View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13656_low_1 (Length: 631)

Name: NF13656_low_1
Description: NF13656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13656_low_1
NF13656_low_1
[»] chr5 (6 HSPs)
chr5 (31-354)||(30413187-30413510)
chr5 (352-615)||(30412878-30413145)
chr5 (31-209)||(26789272-26789450)
chr5 (35-185)||(21363852-21364002)
chr5 (84-181)||(24055843-24055940)
chr5 (72-128)||(25188327-25188383)
[»] chr4 (2 HSPs)
chr4 (32-354)||(13325464-13325785)
chr4 (352-614)||(13325156-13325422)
[»] scaffold0001 (1 HSPs)
scaffold0001 (31-354)||(54462-54785)
[»] scaffold0566 (1 HSPs)
scaffold0566 (32-354)||(4052-4373)
[»] scaffold0195 (4 HSPs)
scaffold0195 (31-328)||(10299-10596)
scaffold0195 (31-328)||(15688-15985)
scaffold0195 (368-451)||(10684-10767)
scaffold0195 (368-451)||(16073-16156)
[»] chr7 (1 HSPs)
chr7 (31-232)||(12158166-12158367)
[»] scaffold0013 (1 HSPs)
scaffold0013 (48-253)||(98142-98347)
[»] scaffold1637 (2 HSPs)
scaffold1637 (178-354)||(827-1003)
scaffold1637 (31-118)||(1003-1090)
[»] chr6 (2 HSPs)
chr6 (33-181)||(15557264-15557412)
chr6 (61-130)||(21805524-21805593)
[»] scaffold0665 (1 HSPs)
scaffold0665 (55-181)||(5600-5726)
[»] scaffold0356 (1 HSPs)
scaffold0356 (55-181)||(8222-8348)
[»] chr8 (4 HSPs)
chr8 (55-253)||(29615318-29615516)
chr8 (60-185)||(19975912-19976037)
chr8 (60-185)||(21016796-21016921)
chr8 (35-185)||(22716057-22716207)
[»] chr3 (1 HSPs)
chr3 (35-185)||(12481055-12481205)
[»] chr1 (1 HSPs)
chr1 (35-185)||(12451590-12451740)
[»] scaffold0056 (1 HSPs)
scaffold0056 (61-169)||(77335-77443)
[»] chr2 (2 HSPs)
chr2 (87-185)||(32136422-32136520)
chr2 (69-130)||(27505482-27505543)


Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 31 - 354
Target Start/End: Complemental strand, 30413510 - 30413187
Alignment:
Q  31 cattatcaatgagtaacggagtttccaccgcccctgcgatctcatataaggttctctccatccagtactcctgtggtaattcccataaccgaatccaaac 130  Q
    |||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30413510 cattatcaatgagtaacgaagttcccaccgcccctgtgatctcatataaggttctctccatccagtactcctgtggtaattcccataaccgaatccaaac 30413411  T
Q  131 ctgagtgtgagtttgtcgttgcgtgtgcatgttgaagtcttttgtccattcaaatcatcagagtaagcctggcttcaagctaatactaccggctacccaa 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||    
T  30413410 ctgagtgtgagtttgtcgttgcgtgtgcatgttgaagtcttttgtccattcaaataatccgagtaagcctggcttcaagctaatactaccgtctacccaa 30413311  T
Q  231 acggttcacatgtcctcttgtgaattaaagaaaatttcataataaccccgtccaagggacggcaaatgccatggctccttcactttccacaacttctgta 330  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||  |||||||||||||||||||||||||||||||    
T  30413310 acggttcgcatgtcctcttgtgaattaaagaaaatttcataataaccctgtccaagggacgtcaaatttcatggctccttcactttccacaacttctgta 30413211  T
Q  331 atttttcagcaagatctttggagg 354  Q
    |||| |||||||||||||||||||    
T  30413210 atttgtcagcaagatctttggagg 30413187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 352 - 615
Target Start/End: Complemental strand, 30413145 - 30412878
Alignment:
Q  352 aggttggttttgcaagca----gttcacgaaaatagacatcatccgtgattttgacagataatatttcaccacgaatggaaggcaccaggagagggtcag 447  Q
    ||||||||||||||||||    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30413145 aggttggttttgcaagcatctagttcacaaaaatagacatcatccgtgattttgacagataatatttcaccacgaatggaaggcaccgggagagggtcag 30413046  T
Q  448 acagtatcgtattaccacgtaggacctgatcaaacgagggcttaggtgcaactgatgtcacctgaaccataggaacgacaatagacttaacaggtgtggg 547  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||    
T  30413045 acagtatcgtattaccacgtaggacctgatcaaacgagggcttaggtgcaactgatgtcatctgaaccgtaggagcgacaatagacttaacaggtgtggg 30412946  T
Q  548 tgcgagcactgttgaaagctgtcgtgattccttggttccaaagttgagggttggaggcgctagctctg 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30412945 tgcgagcactgttgaaagctgtcgtgattccttggttccaaagttgagggttggaggcgctagctctg 30412878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 31 - 209
Target Start/End: Original strand, 26789272 - 26789450
Alignment:
Q  31 cattatcaatgagtaacggagtttccaccgcccctgcgatctcatataaggttctctccatccagtactcctgtggtaattcccataaccgaatccaaac 130  Q
    ||||||||||||||||||||||| ||| ||| || || || | ||| ||||| |||||||||||| ||||||  ||||| |||||||| |||||||||||    
T  26789272 cattatcaatgagtaacggagttcccatcgcaccggcaatttaatacaaggtcctctccatccagcactcctacggtaactcccataaacgaatccaaac 26789371  T
Q  131 ctgagtgtgagtttgtcgttgcgtgtgcatgttgaagtcttttgtccattcaaatcatcagagtaagcctggcttcaag 209  Q
    ||||||||| ||||||| |||||||||||| ||||| || ||||||||||||||  |||  ||||| ||||||||||||    
T  26789372 ctgagtgtgtgtttgtctttgcgtgtgcatattgaactcctttgtccattcaaacaatctcagtaaccctggcttcaag 26789450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 185
Target Start/End: Complemental strand, 21364002 - 21363852
Alignment:
Q  35 atcaatgagtaacggagtttccaccgcccctgcgatctcatataaggttctctccatccagtactcctgtggtaattcccataaccgaatccaaacctga 134  Q
    ||||||||| || |||||  | ||||||||||| |||||  |||| ||  |||||||||| || || ||||| ||||||||||| || |||||||||| |    
T  21364002 atcaatgagcaatggagtaccaaccgcccctgctatctccaataaagtcttctccatccaatattcttgtggcaattcccataaacggatccaaacctaa 21363903  T
Q  135 gtgtgagtttgtcgttgcgtgtgcatgttgaagtcttttgtccattcaaat 185  Q
    |  || ||||| || ||||||||||| || ||||| || | ||||||||||    
T  21363902 gcatgtgtttgacgatgcgtgtgcatattaaagtccttcgaccattcaaat 21363852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 181
Target Start/End: Complemental strand, 24055940 - 24055843
Alignment:
Q  84 ctctccatccagtactcctgtggtaattcccataaccgaatccaaacctgagtgtgagtttgtcgttgcgtgtgcatgttgaagtcttttgtccattc 181  Q
    ||||||||||| || |||||||| |  ||||| ||||||||||| || || || || |||||||| || ||||||| ||||||||  || ||||||||    
T  24055940 ctctccatccaatattcctgtgggagctcccacaaccgaatccatacttgtgtatgcgtttgtcgctgagtgtgcaggttgaagttcttggtccattc 24055843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 25188327 - 25188383
Alignment:
Q  72 tcatataaggttctctccatccagtactcctgtggtaattcccataaccgaatccaa 128  Q
    ||||| || |||||||||| ||| || |||||||||||||||||||  |||||||||    
T  25188327 tcatacaatgttctctccacccaatattcctgtggtaattcccatagtcgaatccaa 25188383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 175; Significance: 7e-94; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 32 - 354
Target Start/End: Complemental strand, 13325785 - 13325464
Alignment:
Q  32 attatcaatgagtaacggagtttccaccgcccctgcgatctcatataaggttctctccatccagtactcctgtggtaattcccataaccgaatccaaacc 131  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||  ||||||||||||||||| || | || ||||||||| ||||||||||     
T  13325785 attatcaatgagtaacagagtttccaccgcccctgctatctcatataaggtcttctccatccagtactcccgtagcaactcccataactgaatccaaac- 13325687  T
Q  132 tgagtgtgagtttgtcgttgcgtgtgcatgttgaagtcttttgtccattcaaatcatcagagtaagcctggcttcaagctaatactaccggctacccaaa 231  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||  |||  |||||||||| ||||||||||||| |||||||| | ||||    
T  13325686 tgagtgtgggtttgccgttgcgtgtgcatgttgaagtcttttgtccattcaaaaaatcgcagtaagcctgacttcaagctaatagtaccggctgctcaaa 13325587  T
Q  232 cggttcacatgtcctcttgtgaattaaagaaaatttcataataaccccgtccaagggacggcaaatgccatggctccttcactttccacaacttctgtaa 331  Q
    | |||  ||||||||||| |||||||||| ||| ||||||| ||||| |||||||||||| ||||||||||||  ||||||||||||||| ||| |||||    
T  13325586 ctgtttgcatgtcctcttctgaattaaagtaaaattcataaaaacccagtccaagggacgtcaaatgccatggtcccttcactttccacagcttatgtaa 13325487  T
Q  332 tttttcagcaagatctttggagg 354  Q
    |||  || |||||||||||||||    
T  13325486 tttggcaacaagatctttggagg 13325464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 352 - 614
Target Start/End: Complemental strand, 13325422 - 13325156
Alignment:
Q  352 aggttggttttgcaagca----gttcacgaaaatagacatcatccgtgattttgacagataatatttcaccacgaatggaaggcaccaggagagggtcag 447  Q
    ||||||||||||||||||    || |||||| ||| ||||||||||| ||||| || ||||| || |||||||||||| |||||||| ||||||||||||    
T  13325422 aggttggttttgcaagcatccagtccacgaacatatacatcatccgtaattttaaccgataacatatcaccacgaatgtaaggcaccgggagagggtcag 13325323  T
Q  448 acagtatcgtattaccacgtaggacctgatcaaacgagggcttaggtgcaactgatgtcacctgaaccataggaacgacaatagacttaacaggtgtggg 547  Q
    | |||| ||||||||| || ||| ||||| |||| ||||||||||||||| | |||| || ||||||  ||||||||||  ||||| |||| |||| |||    
T  13325322 atagtaccgtattacctcgaagggcctgagcaaaagagggcttaggtgcagcagatgacatctgaactgtaggaacgacggtagacataaccggtggggg 13325223  T
Q  548 tgcgagcactgttgaaagctgtcgtgattccttggttccaaagttgagggttggaggcgctagctct 614  Q
     | ||  |||||||||||||||||||||||||||   ||||||||||||| ||||| ||||||||||    
T  13325222 agtgactactgttgaaagctgtcgtgattccttgacgccaaagttgagggctggagacgctagctct 13325156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 128; Significance: 7e-66; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 31 - 354
Target Start/End: Complemental strand, 54785 - 54462
Alignment:
Q  31 cattatcaatgagtaacggagtttccaccgcccctgcgatctcatataaggttctctccatccagtactcctgtggtaattcccataaccgaatccaaac 130  Q
    ||||||| |||||||||| |||| |||||||||| || ||||| || ||||| ||||||||||| || ||  ||||||||| |||||| |||| ||||||    
T  54785 cattatcgatgagtaacgaagttcccaccgccccggcaatctcgtacaaggtcctctccatccaatattctcgtggtaatttccataatcgaacccaaac 54686  T
Q  131 ctgagtgtgagtttgtcgttgcgtgtgcatgttgaagtcttttgtccattcaaatcatcagagtaagcctggcttcaagctaatactaccggctacccaa 230  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||  ||||| ||||||||||| || ||  |||||||| |||||    
T  54685 ctgagtgtgagtttgtcgatgcgtgtgcatgttgaagtcttttttccattcaaataatctaagtaaccctggcttcaaactgatcgtaccggctgcccaa 54586  T
Q  231 acggttcacatgtcctcttgtgaattaaagaaaatttcataataaccccgtccaagggacggcaaatgccatggctccttcactttccacaacttctgta 330  Q
    ||||||  ||| ||||||||||| |||||||||| ||||||| | || |  |||||||| |  | |||||||||| | |||||||||||||| || ||||    
T  54585 acggttttcatatcctcttgtgagttaaagaaaaattcataaaaccctctcccaagggatgttagatgccatggccctttcactttccacaatttatgta 54486  T
Q  331 atttttcagcaagatctttggagg 354  Q
    || |  |||| ||||| |||||||    
T  54485 atgtggcagcgagatccttggagg 54462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0566 (Bit Score: 123; Significance: 7e-63; HSPs: 1)
Name: scaffold0566
Description:

Target: scaffold0566; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 32 - 354
Target Start/End: Original strand, 4052 - 4373
Alignment:
Q  32 attatcaatgagtaacggagtttccaccgcccctgcgatctcatataaggttctctccatccagtactcctgtggtaattcccataaccgaatccaaacc 131  Q
    |||||| |||||||| |||||| |||||||||| || |||||||| ||||| ||||||||||| || || ||||||||||||||||| |||| |||||||    
T  4052 attatcgatgagtaatggagttcccaccgccccggcaatctcatacaaggtcctctccatccaatattcttgtggtaattcccataatcgaacccaaacc 4151  T
Q  132 tgagtgtgagtttgtcgttgcgtgtgcatgttgaagtcttttgtccattcaaatcatcagagtaagcctggcttcaagctaatactaccggctacccaaa 231  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||  ||||| | ||||||||| || |   |||||||| ||||||    
T  4152 tgagtgtgagtttgtcgatgcgtgtgcatgttgaagtctttt-tccattcaaataatctaagtaaccttggcttcaaactgaccgtaccggctgcccaaa 4250  T
Q  232 cggttcacatgtcctcttgtgaattaaagaaaatttcataataaccccgtccaagggacggcaaatgccatggctccttcactttccacaacttctgtaa 331  Q
    |||||  ||| || |||||||| |||||||||| ||||||| | || |  |||||||| |  | |||||||||| | |||||||||| ||| ||||||||    
T  4251 cggttttcatatcgtcttgtgagttaaagaaaaattcataaaaccctctcccaagggatgttagatgccatggccctttcactttcctcaatttctgtaa 4350  T
Q  332 tttttcagcaagatctttggagg 354  Q
    | |  |||| ||||| |||||||    
T  4351 tgtggcagcgagatccttggagg 4373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0195 (Bit Score: 98; Significance: 6e-48; HSPs: 4)
Name: scaffold0195
Description:

Target: scaffold0195; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 31 - 328
Target Start/End: Original strand, 10299 - 10596
Alignment:
Q  31 cattatcaatgagtaacggagtttccaccgcccctgcgatctcatataaggttctctccatccagtactcctgtggtaattcccataaccgaatccaaac 130  Q
    ||||||||||||||||||||||  | |||||||| ||||||||||| || || ||||||||||| || || ||||||||||||||||| |||| ||||||    
T  10299 cattatcaatgagtaacggagtaccaaccgccccggcgatctcatacaatgtcctctccatccaatattcttgtggtaattcccataaacgaacccaaac 10398  T
Q  131 ctgagtgtgagtttgtcgttgcgtgtgcatgttgaagtcttttgtccattcaaatcatcagagtaagcctggcttcaagctaatactaccggctacccaa 230  Q
    ||||||||||||||| ||||||||||||||||| ||||| ||  ||||||||||| |||  || |  ||||| |||||  ||| | |||||||| |||||    
T  10399 ctgagtgtgagtttgccgttgcgtgtgcatgttaaagtccttcttccattcaaataatcttagcagccctggtttcaaattaacagtaccggctgcccaa 10498  T
Q  231 acggttcacatgtcctcttgtgaattaaagaaaatttcataataaccccgtccaagggacggcaaatgccatggctccttcactttccacaacttctg 328  Q
    || |||  ||| || ||| | |  |||||||| | ||||||| | || ||||||||||| |  |||||||||||| | |||||| ||||||| |||||    
T  10499 acagttttcatatcatctagcgtgttaaagaagaattcataaaaccctcgtccaagggatgttaaatgccatggccctttcactgtccacaatttctg 10596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0195; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 31 - 328
Target Start/End: Original strand, 15688 - 15985
Alignment:
Q  31 cattatcaatgagtaacggagtttccaccgcccctgcgatctcatataaggttctctccatccagtactcctgtggtaattcccataaccgaatccaaac 130  Q
    ||||||||||||||||||||||  | |||||||| ||||||||||| || || ||||||||||| || || ||||||||||||||||| |||| ||||||    
T  15688 cattatcaatgagtaacggagtaccaaccgccccggcgatctcatacaatgtcctctccatccaatattcttgtggtaattcccataaacgaacccaaac 15787  T
Q  131 ctgagtgtgagtttgtcgttgcgtgtgcatgttgaagtcttttgtccattcaaatcatcagagtaagcctggcttcaagctaatactaccggctacccaa 230  Q
    ||||||||||||||| ||||||||||||||||| ||||| ||  ||||||||||| |||  || |  ||||| |||||  ||| | |||||||| |||||    
T  15788 ctgagtgtgagtttgccgttgcgtgtgcatgttaaagtccttcttccattcaaataatcttagcagccctggtttcaaattaacagtaccggctgcccaa 15887  T
Q  231 acggttcacatgtcctcttgtgaattaaagaaaatttcataataaccccgtccaagggacggcaaatgccatggctccttcactttccacaacttctg 328  Q
    || |||  ||| || ||| | |  |||||||| | ||||||| | || ||||||||||| |  |||||||||||| | |||||| ||||||| |||||    
T  15888 acagttttcatatcatctagcgtgttaaagaagaattcataaaaccctcgtccaagggatgttaaatgccatggccctttcactgtccacaatttctg 15985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0195; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 368 - 451
Target Start/End: Original strand, 10684 - 10767
Alignment:
Q  368 cagttcacgaaaatagacatcatccgtgattttgacagataatatttcaccacgaatggaaggcaccaggagagggtcagacag 451  Q
    |||| |||||| ||| |||||||| |||||||| |||||||  || |||||||||||||| |||||| |||| ||||| |||||    
T  10684 cagtccacgaacatatacatcatcagtgattttaacagatagcatatcaccacgaatggacggcaccgggagtgggtccgacag 10767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0195; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 368 - 451
Target Start/End: Original strand, 16073 - 16156
Alignment:
Q  368 cagttcacgaaaatagacatcatccgtgattttgacagataatatttcaccacgaatggaaggcaccaggagagggtcagacag 451  Q
    |||| |||||| ||| |||||||| |||||||| |||||||  || |||||||||||||| |||||| |||| ||||| |||||    
T  16073 cagtccacgaacatatacatcatcagtgattttaacagatagcatatcaccacgaatggacggcaccgggagtgggtccgacag 16156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 4e-43; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 31 - 232
Target Start/End: Complemental strand, 12158367 - 12158166
Alignment:
Q  31 cattatcaatgagtaacggagtttccaccgcccctgcgatctcatataaggttctctccatccagtactcctgtggtaattcccataaccgaatccaaac 130  Q
    ||||||||||||||||||||||  | |||||||| || |||||||| || || ||||||||||| || || ||||||||||||||||| |||| ||||||    
T  12158367 cattatcaatgagtaacggagtaccaaccgccccagcaatctcatacaatgtcctctccatccaatattcttgtggtaattcccataaacgaacccaaac 12158268  T
Q  131 ctgagtgtgagtttgtcgttgcgtgtgcatgttgaagtcttttgtccattcaaatcatcagagtaagcctggcttcaagctaatactaccggctacccaa 230  Q
    ||||||||||||||||||||||||||||||||| ||||| ||  ||||||||||| |||  || | |||||| ||||| ||||   |||||||| |||||    
T  12158267 ctgagtgtgagtttgtcgttgcgtgtgcatgttaaagtccttcttccattcaaataatcgtagcaggcctggtttcaaactaacggtaccggctgcccaa 12158168  T
Q  231 ac 232  Q
    ||    
T  12158167 ac 12158166  T

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Target: scaffold0013 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 48 - 253
Target Start/End: Complemental strand, 98347 - 98142
Alignment:
Q  48 ggagtttccaccgcccctgcgatctcatataaggttctctccatccagtactcctgtggtaattcccataaccgaatccaaacctgagtgtgagtttgtc 147  Q
    |||||| ||||||||||||| || ||||||||||||||||||||||| || || || ||||||||||||| ||| |||| |||||| ||||||||||| |    
T  98347 ggagttcccaccgcccctgcaatttcatataaggttctctccatccaatattcttgcggtaattcccatagccggatcctaacctgggtgtgagtttgcc 98248  T
Q  148 gttgcgtgtgcatgttgaagtcttttgtccattcaaatcatcagagtaagcctggcttcaagctaatactaccggctacccaaacggttcacatgtcctc 247  Q
    | || ||||| ||| | ||||| ||  ||||||||||   ||  || || || ||||||||||||| | |||||||| |||||| ||| ||||| || ||    
T  98247 gatgagtgtgaatgctaaagtccttattccattcaaacagtctaagcaatcccggcttcaagctaacagtaccggctgcccaaatggtgcacatatcttc 98148  T
Q  248 ttgtga 253  Q
    ||||||    
T  98147 ttgtga 98142  T

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Target: scaffold1637 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: scaffold1637
Description:

Target: scaffold1637; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 178 - 354
Target Start/End: Complemental strand, 1003 - 827
Alignment:
Q  178 attcaaatcatcagagtaagcctggcttcaagctaatactaccggctacccaaacggttcacatgtcctcttgtgaattaaagaaaatttcataataacc 277  Q
    |||||||| |||  ||||| ||||||||||| || |   |||||||| || ||||||||  ||| ||||||||||| |||||||||| ||||||| | ||    
T  1003 attcaaataatctaagtaaccctggcttcaaactgaccgtaccggctgcctaaacggttttcatatcctcttgtgagttaaagaaaaattcataaaaccc 904  T
Q  278 ccgtccaagggacggcaaatgccatggctccttcactttccacaacttctgtaatttttcagcaagatctttggagg 354  Q
     || |||||||| |  | |||||||| | | ||||||||||||||||||||||||||  |||| ||||| |||||||    
T  903 tcgcccaagggatgttagatgccatgtccctttcactttccacaacttctgtaatttggcagcgagatccttggagg 827  T

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Target: scaffold1637; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 118
Target Start/End: Complemental strand, 1090 - 1003
Alignment:
Q  31 cattatcaatgagtaacggagtttccaccgcccctgcgatctcatataaggttctctccatccagtactcctgtggtaattcccataa 118  Q
    ||||||| |||||||||||| || ||||| |||| || ||||||||  |||| ||||||||||| || || |||||||||||||||||    
T  1090 cattatcgatgagtaacggaattcccaccaccccggcaatctcatactaggtcctctccatccaatattcttgtggtaattcccataa 1003  T

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Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 33 - 181
Target Start/End: Complemental strand, 15557412 - 15557264
Alignment:
Q  33 ttatcaatgagtaacggagtttccaccgcccctgcgatctcatataaggttctctccatccagtactcctgtggtaattcccataaccgaatccaaacct 132  Q
    |||||||| |||||||| || || ||||| || || || |||||||  || ||||||||||| ||||| ||||| | |||||| ||||||||||| ||||    
T  15557412 ttatcaatcagtaacggtgtctcaaccgcgcccgcaatttcatatagagtcctctccatccaatactcttgtgggagttcccacaaccgaatccatacct 15557313  T
Q  133 gagtgtgagtttgtcgttgcgtgtgcatgttgaagtcttttgtccattc 181  Q
    | ||||||||||||  ||| ||||| | ||||||||| || ||||||||    
T  15557312 gcgtgtgagtttgtatttgagtgtgtaggttgaagtccttggtccattc 15557264  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 61 - 130
Target Start/End: Complemental strand, 21805593 - 21805524
Alignment:
Q  61 cccctgcgatctcatataaggttctctccatccagtactcctgtggtaattcccataaccgaatccaaac 130  Q
    ||||||| |||||||| || ||||| |||||||||||||| || || ||||||||||| |||||||||||    
T  21805593 cccctgcaatctcatacaaagttctttccatccagtactcttgcggcaattcccataaacgaatccaaac 21805524  T

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Target: scaffold0665 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 55 - 181
Target Start/End: Complemental strand, 5726 - 5600
Alignment:
Q  55 ccaccgcccctgcgatctcatataaggttctctccatccagtactcctgtggtaattcccataaccgaatccaaacctgagtgtgagtttgtcgttgcgt 154  Q
    ||||||| || || || |||||||  || ||||||||||||||||| ||||| | |||||| ||||||||||| || || ||||||||||||| ||| ||    
T  5726 ccaccgcacccgcaatttcatatagagtcctctccatccagtactcttgtggaagttcccacaaccgaatccagacttgtgtgtgagtttgtctttgagt 5627  T
Q  155 gtgcatgttgaagtcttttgtccattc 181  Q
    |||||  || |||||||| ||||||||    
T  5626 gtgcagattaaagtctttggtccattc 5600  T

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Target: scaffold0356 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 55 - 181
Target Start/End: Complemental strand, 8348 - 8222
Alignment:
Q  55 ccaccgcccctgcgatctcatataaggttctctccatccagtactcctgtggtaattcccataaccgaatccaaacctgagtgtgagtttgtcgttgcgt 154  Q
    ||||||| || || || |||||||  || ||||||||||||||||| ||||| | |||||| ||||||||||| || || ||||||||||||| ||| ||    
T  8348 ccaccgcacccgcaatttcatatagagtcctctccatccagtactcttgtggaagttcccacaaccgaatccagacttgtgtgtgagtttgtctttgagt 8249  T
Q  155 gtgcatgttgaagtcttttgtccattc 181  Q
    |||||  || |||||||| ||||||||    
T  8248 gtgcagattaaagtctttggtccattc 8222  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 55 - 253
Target Start/End: Original strand, 29615318 - 29615516
Alignment:
Q  55 ccaccgcccctgcgatctcatataaggttctctccatccagtactcctgtggtaattcccataaccgaatccaaacctgagtgtgagtttgtcgttgcgt 154  Q
    |||| ||||| || |||||| | ||||| ||||||||||| || ||  ||||||||||| ||||||||||||| || ||||  |||||||||  || |||    
T  29615318 ccactgcccccgcaatctcaaacaaggtcctctccatccaatattctagtggtaattcctataaccgaatccagacttgagaatgagtttgtttttacgt 29615417  T
Q  155 gtgcatgttgaagtcttttgtccattcaaatcatcagagtaagcctggcttcaagctaatactaccggctacccaaacggttcacatgtcctcttgtga 253  Q
    ||  ||||||||||| ||||| || |||||  |||  ||||| || |  |||||||||| | ||||| || |||||||||| | ||| || ||||||||    
T  29615418 gttaatgttgaagtcctttgtacactcaaacaatcttagtaatcccgatttcaagctaacagtaccgactgcccaaacggtgcgcatatcatcttgtga 29615516  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 60 - 185
Target Start/End: Original strand, 19975912 - 19976037
Alignment:
Q  60 gcccctgcgatctcatataaggttctctccatccagtactcctgtggtaattcccataaccgaatccaaacctgagtgtgagtttgtcgttgcgtgtgca 159  Q
    |||||||| || ||||| ||||||||||||||||| || |||||||| |||||||| | ||  |||||||| ||||| || ||||| ||||| || ||      
T  19975912 gcccctgctatttcatacaaggttctctccatccaatattcctgtggcaattcccacagccttatccaaacttgagtatgtgtttgccgttgagtatgtg 19976011  T
Q  160 tgttgaagtcttttgtccattcaaat 185  Q
      || || ||||||||||||||||||    
T  19976012 ctttaaaatcttttgtccattcaaat 19976037  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 60 - 185
Target Start/End: Complemental strand, 21016921 - 21016796
Alignment:
Q  60 gcccctgcgatctcatataaggttctctccatccagtactcctgtggtaattcccataaccgaatccaaacctgagtgtgagtttgtcgttgcgtgtgca 159  Q
    |||||||| || ||||| ||||||||||||||||| || |||||||| |||||||| | ||  |||||||| ||||| || ||||| ||||| || ||      
T  21016921 gcccctgctatttcatacaaggttctctccatccaatattcctgtggcaattcccacagccttatccaaacttgagtatgtgtttgccgttgagtatgtg 21016822  T
Q  160 tgttgaagtcttttgtccattcaaat 185  Q
      || || ||||||||||||||||||    
T  21016821 ctttaaaatcttttgtccattcaaat 21016796  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 185
Target Start/End: Complemental strand, 22716207 - 22716057
Alignment:
Q  35 atcaatgagtaacggagtttccaccgcccctgcgatctcatataaggttctctccatccagtactcctgtggtaattcccataaccgaatccaaacctga 134  Q
    ||||||||| || |||||  | ||||||||||| |||||  |||| || |||| |||||| || || ||||| ||||||||||| || |||||||| |||    
T  22716207 atcaatgagcaatggagtaccaaccgcccctgctatctccaataaagtcctctacatccaatattcttgtggcaattcccataaacggatccaaacttga 22716108  T
Q  135 gtgtgagtttgtcgttgcgtgtgcatgttgaagtcttttgtccattcaaat 185  Q
    |  || || || || ||||||||||| || ||||| || | ||||||||||    
T  22716107 gcatgtgtctgacgctgcgtgtgcatattaaagtccttcgaccattcaaat 22716057  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 185
Target Start/End: Complemental strand, 12481205 - 12481055
Alignment:
Q  35 atcaatgagtaacggagtttccaccgcccctgcgatctcatataaggttctctccatccagtactcctgtggtaattcccataaccgaatccaaacctga 134  Q
    ||||||||| || |||||  | ||||||||||| |||||  |||| ||  |||||||||| || || ||||| ||||||||||| || |||||||||| |    
T  12481205 atcaatgagcaatggagtaccaaccgcccctgctatctccaataaagtcttctccatccaatattcttgtggcaattcccataaacggatccaaacctta 12481106  T
Q  135 gtgtgagtttgtcgttgcgtgtgcatgttgaagtcttttgtccattcaaat 185  Q
    |  || ||||| || ||||||||||| || ||||| || | ||||||||||    
T  12481105 gcatgtgtttgacgatgcgtgtgcatattaaagtccttcgaccattcaaat 12481055  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 185
Target Start/End: Original strand, 12451590 - 12451740
Alignment:
Q  35 atcaatgagtaacggagtttccaccgcccctgcgatctcatataaggttctctccatccagtactcctgtggtaattcccataaccgaatccaaacctga 134  Q
    ||||||||| || |||||  | ||||||  ||| |||||  |||| || ||||||||||| || || ||||| ||||||||||| || ||||||||||||    
T  12451590 atcaatgagcaatggagtaccaaccgcctatgctatctccaataaagtcctctccatccaatattcttgtggcaattcccataaacggatccaaacctga 12451689  T
Q  135 gtgtgagtttgtcgttgcgtgtgcatgttgaagtcttttgtccattcaaat 185  Q
    |  || || || || ||||||||||| || ||||| || | ||||||||||    
T  12451690 gcatgtgtctgacgctgcgtgtgcatattaaagtccttcgaccattcaaat 12451740  T

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Target: scaffold0056 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 61 - 169
Target Start/End: Complemental strand, 77443 - 77335
Alignment:
Q  61 cccctgcgatctcatataaggttctctccatccagtactcctgtggtaattcccataaccgaatccaaacctgagtgtgagtttgtcgttgcgtgtgcat 160  Q
    ||||||| ||||| ||||| || ||||||||||| || || ||||| ||||||||||| || |||||||||| ||  || || || || |||||||||||    
T  77443 cccctgctatctcctataaagtcctctccatccaatattcttgtggcaattcccataaacggatccaaacctcagcatgtgtctgacgctgcgtgtgcat 77344  T
Q  161 gttgaagtc 169  Q
     || |||||    
T  77343 attaaagtc 77335  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 87 - 185
Target Start/End: Original strand, 32136422 - 32136520
Alignment:
Q  87 tccatccagtactcctgtggtaattcccataaccgaatccaaacctgagtgtgagtttgtcgttgcgtgtgcatgttgaagtcttttgtccattcaaat 185  Q
    ||||||||||| || ||||||||||||   |  |||||||| || ||||  ||||| | || |||| ||||||||||||| ||||| ||||||||||||    
T  32136422 tccatccagtattcttgtggtaattccatcaggcgaatccacacttgagcatgagtgtttctttgcttgtgcatgttgaaatctttagtccattcaaat 32136520  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 27505543 - 27505482
Alignment:
Q  69 atctcatataaggttctctccatccagtactcctgtggtaattcccataaccgaatccaaac 130  Q
    |||||||| ||  |||| |||||||||||||| || |||||||| ||||| |||||||||||    
T  27505543 atctcatacaaaattctttccatccagtactcttgcggtaattcacataaacgaatccaaac 27505482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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