View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13658_low_2 (Length: 410)

Name: NF13658_low_2
Description: NF13658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13658_low_2
NF13658_low_2
[»] chr3 (5 HSPs)
chr3 (19-396)||(36725023-36725390)
chr3 (182-242)||(44284124-44284184)
chr3 (192-242)||(44374720-44374770)
chr3 (190-242)||(40122826-40122878)
chr3 (198-242)||(42808923-42808967)
[»] chr8 (6 HSPs)
chr8 (19-112)||(42171430-42171523)
chr8 (198-242)||(11000643-11000687)
chr8 (203-242)||(10218858-10218897)
chr8 (192-242)||(31915345-31915395)
chr8 (192-240)||(787182-787230)
chr8 (196-228)||(8823473-8823505)
[»] chr6 (4 HSPs)
chr6 (185-243)||(2205637-2205695)
chr6 (192-229)||(7713982-7714019)
chr6 (198-275)||(34405017-34405093)
chr6 (198-242)||(21959672-21959716)
[»] chr4 (5 HSPs)
chr4 (198-242)||(34368821-34368865)
chr4 (192-242)||(9680608-9680658)
chr4 (192-242)||(54327525-54327575)
chr4 (183-255)||(51044525-51044597)
chr4 (198-242)||(4500812-4500856)
[»] chr2 (5 HSPs)
chr2 (198-242)||(40758967-40759011)
chr2 (186-242)||(3227731-3227787)
chr2 (192-228)||(11344360-11344396)
chr2 (195-243)||(31461381-31461429)
chr2 (191-243)||(32098383-32098435)
[»] chr1 (5 HSPs)
chr1 (185-228)||(14737774-14737817)
chr1 (240-275)||(40304192-40304227)
chr1 (183-242)||(50319236-50319295)
chr1 (237-282)||(44375472-44375517)
chr1 (198-242)||(36151587-36151631)
[»] chr5 (2 HSPs)
chr5 (194-228)||(39128597-39128631)
chr5 (192-228)||(42181168-42181204)
[»] chr7 (3 HSPs)
chr7 (192-228)||(1417222-1417258)
chr7 (192-228)||(39591543-39591579)
chr7 (188-228)||(44239052-44239092)


Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 396
Target Start/End: Original strand, 36725023 - 36725390
Alignment:
Q  19 gtttaggctgcaagttttggaggaagtaatattgatccaacagcttgggaggataagaagtgccctggtgaatctcgtttcccagctcaggtataatctc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36725023 gtttaggctgcaagttttggaggaagtaatattgatccaacagcttgggaggataagaagtgccctggtgaatctcgtttccctgctcaggtataatctc 36725122  T
Q  119 caatccaattattatcgttctatttcattgacttatttgtgtttatctaccggcttaaatgctcaggatagtttatgagaacaatttgactttgttttat 218  Q
    ||||||||||||||||          || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36725123 caatccaattattatc----------atcgacttatttgtgtttatctaccggcttaaatgctcaggatagtttatgagaacaatttgactttgttttat 36725212  T
Q  219 cttttgttatggatacagcttatatgataaacacttacagtataagtgcttaattaaactgtttgtctaaagctaatgaatttggacacatgatgtttgc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36725213 cttttgttatggatacagcttatatgataaacacttacagtataagtgcttaatttaactgtttgtctaaagctaatgaatttggacacatgatgtttgc 36725312  T
Q  319 aggtacaagtgatcacaagaaaagtttgtgagccattagaggaggattcctttagaccaattcttcatcacgatgatg 396  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36725313 aggtacaagtgataactagaaaagtttgtgagccattagaggaggattcctttagaccaattcttcatcactatgatg 36725390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 44284124 - 44284184
Alignment:
Q  182 caggatagtttatgagaacaatttgactttgttttatcttttgttatggatacagcttata 242  Q
    |||||||| |||||| |||| |||||||||||||||| ||||||||| || | ||||||||    
T  44284124 caggatagcttatgaaaacagtttgactttgttttattttttgttatagaaatagcttata 44284184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 44374720 - 44374770
Alignment:
Q  192 tatgagaacaatttgactttgttttatcttttgttatggatacagcttata 242  Q
    ||||| |||||||||||||| |||||||||||||||  |||| ||||||||    
T  44374720 tatgaaaacaatttgactttattttatcttttgttaaagatatagcttata 44374770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 40122826 - 40122878
Alignment:
Q  190 tttatgagaacaatttgactttgttttatcttttgttatggatacagcttata 242  Q
    ||||||| |||| ||||||||| |||||||||||||||| || | ||||||||    
T  40122826 tttatgaaaacagtttgactttattttatcttttgttattgaaatagcttata 40122878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 42808967 - 42808923
Alignment:
Q  198 aacaatttgactttgttttatcttttgttatggatacagcttata 242  Q
    |||||||| ||||| |||||||||||||||| || ||||||||||    
T  42808967 aacaatttaactttattttatcttttgttatagaaacagcttata 42808923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 42171523 - 42171430
Alignment:
Q  19 gtttaggctgcaagttttggaggaagtaatattgatccaacagcttgggaggataagaagtgccctggtgaatctcgtttcccagctcaggtat 112  Q
    |||||||||||||||||||| ||||  |||||||||||||| ||||||||||| ||||||||  |||| |||||||||||||| ||||||||||    
T  42171523 gtttaggctgcaagttttggtggaacaaatattgatccaacggcttgggaggacaagaagtgtgctggcgaatctcgtttccctgctcaggtat 42171430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 11000643 - 11000687
Alignment:
Q  198 aacaatttgactttgttttatcttttgttatggatacagcttata 242  Q
    |||||||||||||| ||||||||||||||||||| | ||||||||    
T  11000643 aacaatttgactttattttatcttttgttatggaaatagcttata 11000687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 10218897 - 10218858
Alignment:
Q  203 tttgactttgttttatcttttgttatggatacagcttata 242  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  10218897 tttgactttattttatcttttgttatggaaacagcttata 10218858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 31915345 - 31915395
Alignment:
Q  192 tatgagaacaatttgactttgttttatcttttgttatggatacagcttata 242  Q
    ||||| |||||||||||||| || ||||||||||||| |||| ||||||||    
T  31915345 tatgaaaacaatttgactttattctatcttttgttatagatatagcttata 31915395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 787182 - 787230
Alignment:
Q  192 tatgagaacaatttgactttgttttatcttttgttatggatacagctta 240  Q
    ||||| |||||||||||||| ||||||||| ||||| ||| ||||||||    
T  787182 tatgataacaatttgactttattttatcttatgttacggaaacagctta 787230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 8823473 - 8823505
Alignment:
Q  196 agaacaatttgactttgttttatcttttgttat 228  Q
    |||||||| ||||||||||||||||||||||||    
T  8823473 agaacaatctgactttgttttatcttttgttat 8823505  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 2205637 - 2205695
Alignment:
Q  185 gatagtttatgagaacaatttgactttgttttatcttttgttatggatacagcttatat 243  Q
    ||||| |||||| ||||||||||||||||||||||||||||| | || | |||||||||    
T  2205637 gatagcttatgaaaacaatttgactttgttttatcttttgttttagaaatagcttatat 2205695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 7714019 - 7713982
Alignment:
Q  192 tatgagaacaatttgactttgttttatcttttgttatg 229  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  7714019 tatgaaaacaatttgactttattttatcttttgttatg 7713982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 34405093 - 34405017
Alignment:
Q  198 aacaatttgactttgttttatcttttgttatggatacagcttatatgataaacacttacagtataagtgcttaattaa 275  Q
    |||||||||||||| ||||| ||||| |||| || | |||||||| |||||||||||| |  |||||| |||||||||    
T  34405093 aacaatttgactttattttaacttttattatagaaatagcttata-gataaacacttatatcataagtccttaattaa 34405017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 21959716 - 21959672
Alignment:
Q  198 aacaatttgactttgttttatcttttgttatggatacagcttata 242  Q
    ||||| |||||||| ||||||||||||||||||| | ||||||||    
T  21959716 aacaaattgactttattttatcttttgttatggaaatagcttata 21959672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 34368865 - 34368821
Alignment:
Q  198 aacaatttgactttgttttatcttttgttatggatacagcttata 242  Q
    ||||||||||||||||||||||||||||||| || | ||||||||    
T  34368865 aacaatttgactttgttttatcttttgttatagaaatagcttata 34368821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 9680658 - 9680608
Alignment:
Q  192 tatgagaacaatttgactttgttttatcttttgttatggatacagcttata 242  Q
    |||||||||||||||||||| ||||||||||| |||| || | ||||||||    
T  9680658 tatgagaacaatttgactttattttatcttttattatcgaaatagcttata 9680608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 54327525 - 54327575
Alignment:
Q  192 tatgagaacaatttgactttgttttatcttttgttatggatacagcttata 242  Q
    ||||| |||| |||||||||||||||||||||||||| || ||| ||||||    
T  54327525 tatgaaaacagtttgactttgttttatcttttgttatagaaacaacttata 54327575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 51044525 - 51044597
Alignment:
Q  183 aggatagtttatgagaacaa-tttgactttgttttatcttttgttatggatacagcttatatgataaacactta 255  Q
    ||||||| |||||| ||||| ||||||||| |||||||||||||||| || | ||||||||  |||||||||||    
T  51044525 aggatagcttatgaaaacaagtttgactttattttatcttttgttatagaaatagcttata-cataaacactta 51044597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 4500856 - 4500812
Alignment:
Q  198 aacaatttgactttgttttatcttttgttatggatacagcttata 242  Q
    |||||||| |||||||||||| |||| |||| |||||||||||||    
T  4500856 aacaatttaactttgttttattttttattatagatacagcttata 4500812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 40759011 - 40758967
Alignment:
Q  198 aacaatttgactttgttttatcttttgttatggatacagcttata 242  Q
    |||||||||||||| ||||||||||||||||||| | ||||||||    
T  40759011 aacaatttgactttattttatcttttgttatggaaatagcttata 40758967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 3227731 - 3227787
Alignment:
Q  186 atagtttatgagaacaatttgactttgttttatcttttgttatggatacagcttata 242  Q
    |||| |||||| |||||||| |||||||||||| |||| |||| || ||||||||||    
T  3227731 atagcttatgaaaacaatttaactttgttttattttttattatagaaacagcttata 3227787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 11344360 - 11344396
Alignment:
Q  192 tatgagaacaatttgactttgttttatcttttgttat 228  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  11344360 tatgaaaacaatttgactttcttttatcttttgttat 11344396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 31461429 - 31461381
Alignment:
Q  195 gagaacaatttgactttgttttatcttttgttatggatacagcttatat 243  Q
    ||||| ||||||||||| |||||||||||||||| || | |||||||||    
T  31461429 gagaataatttgactttattttatcttttgttatagaaatagcttatat 31461381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 32098383 - 32098435
Alignment:
Q  191 ttatgagaacaatttgactttgttttatcttttgttatggatacagcttatat 243  Q
    |||||| |||| ||||||||| |||||||||||||||| || | |||||||||    
T  32098383 ttatgaaaacactttgactttattttatcttttgttatagaaatagcttatat 32098435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 14737774 - 14737817
Alignment:
Q  185 gatagtttatgagaacaatttgactttgttttatcttttgttat 228  Q
    ||||| |||||| |||||||||||||| ||||||||||||||||    
T  14737774 gatagcttatgaaaacaatttgactttattttatcttttgttat 14737817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 40304192 - 40304227
Alignment:
Q  240 atatgataaacacttacagtataagtgcttaattaa 275  Q
    |||||||||||||||||| |||||||||||||||||    
T  40304192 atatgataaacacttacactataagtgcttaattaa 40304227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 50319295 - 50319236
Alignment:
Q  183 aggatagtttatgagaacaatttgactttgttttatcttttgttatggatacagcttata 242  Q
    ||||||| |||||| ||||| |||||||| |||||||||||||||| || | ||||||||    
T  50319295 aggatagcttatgaaaacaacttgactttattttatcttttgttatagaaatagcttata 50319236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 44375472 - 44375517
Alignment:
Q  237 cttatatgataaacacttacagtataagtgcttaattaaactgttt 282  Q
    |||||| ||||||||||||   ||||||||||||||||||||||||    
T  44375472 cttataagataaacacttaggttataagtgcttaattaaactgttt 44375517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 36151587 - 36151631
Alignment:
Q  198 aacaatttgactttgttttatcttttgttatggatacagcttata 242  Q
    |||||||||||||| |||||||||||||||| || | ||||||||    
T  36151587 aacaatttgactttattttatcttttgttattgaaatagcttata 36151631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 228
Target Start/End: Complemental strand, 39128631 - 39128597
Alignment:
Q  194 tgagaacaatttgactttgttttatcttttgttat 228  Q
    |||||||||||||||||| ||||||||||||||||    
T  39128631 tgagaacaatttgactttattttatcttttgttat 39128597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 42181168 - 42181204
Alignment:
Q  192 tatgagaacaatttgactttgttttatcttttgttat 228  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  42181168 tatgaaaaccatttgactttgttttatcttttgttat 42181204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 1417258 - 1417222
Alignment:
Q  192 tatgagaacaatttgactttgttttatcttttgttat 228  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  1417258 tatgaaaacaatttgactttattttatcttttgttat 1417222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 39591543 - 39591579
Alignment:
Q  192 tatgagaacaatttgactttgttttatcttttgttat 228  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  39591543 tatgaaaacaatttgactttattttatcttttgttat 39591579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 44239052 - 44239092
Alignment:
Q  188 agtttatgagaacaatttgactttgttttatcttttgttat 228  Q
    ||||||||| |||| ||||||||| ||||||||||||||||    
T  44239052 agtttatgaaaacattttgactttattttatcttttgttat 44239092  T

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