View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13657_low_2 (Length: 323)

Name: NF13657_low_2
Description: NF13657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13657_low_2
NF13657_low_2
[»] chr3 (3 HSPs)
chr3 (22-323)||(51112789-51113086)
chr3 (116-153)||(51120322-51120359)
chr3 (202-251)||(51120422-51120471)
[»] chr4 (5 HSPs)
chr4 (205-251)||(6007665-6007711)
chr4 (203-251)||(1547467-1547515)
chr4 (205-251)||(2460597-2460643)
chr4 (216-248)||(1486848-1486880)
chr4 (220-248)||(2367704-2367732)
[»] chr8 (1 HSPs)
chr8 (205-249)||(32152208-32152252)
[»] chr6 (3 HSPs)
chr6 (205-248)||(7993321-7993364)
chr6 (205-246)||(28935578-28935619)
chr6 (205-241)||(6437159-6437195)
[»] chr1 (1 HSPs)
chr1 (205-248)||(15837976-15838019)
[»] chr5 (2 HSPs)
chr5 (205-251)||(32268770-32268816)
chr5 (216-244)||(12846943-12846971)


Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 22 - 323
Target Start/End: Original strand, 51112789 - 51113086
Alignment:
Q  22 tgcggcaccacctacatctaaatgaaaatgaagagagcctccctcaaatattcgcaagaaattgtttcgtgcacaaaatcaacaatggttgcaacatatt 121  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  51112789 tgcggcaccacgtacatctaaatgaaaatgaagagagcctccctcaaatattcgcaacaaattgtttcgtgcacaaaatcaacaatggttgcaacagatt 51112888  T
Q  122 tctatttacctgatgactgttgggaatatgtcaaattcctcatcatcgacggttaccgtctccacttgaattttgtttctgttgtctcgaaacggttcct 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51112889 tctatttacctgatgactgttgggaatatgtcaaattcctcatcatggtcggttaccgtctccacttgaattttgtttctgttgtctcgaaacggttcct 51112988  T
Q  222 ctccatcaccaaccgtctccgattctctctagctatctatggtataacataccctttcctcactcgactctttctttcttagattcaccaacctcacctc 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||    
T  51112989 ctccatcaccaaccgtctccgattctctctagctatctatggtataacataccctttcctcactcgac----tctttcttagattcaccaacctcacctc 51113084  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 51120322 - 51120359
Alignment:
Q  116 catatttctatttacctgatgactgttgggaatatgtc 153  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  51120322 catatttctatttacctgatgactgttgggaatgtgtc 51120359  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 51120422 - 51120471
Alignment:
Q  202 gttgtctcgaaacggttcctctccatcaccaaccgtctccgattctctct 251  Q
    ||||||||||| | ||||||||| |||||||||| |||||||||||||||    
T  51120422 gttgtctcgaagcagttcctctctatcaccaaccttctccgattctctct 51120471  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 6007711 - 6007665
Alignment:
Q  205 gtctcgaaacggttcctctccatcaccaaccgtctccgattctctct 251  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||    
T  6007711 gtctcgaaacagttcctctccatcaccaacagtctccgattctctct 6007665  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 1547467 - 1547515
Alignment:
Q  203 ttgtctcgaaacggttcctctccatcaccaaccgtctccgattctctct 251  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||||||    
T  1547467 ttgtctccaaacaattcctctccatcaccaaccgtctccgattctctct 1547515  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 2460643 - 2460597
Alignment:
Q  205 gtctcgaaacggttcctctccatcaccaaccgtctccgattctctct 251  Q
    ||||| |||| |||||||||||||||||| |||||||||||||||||    
T  2460643 gtctccaaacagttcctctccatcaccaatcgtctccgattctctct 2460597  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 1486848 - 1486880
Alignment:
Q  216 gttcctctccatcaccaaccgtctccgattctc 248  Q
    ||||||||||| |||||||||||||||||||||    
T  1486848 gttcctctccaacaccaaccgtctccgattctc 1486880  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 2367704 - 2367732
Alignment:
Q  220 ctctccatcaccaaccgtctccgattctc 248  Q
    |||||||||||||||||||||||||||||    
T  2367704 ctctccatcaccaaccgtctccgattctc 2367732  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 32152252 - 32152208
Alignment:
Q  205 gtctcgaaacggttcctctccatcaccaaccgtctccgattctct 249  Q
    ||||| |||| ||||||||||||||||||| ||||||||||||||    
T  32152252 gtctccaaacagttcctctccatcaccaacagtctccgattctct 32152208  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 248
Target Start/End: Original strand, 7993321 - 7993364
Alignment:
Q  205 gtctcgaaacggttcctctccatcaccaaccgtctccgattctc 248  Q
    ||||| |||| ||||||||||||||||| |||||||||||||||    
T  7993321 gtctccaaacagttcctctccatcaccagccgtctccgattctc 7993364  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 28935619 - 28935578
Alignment:
Q  205 gtctcgaaacggttcctctccatcaccaaccgtctccgattc 246  Q
    |||||||||| ||||||||| ||||||||| |||||||||||    
T  28935619 gtctcgaaacagttcctctctatcaccaacagtctccgattc 28935578  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 6437195 - 6437159
Alignment:
Q  205 gtctcgaaacggttcctctccatcaccaaccgtctcc 241  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  6437195 gtctccaaacagttcctctccatcaccaaccgtctcc 6437159  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 248
Target Start/End: Original strand, 15837976 - 15838019
Alignment:
Q  205 gtctcgaaacggttcctctccatcaccaaccgtctccgattctc 248  Q
    ||||| |||| ||| |||||||||||||||||||||||||||||    
T  15837976 gtctccaaacagtttctctccatcaccaaccgtctccgattctc 15838019  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 32268816 - 32268770
Alignment:
Q  205 gtctcgaaacggttcctctccatcaccaaccgtctccgattctctct 251  Q
    ||||| |||| ||| |||||||||||||||||||| |||||||||||    
T  32268816 gtctccaaacagttactctccatcaccaaccgtcttcgattctctct 32268770  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 244
Target Start/End: Complemental strand, 12846971 - 12846943
Alignment:
Q  216 gttcctctccatcaccaaccgtctccgat 244  Q
    |||||||||||||||||||||||||||||    
T  12846971 gttcctctccatcaccaaccgtctccgat 12846943  T

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