View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13656_low_9 (Length: 259)
Name: NF13656_low_9
Description: NF13656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13656_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 38293071 - 38292824
Alignment:
| Q |
1 |
attcatcaaccgaaccatctggttttgtttttagaggaggagaagttactgggataggtaaagtgaatttaggaagagcatatggcccttattcaagagt |
100 |
Q |
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| T |
38293071 |
attcatcaaccgaaccatctggttttgtttttagaggaggagaagttactgggattggtaaagtgaatttaggaagagcatatggcccttattcaagagt |
38292972 |
T |
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| Q |
101 |
tatattttggaagacacatctttcttctgtggtacttcctgaaggatgggatgcttggaaatatgctgaccatgagtaagttttaatgattaaatacnnn |
200 |
Q |
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| T |
38292971 |
tatattttgggaaacatacctttcttcagtggtactttcaggaggatgggatccttggaaatatggaggccatgagtaagttttaatgattaaatacttt |
38292872 |
T |
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| Q |
201 |
nnnnnnnatgcataagaatgaccatttttgggtgcttatattcttgga |
248 |
Q |
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| T |
38292871 |
tttttttatgcataagaatgaccatttttgggtgcatatattattgga |
38292824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 38300652 - 38300405
Alignment:
| Q |
1 |
attcatcaaccgaaccatctggttttgtttttagaggaggagaagttactgggataggtaaagtgaatttaggaagagcatatggcccttattcaagagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38300652 |
attcatcaaccgaaccatctggttttgtttttagaggaggagaagttactgggattggtaaagtgaatttaggaagagcatatggcccttattcaagagt |
38300553 |
T |
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| Q |
101 |
tatattttggaagacacatctttcttctgtggtacttcctgaaggatgggatgcttggaaatatgctgaccatgagtaagttttaatgattaaatacnnn |
200 |
Q |
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| T |
38300552 |
tatattttgggaaacatacctttcttcagtggtactttcaggaggatgggatccttggaaatatggaggccatgagtaagttttaatgattaaatacttt |
38300453 |
T |
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| Q |
201 |
nnnnnnnatgcataagaatgaccatttttgggtgcttatattcttgga |
248 |
Q |
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| T |
38300452 |
tttttttatgcataagaatgaccatttttgggtgcatatattattgga |
38300405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 38305562 - 38305405
Alignment:
| Q |
1 |
attcatcaaccgaaccatctggttttgtttttagaggagga-gaagttactgggataggtaaagtgaatttaggaagagcatatggcccttattcaagag |
99 |
Q |
| |
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||||||||| |||||| |||||||||||||||||||||| | | | || || || || ||||||||| ||||||| |||| |||||||||||||||| |
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| T |
38305562 |
attcatcaaatgaaccaagtggttttgtttttagaggaggacgcattgac-ggaattgggaaagtgaatctaggaagggcatggggcccttattcaagag |
38305464 |
T |
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| Q |
100 |
ttatattttggaagacacatctttcttctgtggtacttcctgaaggatgggatgcttgg |
158 |
Q |
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||||||||||| | ||| | |||||||| || ||||||||| ||||||||||||||||| |
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| T |
38305463 |
ttatattttgggaaacatacctttcttcggttgtacttcctcaaggatgggatgcttgg |
38305405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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