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 44894091 - 44894050
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctattt 101  Q
    ||||||||||||||||||||||||||||||  ||||||||||    
T  44894091 aatttgtataatcacttaatcaatcaatttggaaagctattt 44894050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 33910050 - 33910109
Alignment:
Q  46 ctatcaaatcatcc--aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||| ||  ||||||||||||| |||||||| ||||||| |||||||||||||    
T  33910050 ctatcaaatcacccctaatttgtataatcgcttaatcagtcaatttgaaaagctatttca 33910109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 7636388 - 7636345
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||| ||||||||| ||||||| |||||||||||||    
T  7636388 aatttgtataattacttaatcagtcaatttgaaaagctatttca 7636345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 9479128 - 9479171
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaaaagctatttc 102  Q
    ||||||||||||| ||||||||| |||||||||||| |||||||    
T  9479128 caatttgtataattacttaatcagtcaatttaaaaaactatttc 9479171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 18895459 - 18895416
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||| ||||||| ||||||||||||| |||||||    
T  18895459 aatttgtataatcaattaatcagtcaatttaaaaagttatttca 18895416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 89
Target Start/End: Complemental strand, 6380146 - 6380117
Alignment:
Q  60 aatttgtataatcacttaatcaatcaattt 89  Q
    ||||||||||||||||||||||||||||||    
T  6380146 aatttgtataatcacttaatcaatcaattt 6380117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 11672588 - 11672632
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttcaa 104  Q
    |||||||||||||||||||||| |||||||  |||| ||||||||    
T  11672588 aatttgtataatcacttaatcagtcaatttggaaagttatttcaa 11672632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 30739124 - 30739168
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||| |||||||||||||||| ||||||| ||||| |||||||    
T  30739124 caatttttataatcacttaatcagtcaatttgaaaagttatttca 30739168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 36438414 - 36438370
Alignment:
Q  59 caatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    ||||||||||||||||||||||| ||||||| |||| | ||||||    
T  36438414 caatttgtataatcacttaatcagtcaatttgaaaaaccatttca 36438370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 16712 - 16755
Alignment:
Q  60 aatttgtataatcacttaatcaatcaatttaaaaagctatttca 103  Q
    |||||||||||||||||||||| ||||||| |||||||||||||    
T  16712 aatttgtataatcacttaatcagtcaatttgaaaagctatttca 16755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 17210 - 17152
Alignment:
Q  46 ctatcaaatcatcc--aatttgtataatcacttaatcaatcaatttaaaaagctatttc 102  Q
    ||||||||||| ||  |||||||||||||||||||||| |||||||  |||||||||||    
T  17210 ctatcaaatcacccctaatttgtataatcacttaatcagtcaatttggaaagctatttc 17152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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