View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13656_low_3 (Length: 514)
Name: NF13656_low_3
Description: NF13656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13656_low_3 |
 | |
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| [»] scaffold0039 (1 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 29495092 - 29494874
Alignment:
| Q |
11 |
cagagagtgtcgacaagcgtgctacggttgaaagaaaaccggcgacgggagagagcacaaatagataataatggagacacaatggatttcaatctgcgac |
110 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29495092 |
cagagagtgtcggcgagcgtgctacggttgaaagaaaaccggcgacgagagagagcacaaatagataataatggagacacaatggatttcaatcagcgac |
29494993 |
T |
|
| Q |
111 |
gggtgaaaggggagaatcgaagatcgacggtggcgacggtaaaatctcgcgagaggtgctagggttgggagaaaagggaaatcgcatgggagagagagat |
210 |
Q |
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|
||||||||||||||| |||||||||||||| ||||||||| ||||||||| |||||||||| ||||||||||||||||||| ||||||||||| ||||| |
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| T |
29494992 |
gggtgaaaggggagagtcgaagatcgacggcggcgacggtgaaatctcgc--gaggtgctagagttgggagaaaagggaaatggcatgggagagggagat |
29494895 |
T |
|
| Q |
211 |
gagaccaatcctctgctacag |
231 |
Q |
| |
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| ||| ||||||||||||||| |
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|
| T |
29494894 |
gggacgaatcctctgctacag |
29494874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 298 - 367
Target Start/End: Complemental strand, 29494805 - 29494737
Alignment:
| Q |
298 |
attaaatgtgccacacaagagggttgtatgagtggtatgccacctatggtggtatgggtatcagtactct |
367 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29494805 |
attaaatgtgccacacaagagggt-gtatgagtggtatgccacctatggtggtatgggtatcagtgctct |
29494737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 9e-62; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 367 - 491
Target Start/End: Original strand, 19707426 - 19707550
Alignment:
| Q |
367 |
taaaataaactcaaaacccttgaatgatttgaataatacatttaatgattccaatcatatgtgaaaaatgagttatgggtgtgtttaaagaatgattcaa |
466 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19707426 |
taaaataaactcaaaacccttgaatgatttgaatcatacatttaatgattccaatcatatgtgaaaaatgagttatgggtgtgtttaaagaatgattcaa |
19707525 |
T |
|
| Q |
467 |
atcgcagattttatgattctaatca |
491 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
19707526 |
atcgcagattttatgattctaatca |
19707550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 6608161 - 6607944
Alignment:
| Q |
12 |
agagagtgtcgacaagcgtgctacggttgaaagaaaaccggcgacgggagagagcacaaatagataataatggagacacaatggatttcaatctgcgacg |
111 |
Q |
| |
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|||||| |||| | || ||||||| ||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||| |||| | |
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| T |
6608161 |
agagagcgtcggcgagggtgctacagttaaaagaaaaccgccgacaagagagagcacaaatagataataatggagacacaatgaatttcaatcagcgatg |
6608062 |
T |
|
| Q |
112 |
ggtgaaaggggagaatcgaagatcgacggtggcgacggtaaaatctcgcgagaggtgctagggttgggagaaaagggaaatcgcatgggagagagagatg |
211 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||| |||||| || |||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
6608061 |
ggtgaaaggggagaatcgaatatcgacgacggcgacggcgaaatct--cgtgaggtgctagggttgggagaaaagggaaatggcatgagagagagagatg |
6607964 |
T |
|
| Q |
212 |
agaccaatcctctgctacag |
231 |
Q |
| |
|
| |||||||||| |||||| |
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| T |
6607963 |
ggcccaatcctctactacag |
6607944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 12 - 231
Target Start/End: Original strand, 6625945 - 6626156
Alignment:
| Q |
12 |
agagagtgtcgacaagcgtgctacggttgaaagaaaaccggcgacgggagagagcacaaatagataataatggagacacaatggatttcaatctgcgacg |
111 |
Q |
| |
|
|||||| |||| | || ||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||| |||| | |
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|
| T |
6625945 |
agagagcgtcggcgagggtgctacagttgaaagaaaaccgccgacaagagagagcacaaatagataataatggagacacaatgaatttcaatcagcgatg |
6626044 |
T |
|
| Q |
112 |
ggtgaaaggggagaatcgaagatcgacggtggcgacggtaaaatctcgcgagaggtgctagggttgggagaaaagggaaatcgcatgggagagagagatg |
211 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| |||||| || |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6626045 |
ggtgaaaggggagaatcgaatatcga------cgacggcgaaatct--cgtgaggtgctagggttgggagaaaagggaaatggcatgggagagagagatg |
6626136 |
T |
|
| Q |
212 |
agaccaatcctctgctacag |
231 |
Q |
| |
|
| |||||||||| |||||| |
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| T |
6626137 |
ggcccaatcctctactacag |
6626156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 368 - 466
Target Start/End: Original strand, 15087282 - 15087380
Alignment:
| Q |
368 |
aaaataaactcaaaacccttgaatgatttgaataatacatttaatgattccaatcatatgtgaaaaatgagttatgggtgtgtttaaagaatgattcaa |
466 |
Q |
| |
|
|||||||||||||||| || |||| ||||||| |||||||| |||||| || || | ||| |||||||||||||||||||||| ||||||||||||| |
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|
| T |
15087282 |
aaaataaactcaaaactctcaaatggtttgaatcatacatttgatgatttgaaacaaaggtgtaaaatgagttatgggtgtgtttgaagaatgattcaa |
15087380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 367
Target Start/End: Original strand, 6626648 - 6626717
Alignment:
| Q |
298 |
attaaatgtgccacacaagagggttgtatgagtggtatgccacctatggtggtatgggtatcagtactct |
367 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||| |||||| | |||| |||||||| |||| |
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| T |
6626648 |
attaaatgtgctacacaagaggggtgtatgagtggtatgccagctatggagatatgtgtatcagtgctct |
6626717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 12 - 209
Target Start/End: Complemental strand, 19843432 - 19843237
Alignment:
| Q |
12 |
agagagtgtcgacaagcgtgctacggttgaaagaaaaccggcgacgggagagagcacaaatagataataatggagacacaatggatttcaatctgcgacg |
111 |
Q |
| |
|
|||||| |||| | || ||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||| ||| || |
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|
| T |
19843432 |
agagagcgtcggcgagggtgctacagttgaaagaaaaccgccgacaagagagagcacaaatagataataatggagacacaatgaatttcaatcagcggcg |
19843333 |
T |
|
| Q |
112 |
ggtgaaaggggagaatcgaagatcgacggtggcgacggtaaaatctcgcgagaggtgctagggttgggagaaaagggaaatcgcatgggagagagaga |
209 |
Q |
| |
|
|||||||||||||||||||||||| ||| || |||||| |||||| || |||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
19843332 |
ggtgaaaggggagaatcgaagatcaacgacggtgacggtgaaatct--cgtgaggtgctagggttgggagaaaagggaaatggcatgggagagagaga |
19843237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 298 - 374
Target Start/End: Complemental strand, 19843148 - 19843072
Alignment:
| Q |
298 |
attaaatgtgccacacaagagggttgtatgagtggtatgccacctatggtggtatgggtatcagtactctaaaataa |
374 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |||||| |||||| || |||| ||||| ||||| |
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|
| T |
19843148 |
attaaatgtgccacacaagaggggtgtatgagtggtatgccagctatggaggtatgtataacagtgctctataataa |
19843072 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 368 - 491
Target Start/End: Complemental strand, 32070 - 31947
Alignment:
| Q |
368 |
aaaataaactcaaaacccttgaatgatttgaataatacatttaatgattccaatcatatgtgaaaaatgagttatgggtgtgtttaaagaatgattcaaa |
467 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
32070 |
aaaatatactcaaaacccttgaatgattcgaatcatacatttaatgattcaaatcatatgtgaaaaatgagttttgggtgtgtttaaagaatgattcaaa |
31971 |
T |
|
| Q |
468 |
tcgcagattttatgattctaatca |
491 |
Q |
| |
|
|| || |||| |||||||||||| |
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|
| T |
31970 |
tcacatatttattgattctaatca |
31947 |
T |
|
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Target: scaffold0010 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 368 - 489
Target Start/End: Original strand, 135258 - 135377
Alignment:
| Q |
368 |
aaaataaactcaaaacccttgaatgatttgaataatacatttaatgattccaatcatatgtgaaaaatgagttatgggtgtgtttaaagaatgattcaaa |
467 |
Q |
| |
|
|||||||||||||| |||| ||||||| ||| ||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||| || |
|
|
| T |
135258 |
aaaataaactcaaatccctcaaatgattcaaatcatacatttaatgatttgaatcatatgtgaaaaatgagttat--gtgtgtttgaagaatgattccaa |
135355 |
T |
|
| Q |
468 |
tcgcagattttatgattctaat |
489 |
Q |
| |
|
|| |||| ||||||| ||||| |
|
|
| T |
135356 |
tcatagatcttatgatgctaat |
135377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 209
Target Start/End: Original strand, 9793666 - 9793838
Alignment:
| Q |
29 |
gtgctacggttgaaagaaaaccggcgacgggagagagcacaaatagataataatggagacacaatggatttcaatctgcgacgggtgaaaggggagaatc |
128 |
Q |
| |
|
||||||||||||||||||||||| | || ||||||||||||| | |||||||||||| | ||||||||||||| ||||| ||||||||||||| ||| |
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|
| T |
9793666 |
gtgctacggttgaaagaaaaccgctggcgagagagagcacaaaggaagaataatggagacgcgatggatttcaatcagcgacaggtgaaaggggaggatc |
9793765 |
T |
|
| Q |
129 |
gaagatcgacggtggcgacggtaaaatctcgcgagaggtgctagggttgggagaaaagggaaatcgcatgggagagagaga |
209 |
Q |
| |
|
|| |||||| ||| || |||||| || |||||||||||||||||| ||||||||| ||||||| |||||||| |
|
|
| T |
9793766 |
gatgatcga------agacagtgaaatcttgc--aaggtgctagggttgggaggaaagggaaagggcatgggggagagaga |
9793838 |
T |
|
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