View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13656_low_4 (Length: 407)
Name: NF13656_low_4
Description: NF13656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13656_low_4 |
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| [»] scaffold0085 (2 HSPs) |
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Alignment Details
Target: scaffold0085 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 182 - 390
Target Start/End: Original strand, 46007 - 46215
Alignment:
| Q |
182 |
taattaacaaatcataataatcaatgatataagttaaactatgaagatgaaatgcgaagtgaataattctaaccagcgacagttacaaatccaacagtgt |
281 |
Q |
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| T |
46007 |
taattaacaaatcataataatcaatgatataagttaaactatgaagatgaaatgcgaagtgaataattctaaccagcgacagttacaaatccaacagtgt |
46106 |
T |
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| Q |
282 |
cgaactgcaaaacgccacagatttcgatcaattcagcttccttagttgcaaaatgattctccatctcttcgcatttgacgatgctggattcgatctcgcg |
381 |
Q |
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| T |
46107 |
cgaactgcaaaacgccacagattccgatcaattcagcttccttagttgcaaaatgattctccatctcttcgcatctgacgatgctggattcgatctcgcg |
46206 |
T |
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| Q |
382 |
tgtgacctg |
390 |
Q |
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||||||||| |
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| T |
46207 |
tgtgacctg |
46215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0085; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 45738 - 45949
Alignment:
| Q |
1 |
gagacaccaaacacaacagtgacacatagtgacacatcgagaccgataataatttnnnnnnntagcataataaaatgtaattatacctgtcagtgttgtg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45738 |
gagacaccaaacacaacagtgacacatagtgacacatcgagaccgataataatttaaaaaaatagcataataaaatgtaattatacctgtcagtgttgtg |
45837 |
T |
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| Q |
101 |
ttgatgttagacactaacagatgtcaaataccagacatgacttcattagaagttttggtgctctaaaggatgctataaatgtaattaacaaatcataata |
200 |
Q |
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| T |
45838 |
ttgatgttagacactaacagatgtcaaataccagacatgacttcattagaagttttggtgctctaaaggatgctataaatgtaattaacaaatcataata |
45937 |
T |
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| Q |
201 |
atcaatgatata |
212 |
Q |
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|||||||||||| |
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| T |
45938 |
atcaatgatata |
45949 |
T |
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