View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13656_low_5 (Length: 398)
Name: NF13656_low_5
Description: NF13656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13656_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 226 - 325
Target Start/End: Complemental strand, 31328843 - 31328741
Alignment:
| Q |
226 |
tgaatatagtacttgtcacaaccacatattcataaacttaatattatctcattcttc---nnnnnnnnaaggaatattatctcattcttgaaatgtatct |
322 |
Q |
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| T |
31328843 |
tgaatatagtacttgtcacaaccacatattcataaacttaatattatctcattcttcttttttttttgaaggaatattatctcattcttgaaatgtatct |
31328744 |
T |
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| Q |
323 |
tac |
325 |
Q |
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||| |
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| T |
31328743 |
tac |
31328741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 31328942 - 31328876
Alignment:
| Q |
114 |
acaataccaagaaatacccaaattttattctatcttcttattttacaaattcttatttttcccatga |
180 |
Q |
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| T |
31328942 |
acaataccaagaaatacccaaattttattctatcttcttagtttacaaattcttatttttcccatga |
31328876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 31329029 - 31328982
Alignment:
| Q |
25 |
cgggttggcctgacatattctcatccctaccgacaatagatatttcat |
72 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31329029 |
cgggttggcctgacatattctcatccctaccgacaatagatatttcat |
31328982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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