View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13658_low_4 (Length: 383)

Name: NF13658_low_4
Description: NF13658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13658_low_4
NF13658_low_4
[»] chr4 (54 HSPs)
chr4 (184-367)||(54984131-54984315)
chr4 (10-120)||(54983966-54984076)
chr4 (9-120)||(6207306-6207417)
chr4 (13-120)||(44356534-44356641)
chr4 (27-120)||(20112300-20112393)
chr4 (28-120)||(51362610-51362702)
chr4 (13-120)||(2654105-2654212)
chr4 (13-120)||(2836970-2837077)
chr4 (28-120)||(2016862-2016954)
chr4 (13-120)||(6637199-6637306)
chr4 (33-124)||(8965672-8965763)
chr4 (13-120)||(21597538-21597645)
chr4 (27-114)||(51371540-51371627)
chr4 (27-120)||(10059847-10059940)
chr4 (13-114)||(43074724-43074825)
chr4 (27-120)||(53312358-53312451)
chr4 (27-123)||(4796190-4796286)
chr4 (13-120)||(16292339-16292446)
chr4 (13-120)||(14449420-14449527)
chr4 (13-95)||(49185665-49185747)
chr4 (13-120)||(12719581-12719688)
chr4 (30-124)||(21322864-21322958)
chr4 (27-120)||(1420694-1420787)
chr4 (27-120)||(31553392-31553485)
chr4 (40-124)||(25909554-25909638)
chr4 (13-108)||(8070708-8070803)
chr4 (13-120)||(21871523-21871630)
chr4 (13-120)||(21927384-21927491)
chr4 (13-120)||(29697593-29697699)
chr4 (14-124)||(53924888-53924998)
chr4 (27-120)||(23759724-23759817)
chr4 (13-109)||(34567752-34567848)
chr4 (25-104)||(1571482-1571561)
chr4 (27-90)||(51233582-51233644)
chr4 (14-89)||(54855405-54855480)
chr4 (27-104)||(20118053-20118130)
chr4 (40-104)||(27978778-27978842)
chr4 (13-89)||(35393402-35393478)
chr4 (27-110)||(21451539-21451621)
chr4 (13-112)||(50769442-50769541)
chr4 (16-115)||(52462927-52463026)
chr4 (62-120)||(3658023-3658081)
chr4 (14-120)||(14016796-14016902)
chr4 (27-112)||(11824267-11824351)
chr4 (41-90)||(28291817-28291866)
chr4 (27-120)||(47999600-47999693)
chr4 (27-90)||(35383909-35383972)
chr4 (40-90)||(2016356-2016406)
chr4 (40-90)||(6289294-6289344)
chr4 (40-90)||(9119502-9119552)
chr4 (40-90)||(10308527-10308576)
chr4 (40-90)||(40489311-40489361)
chr4 (55-120)||(55732639-55732704)
chr4 (13-69)||(42526099-42526155)
[»] chr5 (39 HSPs)
chr5 (13-120)||(2974704-2974811)
chr5 (13-120)||(25910794-25910901)
chr5 (27-120)||(3333851-3333944)
chr5 (13-120)||(36798242-36798348)
chr5 (13-123)||(3999234-3999344)
chr5 (13-115)||(34320083-34320185)
chr5 (13-120)||(9852857-9852964)
chr5 (13-120)||(12406176-12406283)
chr5 (13-120)||(31080547-31080654)
chr5 (14-120)||(27904620-27904726)
chr5 (15-120)||(35166366-35166471)
chr5 (40-120)||(19131663-19131743)
chr5 (13-120)||(32391855-32391962)
chr5 (13-120)||(20629880-20629987)
chr5 (13-120)||(26702507-26702613)
chr5 (13-120)||(26972240-26972346)
chr5 (13-120)||(40276165-40276272)
chr5 (27-120)||(16132815-16132908)
chr5 (13-90)||(43098163-43098240)
chr5 (13-120)||(22300671-22300778)
chr5 (10-120)||(20512267-20512377)
chr5 (27-104)||(26563075-26563152)
chr5 (25-112)||(25363904-25363991)
chr5 (13-120)||(30604223-30604330)
chr5 (29-112)||(37897870-37897953)
chr5 (10-124)||(39574305-39574416)
chr5 (65-119)||(9852973-9853027)
chr5 (25-111)||(18403066-18403152)
chr5 (13-90)||(6130394-6130470)
chr5 (13-110)||(19340900-19340997)
chr5 (40-112)||(40133072-40133143)
chr5 (40-90)||(10332057-10332107)
chr5 (13-71)||(24779393-24779451)
chr5 (14-104)||(28446091-28446181)
chr5 (40-90)||(39049118-39049168)
chr5 (25-66)||(2710484-2710525)
chr5 (40-93)||(4146300-4146353)
chr5 (40-93)||(12881766-12881819)
chr5 (27-67)||(15526846-15526886)
[»] chr7 (32 HSPs)
chr7 (13-120)||(15107128-15107235)
chr7 (25-120)||(36580423-36580518)
chr7 (27-120)||(17931880-17931973)
chr7 (13-120)||(20184988-20185094)
chr7 (13-124)||(35250185-35250296)
chr7 (28-120)||(18504314-18504406)
chr7 (27-104)||(8073961-8074038)
chr7 (13-112)||(36903341-36903440)
chr7 (10-112)||(15348029-15348131)
chr7 (27-124)||(18186601-18186698)
chr7 (61-120)||(15029132-15029191)
chr7 (13-120)||(29834287-29834394)
chr7 (25-112)||(41243721-41243808)
chr7 (13-120)||(28785891-28785998)
chr7 (27-113)||(6726405-6726490)
chr7 (48-120)||(3381933-3382004)
chr7 (27-103)||(4049797-4049873)
chr7 (44-108)||(23826102-23826166)
chr7 (38-120)||(28350187-28350269)
chr7 (44-120)||(17876240-17876316)
chr7 (35-114)||(20505147-20505226)
chr7 (13-115)||(23745968-23746068)
chr7 (40-87)||(38974603-38974650)
chr7 (40-90)||(36801763-36801813)
chr7 (41-90)||(784773-784822)
chr7 (44-109)||(45717980-45718045)
chr7 (40-93)||(47350991-47351044)
chr7 (47-120)||(47909764-47909837)
chr7 (56-120)||(9500080-9500144)
chr7 (35-123)||(13889623-13889710)
chr7 (16-120)||(21505757-21505860)
chr7 (28-68)||(40872317-40872357)
[»] chr3 (48 HSPs)
chr3 (13-120)||(44436534-44436641)
chr3 (27-120)||(54719147-54719240)
chr3 (27-120)||(51315634-51315727)
chr3 (13-109)||(3916511-3916607)
chr3 (31-123)||(35359064-35359156)
chr3 (13-120)||(44433201-44433307)
chr3 (27-120)||(44585936-44586029)
chr3 (13-112)||(14856692-14856791)
chr3 (13-120)||(33329753-33329860)
chr3 (18-120)||(27178288-27178390)
chr3 (27-120)||(43747430-43747523)
chr3 (25-120)||(1938387-1938482)
chr3 (13-120)||(47189730-47189837)
chr3 (29-112)||(54464241-54464324)
chr3 (34-119)||(791477-791562)
chr3 (13-114)||(28204622-28204723)
chr3 (27-120)||(28712525-28712618)
chr3 (27-103)||(36687741-36687817)
chr3 (13-104)||(19404530-19404621)
chr3 (13-104)||(20432320-20432411)
chr3 (18-104)||(38177263-38177349)
chr3 (13-110)||(7218287-7218384)
chr3 (27-120)||(48348409-48348501)
chr3 (14-124)||(52008309-52008421)
chr3 (27-115)||(25843441-25843529)
chr3 (56-120)||(38957917-38957981)
chr3 (13-120)||(1814693-1814797)
chr3 (27-113)||(46226775-46226861)
chr3 (31-104)||(43586715-43586788)
chr3 (27-104)||(44624711-44624787)
chr3 (27-103)||(36677661-36677737)
chr3 (44-104)||(49787337-49787397)
chr3 (13-124)||(86640-86751)
chr3 (15-89)||(3192874-3192949)
chr3 (25-112)||(14340882-14340969)
chr3 (27-89)||(578563-578625)
chr3 (27-89)||(36567024-36567086)
chr3 (40-90)||(50724841-50724891)
chr3 (40-90)||(50787959-50788009)
chr3 (39-120)||(36315922-36316003)
chr3 (13-112)||(8024918-8025017)
chr3 (27-89)||(14992781-14992843)
chr3 (27-120)||(25248761-25248854)
chr3 (40-90)||(43001787-43001837)
chr3 (40-90)||(53764675-53764725)
chr3 (41-90)||(40410038-40410087)
chr3 (13-73)||(12759644-12759704)
chr3 (76-120)||(22494623-22494667)
[»] chr2 (40 HSPs)
chr2 (13-120)||(34760918-34761025)
chr2 (13-120)||(37431614-37431721)
chr2 (13-104)||(41196366-41196457)
chr2 (13-120)||(44617875-44617982)
chr2 (15-124)||(24306157-24306266)
chr2 (13-120)||(37803194-37803300)
chr2 (13-113)||(24472583-24472683)
chr2 (13-120)||(8857117-8857224)
chr2 (13-120)||(39918505-39918612)
chr2 (13-123)||(5008424-5008534)
chr2 (27-120)||(5470487-5470580)
chr2 (27-124)||(25333565-25333662)
chr2 (13-120)||(6510071-6510177)
chr2 (13-113)||(27489510-27489610)
chr2 (30-120)||(2609242-2609332)
chr2 (27-113)||(43028871-43028957)
chr2 (27-112)||(6592805-6592890)
chr2 (27-120)||(14943695-14943788)
chr2 (31-120)||(25411612-25411701)
chr2 (13-113)||(31827603-31827704)
chr2 (13-109)||(18969230-18969326)
chr2 (27-90)||(4576693-4576756)
chr2 (13-120)||(14489284-14489391)
chr2 (40-90)||(34600648-34600698)
chr2 (27-113)||(34679175-34679261)
chr2 (41-90)||(16238386-16238435)
chr2 (31-120)||(35718716-35718805)
chr2 (44-120)||(32969628-32969704)
chr2 (13-120)||(4925510-4925617)
chr2 (27-112)||(15022916-15023002)
chr2 (61-118)||(16043206-16043263)
chr2 (27-104)||(19895764-19895841)
chr2 (38-87)||(22333231-22333280)
chr2 (27-71)||(36195729-36195773)
chr2 (13-104)||(8553680-8553770)
chr2 (27-106)||(25092380-25092459)
chr2 (28-70)||(19399328-19399370)
chr2 (40-90)||(28451868-28451918)
chr2 (40-90)||(37343845-37343895)
chr2 (38-91)||(37551903-37551956)
[»] chr8 (33 HSPs)
chr8 (27-120)||(29657774-29657868)
chr8 (13-112)||(45177280-45177379)
chr8 (27-120)||(30539141-30539234)
chr8 (33-120)||(37813247-37813334)
chr8 (13-114)||(29790834-29790935)
chr8 (13-120)||(16982747-16982853)
chr8 (25-120)||(21486725-21486820)
chr8 (27-120)||(3676278-3676371)
chr8 (27-120)||(6807319-6807412)
chr8 (25-104)||(20699344-20699422)
chr8 (30-116)||(39889926-39890012)
chr8 (13-120)||(41487346-41487453)
chr8 (31-112)||(14880414-14880495)
chr8 (27-120)||(20853447-20853540)
chr8 (27-104)||(29044697-29044774)
chr8 (13-112)||(23702271-23702370)
chr8 (27-104)||(22846530-22846607)
chr8 (13-109)||(25144024-25144120)
chr8 (40-120)||(37939982-37940061)
chr8 (13-104)||(9762287-9762378)
chr8 (26-120)||(32071164-32071258)
chr8 (41-90)||(33984072-33984121)
chr8 (27-111)||(27545420-27545503)
chr8 (30-86)||(36688159-36688215)
chr8 (25-88)||(22192446-22192509)
chr8 (40-90)||(13229513-13229563)
chr8 (27-100)||(33298430-33298503)
chr8 (13-87)||(35213165-35213239)
chr8 (40-90)||(36624074-36624124)
chr8 (39-120)||(45309483-45309564)
chr8 (44-112)||(41567102-41567170)
chr8 (40-104)||(44269282-44269346)
chr8 (45-112)||(45457158-45457226)
[»] chr6 (23 HSPs)
chr6 (13-114)||(5003215-5003316)
chr6 (27-120)||(26311554-26311647)
chr6 (13-120)||(10727330-10727437)
chr6 (13-120)||(18031078-18031185)
chr6 (13-120)||(33399855-33399962)
chr6 (14-120)||(32143329-32143435)
chr6 (16-112)||(6036799-6036895)
chr6 (27-115)||(20474855-20474943)
chr6 (13-120)||(30349419-30349526)
chr6 (27-104)||(11351722-11351799)
chr6 (44-120)||(2853582-2853658)
chr6 (27-111)||(3812820-3812903)
chr6 (27-90)||(239095-239158)
chr6 (13-120)||(266248-266354)
chr6 (13-120)||(1377278-1377385)
chr6 (13-120)||(1385026-1385133)
chr6 (13-120)||(17248707-17248814)
chr6 (13-120)||(17532322-17532428)
chr6 (25-120)||(26601531-26601626)
chr6 (65-112)||(6036723-6036770)
chr6 (40-90)||(929369-929419)
chr6 (40-90)||(11108897-11108947)
chr6 (41-90)||(28960538-28960587)
[»] chr1 (35 HSPs)
chr1 (13-120)||(3377572-3377679)
chr1 (13-120)||(17760755-17760862)
chr1 (13-114)||(16298193-16298294)
chr1 (13-120)||(44672383-44672490)
chr1 (27-120)||(16874653-16874746)
chr1 (31-120)||(39642362-39642451)
chr1 (27-120)||(45739006-45739099)
chr1 (13-120)||(14978867-14978974)
chr1 (13-120)||(23220637-23220744)
chr1 (13-104)||(49426129-49426219)
chr1 (27-104)||(14190692-14190769)
chr1 (28-120)||(1096538-1096630)
chr1 (28-120)||(6569658-6569750)
chr1 (13-124)||(25486281-25486391)
chr1 (27-104)||(5287377-5287454)
chr1 (14-87)||(7060776-7060849)
chr1 (14-95)||(25085530-25085611)
chr1 (27-112)||(41997791-41997876)
chr1 (27-120)||(50401442-50401534)
chr1 (13-120)||(7579735-7579842)
chr1 (13-112)||(12960981-12961080)
chr1 (13-120)||(30849366-30849473)
chr1 (13-120)||(32295089-32295196)
chr1 (28-122)||(20224682-20224775)
chr1 (13-115)||(48319479-48319581)
chr1 (41-90)||(5225516-5225565)
chr1 (27-119)||(50226541-50226633)
chr1 (29-120)||(8301497-8301588)
chr1 (27-114)||(16545637-16545724)
chr1 (27-120)||(46572897-46572988)
chr1 (27-112)||(44436836-44436920)
chr1 (27-104)||(46912341-46912418)
chr1 (27-114)||(18632392-18632479)
chr1 (40-90)||(22182486-22182536)
chr1 (44-100)||(23891802-23891858)
[»] scaffold0015 (1 HSPs)
scaffold0015 (13-116)||(76937-77039)
[»] scaffold0248 (1 HSPs)
scaffold0248 (25-120)||(474-569)
[»] scaffold0062 (1 HSPs)
scaffold0062 (30-120)||(46228-46318)
[»] scaffold0578 (1 HSPs)
scaffold0578 (30-123)||(3143-3236)
[»] scaffold0011 (1 HSPs)
scaffold0011 (13-116)||(145428-145531)
[»] scaffold0137 (1 HSPs)
scaffold0137 (25-109)||(19995-20079)
[»] scaffold0417 (1 HSPs)
scaffold0417 (25-103)||(9425-9503)
[»] scaffold0194 (1 HSPs)
scaffold0194 (27-120)||(25050-25142)
[»] scaffold0328 (1 HSPs)
scaffold0328 (44-120)||(9482-9558)
[»] scaffold0025 (1 HSPs)
scaffold0025 (28-120)||(19180-19272)
[»] scaffold0047 (1 HSPs)
scaffold0047 (40-93)||(63133-63186)
[»] scaffold2010 (1 HSPs)
scaffold2010 (38-90)||(594-646)
[»] scaffold0372 (1 HSPs)
scaffold0372 (27-110)||(204-286)
[»] scaffold0016 (1 HSPs)
scaffold0016 (61-112)||(203360-203411)
[»] scaffold0150 (1 HSPs)
scaffold0150 (44-124)||(9704-9783)
[»] scaffold1301 (1 HSPs)
scaffold1301 (55-90)||(1225-1260)
[»] scaffold0166 (1 HSPs)
scaffold0166 (13-71)||(21776-21834)
[»] scaffold0021 (1 HSPs)
scaffold0021 (40-90)||(157374-157424)
[»] scaffold0041 (1 HSPs)
scaffold0041 (28-68)||(93925-93965)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 3e-95; HSPs: 54)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 184 - 367
Target Start/End: Original strand, 54984131 - 54984315
Alignment:
Q  184 cctatcatcatatttatcaa-ccgccacatcattgtttagggtttacacctgtataaatatatagaagactcctctacttgtcaccaccttttctaggaa 282  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54984131 cctatcatcatatttatcaaaccgccacatcattgtttagggtttacacctgtataaatatatagaagactcctctacttgtcaccaccttttctaggaa 54984230  T
Q  283 aaaccgttgtcattcttgttttcgttttctctttggacttttctcttccatattcctatcctcaccaacttcaaagtttaccaat 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54984231 aaaccgttgtcattcttgttttcgttttctctttggacttttctcttccatattcctatcctcaccaacttcaaagtttaccaat 54984315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 54983966 - 54984076
Alignment:
Q  10 aagaaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttag 109  Q
    |||||||||||||||| |||||||||||| |||||||||||| |||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||    
T  54983966 aagaaaataacatggggcacctcacttagggtgccacgtcagcgtagaccaagccaaaattgacattgggtgccaaaactgacacatgtgcaaaatttag 54984065  T
Q  110 ggggcggtttt 120  Q
    |||||| ||||    
T  54984066 ggggcgatttt 54984076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 6207306 - 6207417
Alignment:
Q  9 gaagaaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaattta 108  Q
    |||||||| || ||| |||| ||||||||||||||||| | || ||||||||||||||||||||| ||||||||||||| || |||| |||||||| |||    
T  6207306 gaagaaaaaaagatgtgacatctcacttagagtgccacattagcgtagaccaagtcaaaattgaccttgggggccaaaattgccacaaatgcaaaactta 6207405  T
Q  109 gggggcggtttt 120  Q
    ||||||||||||    
T  6207406 gggggcggtttt 6207417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 44356534 - 44356641
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | |||||||||||||| ||||||||| |  |||||||||||||||||||   |||||||||||||||| ||||||||||||| |||||||    
T  44356534 aaaataacacgtgacacctcacttagggtgccacgttatcgtagaccaagtcaaaattggtcttgggggccaaaactgccacatatgcaaaacttagggg 44356633  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  44356634 gcggtttt 44356641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 20112300 - 20112393
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    ||||||||||||||||||||||||| || |||| ||||||||||| | |||||||||||||||| ||||||||||||| || ||||||||||||    
T  20112300 cacctcacttagagtgccacgtcagcgttgaccgagtcaaaattggctttgggggccaaaactgccacatatgcaaaactttgggggcggtttt 20112393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 51362702 - 51362610
Alignment:
Q  28 acctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    ||||||||||| |||||||||||||||||||  |||||||||||   |||||||||||||||| ||||||||||||| |||||||||||||||    
T  51362702 acctcacttagggtgccacgtcagtgtagactgagtcaaaattggtcttgggggccaaaactgccacatatgcaaaacttagggggcggtttt 51362610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 2654105 - 2654212
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||||| | | ||| |||||| |||||||||||| ||||||||||||||||||| | ||||||| |||||||| ||||||||||||| |||||||    
T  2654105 aaaataacatgtggctcctgacttagggtgccacgtcagcgtagaccaagtcaaaattggccttgggggtcaaaactgccacatatgcaaaacttagggg 2654204  T
Q  113 gcggtttt 120  Q
    || |||||    
T  2654205 gcagtttt 2654212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 2837077 - 2836970
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | |||||||||||| |||||||||||||||||||  ||||||||||| | |||||||||||||||  |||| |||||||| |||||||    
T  2837077 aaaataacacgtggcacctcacttagggtgccacgtcagtgtagactgagtcaaaattggccttgggggccaaaactctcacacatgcaaaacttagggg 2836978  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  2836977 gcggtttt 2836970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 2016954 - 2016862
Alignment:
Q  28 acctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    ||||||||||| |||||||||||| ||||||| ||||||||||| | |||||||||||||||| ||||| ||||||| ||||||||| |||||    
T  2016954 acctcacttagggtgccacgtcagcgtagaccgagtcaaaattggccttgggggccaaaactgccacatgtgcaaaacttagggggcagtttt 2016862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 6637199 - 6637306
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||||| | |||||||||||| |||||| ||||||||||||| ||||||||||| ||||| |||||||||||| || | |||||||| ||| |||    
T  6637199 aaaataacatgtggcacctcacttagggtgccatgtcagtgtagaccgagtcaaaattggcattgtgggccaaaactgccagaaatgcaaaacttaaggg 6637298  T
Q  113 gcggtttt 120  Q
    ||| ||||    
T  6637299 gcgatttt 6637306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 33 - 124
Target Start/End: Original strand, 8965672 - 8965763
Alignment:
Q  33 acttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggttttatag 124  Q
    |||||| ||||||| |||  ||||||| |||||||||||||||||||| ||||||||| |||| |||||||| |||||||||||||||||||    
T  8965672 acttagggtgccacatcaacgtagaccgagtcaaaattgacattggggaccaaaactgccacagatgcaaaacttagggggcggttttatag 8965763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 21597538 - 21597645
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | ||||||| |||| |||||||||||| ||||||| ||||||||||    |||||||||||||||| |||||||||||||||||||||    
T  21597538 aaaataacacgtggcacctcatttagggtgccacgtcagcgtagaccgagtcaaaattagttttgggggccaaaactgccacatatgcaaaatttagggg 21597637  T
Q  113 gcggtttt 120  Q
     |||||||    
T  21597638 acggtttt 21597645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 51371627 - 51371540
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggc 114  Q
    ||||||| |||| |||||||||||||||||||| ||||||||||||||||||||| |||||||| || |||||||||| ||| |||||    
T  51371627 cacctcatttagggtgccacgtcagtgtagaccgagtcaaaattgacattgggggtcaaaactgccatatatgcaaaacttaaggggc 51371540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 10059847 - 10059940
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||| |||||||||||  ||||||| ||||||||||| | ||| |||||||||||| |||| |||||||| |||||||||||||||    
T  10059847 cacctcacttagggtgccacgtcaacgtagaccgagtcaaaattggccttgagggccaaaactgccacagatgcaaaacttagggggcggtttt 10059940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 43074724 - 43074825
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | |||||||||||| |||||||||||| ||||||  ||||||||||| | |||||||||||||||| |||| |||||||| |||||||    
T  43074724 aaaataacacgtggcacctcacttagggtgccacgtcagcgtagactgagtcaaaattggccttgggggccaaaactgccacagatgcaaaacttagggg 43074823  T
Q  113 gc 114  Q
    ||    
T  43074824 gc 43074825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 53312451 - 53312358
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||| |||||||||||| ||||||  |||| |||||| | |||||||||||||||| ||||| |||||||||||||||| ||||||    
T  53312451 cacctcacttagggtgccacgtcagcgtagactgagtccaaattggccttgggggccaaaactgccacatgtgcaaaatttagggggtggtttt 53312358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 4796190 - 4796286
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggttttata 123  Q
    |||||||||||| |||||||||||| ||||||| ||||||||||||  |||||||||||||||| ||||  ||||||| |||  |||||||||||||    
T  4796190 cacctcacttagggtgccacgtcagcgtagaccgagtcaaaattgattttgggggccaaaactgccacaggtgcaaaacttaaagggcggttttata 4796286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 16292446 - 16292339
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacat-tgggggccaaaactgacacatatgcaaaatttaggg 111  Q
    ||||||||| | |||||||||||||| | |||||||||||||||||| |||||||||| |||| ||||||||||||||| ||||| ||||||| |||| |    
T  16292446 aaaataacacgtgacacctcacttagggggccacgtcagtgtagaccgagtcaaaatt-acatatgggggccaaaactgccacatgtgcaaaacttagag 16292348  T
Q  112 ggcggtttt 120  Q
    |||| ||||    
T  16292347 ggcgatttt 16292339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 14449420 - 14449527
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | |||||||||||  |||||||||||| ||| ||| ||||||||||| | |||||||||||||||| |||| |||||||| ||||||     
T  14449420 aaaataacacgtggcacctcacttatggtgccacgtcagcgtaaaccgagtcaaaattggccttgggggccaaaactgccacaaatgcaaaacttaggga 14449519  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  14449520 gcggtttt 14449527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 49185747 - 49185665
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacaca 95  Q
    ||||||||||| | |||||| ||||| |||||||||||| ||||||||||||||||||| | |||||||||||||||| ||||    
T  49185747 aaaataacatgtggcacctcgcttagggtgccacgtcagcgtagaccaagtcaaaattggccttgggggccaaaactgccaca 49185665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 12719581 - 12719688
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||||| | |||||||||| | ||||||| |||| ||||||| |||||||||||   |||| ||||||||||| |||| |||||||| |||||||    
T  12719581 aaaataacatgtggcacctcacttggggtgccacatcagcgtagaccgagtcaaaattggtcttggaggccaaaactgccacagatgcaaaacttagggg 12719680  T
Q  113 gcggtttt 120  Q
    | ||||||    
T  12719681 gtggtttt 12719688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 21322864 - 21322958
Alignment:
Q  30 ctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggttttatag 124  Q
    |||| |||||||| | ||| || ||||||| ||||||||||| ||||||||| |||||||| ||||||||||||| ||||| ||| |||||||||    
T  21322864 ctcatttagagtgtcgcgttagcgtagaccgagtcaaaattggcattgggggtcaaaactgtcacatatgcaaaacttaggaggcagttttatag 21322958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 1420694 - 1420787
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||| |||||||||||| || |||| ||||||||||| | ||||||| || ||||| |||| |||||||| ||| |||||||||||    
T  1420694 cacctcacttagggtgccacgtcagcgttgaccgagtcaaaattggccttgggggtcataactgccacaaatgcaaaacttatggggcggtttt 1420787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 31553392 - 31553485
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||| ||||| ||| || ||||||| ||||||||||| | |||||||||||||||| || | ||| ||||||||||||||| ||||    
T  31553392 cacctcacttagggtgccgcgttagcgtagaccgagtcaaaattggccttgggggccaaaactgccatagatgtaaaatttagggggcgatttt 31553485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 25909638 - 25909554
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggttttatag 124  Q
    |||||||||||| ||||||| ||||||||||| | ||||||||||||||   ||||  ||||||| |||||||||||||||||||    
T  25909638 gtgccacgtcagcgtagaccgagtcaaaattggccttgggggccaaaacctccacaagtgcaaaacttagggggcggttttatag 25909554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 8070803 - 8070708
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaattta 108  Q
    ||||||||| | | |||||||||| | |||||||||||| ||||||||||| ||||||||  | |||||||||||||| |||| || |||||||||    
T  8070803 aaaataacacgtggcacctcacttggggtgccacgtcagcgtagaccaagttaaaattgatctagggggccaaaactgccacagatacaaaattta 8070708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 21871523 - 21871630
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | |||||| ||||||||||| || ||||| ||||||| ||| ||||||||  |||||||||||||||  || | |||||||| ||||| |    
T  21871523 aaaataacacgtgacaccccacttagagtgtcatgtcagcgtagaccgagttaaaattgattttgggggccaaaactaccaaagatgcaaaacttaggag 21871622  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  21871623 gcggtttt 21871630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 21927384 - 21927491
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | |||||| ||||||||||| || ||||| ||||||| ||| ||||||||  |||||||||||||||  || | |||||||| ||||| |    
T  21927384 aaaataacacgtgacaccccacttagagtgtcatgtcagcgtagaccgagttaaaattgattttgggggccaaaactaccaaagatgcaaaacttaggag 21927483  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  21927484 gcggtttt 21927491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 29697699 - 29697593
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | |||||||||||||| |||||||||||| ||||||   |||||||||| | || ||  ||||||||| |||| |||||||| |||||||    
T  29697699 aaaataacacgtgacacctcacttagggtgccacgtcagcgtagactgggtcaaaattggcctt-ggaaccaaaactgccacagatgcaaaacttagggg 29697601  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  29697600 gcggtttt 29697593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 53924888 - 53924998
Alignment:
Q  14 aaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttaggggg 113  Q
    |||||||| | |||| ||||||||| ||| ||| |||  ||||||| ||||||||||||| ||| ||| |||||||| |||| |||||||| ||||||||    
T  53924888 aaataacacgtgacatctcacttagggtgtcacatcaacgtagaccgagtcaaaattgaccttgagggtcaaaactgtcacaaatgcaaaacttaggggg 53924987  T
Q  114 cggttttatag 124  Q
     | ||||||||    
T  53924988 agattttatag 53924998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 23759724 - 23759817
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||| ||||||||||||  |||| | ||||||||||| | |||| ||||||||||| |||| || ||||| ||||||| |||||||    
T  23759724 cacctcacttagggtgccacgtcagcttagatcgagtcaaaattggccttggaggccaaaactgtcacagatacaaaacttaggggacggtttt 23759817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 34567752 - 34567848
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttag 109  Q
    ||||||||| | | ||| |||||| | ||| ||||||||  | |||| |||| ||||||||||||||||||||||||| ||||||||||||| ||||    
T  34567752 aaaataacacgtggcacttcactttgggtgtcacgtcagcattgaccgagtcgaaattgacattgggggccaaaactgccacatatgcaaaacttag 34567848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 1571561 - 1571482
Alignment:
Q  25 gacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaa 104  Q
    |||||||||||||| ||||||||||||||||| || |||| ||||||   ||||  |||||||||| |||||||||||||    
T  1571561 gacacctcacttagggtgccacgtcagtgtaggccgagtctaaattggttttggaagccaaaactgccacatatgcaaaa 1571482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 51233644 - 51233582
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||||||||| |||||||||||| |||||||||||| |||||| | ||||||||||||||||    
T  51233644 cacctcacttagggtgccacgtcagcgtagaccaagtccaaattggc-ttgggggccaaaactg 51233582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 54855480 - 54855405
Alignment:
Q  14 aaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaact 89  Q
    |||||||| | | |||||||||||| |||||||||||| ||||||| ||||||||||| | |||||| ||||||||    
T  54855480 aaataacaagtggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggctttggggaccaaaact 54855405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 20118053 - 20118130
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaa 104  Q
    |||||||||||| |||||||||| | ||||| | | |||||||||   |||||||||||||||| |||||||||||||    
T  20118053 cacctcacttagggtgccacgtccgcgtagatcgaatcaaaattggtcttgggggccaaaactggcacatatgcaaaa 20118130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 27978842 - 27978778
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaa 104  Q
    |||||||||||| ||||||| ||||||||||| | ||||||| |||||||| |||| ||||||||    
T  27978842 gtgccacgtcagcgtagaccgagtcaaaattggccttgggggtcaaaactgccacaaatgcaaaa 27978778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 35393478 - 35393402
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaact 89  Q
    ||||||||||| | |||||||||||| ||||||| ||||  |||| |||||||||||||   |||||||||||||||    
T  35393478 aaaataacatgtggcacctcacttagggtgccacatcagcatagaacaagtcaaaattgggcttgggggccaaaact 35393402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 21451621 - 21451539
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagg 110  Q
    |||||||||||| ||| |||||||||||||||| ||||||||||  | || | ||||||||||| ||||  |||||||||||||    
T  21451621 cacctcacttagggtgtcacgtcagtgtagaccgagtcaaaattcgcctt-gtggccaaaactgccacaagtgcaaaatttagg 21451539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 50769541 - 50769442
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | ||||||||| || |||| ||||||| |||| || ||||||||||||| || ||||| ||||||| || | |||||||| |||||||    
T  50769541 aaaataacacgtggcacctcactcagggtgctacgtcagcgtaggccgagtcaaaattgaccttaggggctaaaactgccatagatgcaaaacttagggg 50769442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 52462927 - 52463026
Alignment:
Q  16 ataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcg 115  Q
    |||||| | |||||||||||| | ||| ||||||||||||||||  || |||||||   |||||||||||||||| || | |||||||| ||| ||||||    
T  52462927 ataacacgtgacacctcactttgggtgtcacgtcagtgtagaccgggttaaaattggttttgggggccaaaactgtcatagatgcaaaacttaaggggcg 52463026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 3658081 - 3658023
Alignment:
Q  62 gtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    ||||||||||||||| ||| ||||||||| |||| |||||||||||||| || ||||||    
T  3658081 gtcaaaattgacatttgggaccaaaactgtcacagatgcaaaatttaggaggtggtttt 3658023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 14016902 - 14016796
Alignment:
Q  14 aaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttaggggg 113  Q
    |||||||| | ||||||||| | || | ||||| ||||  |||||||||||||||||  | |||| ||||||||||| |||| || ||||| ||| ||||    
T  14016902 aaataacacgtgacacctcattaagggagccacatcagcctagaccaagtcaaaattagccttggaggccaaaactgccacaaatacaaaacttaagggg 14016803  T
Q  114 cggtttt 120  Q
    |||||||    
T  14016802 cggtttt 14016796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 11824351 - 11824267
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    |||||||||||| ||||||| |||| ||||||  ||||||||||| | || ||| ||||||||| |||| |||||||| |||||||    
T  11824351 cacctcacttagggtgccacatcagcgtagactgagtcaaaattggcctt-gggaccaaaactgccacacatgcaaaacttagggg 11824267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 28291817 - 28291866
Alignment:
Q  41 tgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||| |||| | ||||||||||||||||||| ||||||||||||||||    
T  28291817 tgccacatcagcgaagaccaagtcaaaattgaccttgggggccaaaactg 28291866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 47999693 - 47999600
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||  |||||||||||| ||||||| | ||||||||| | || |||| |||||||| |||| ||| |||| ||| || ||||||||    
T  47999693 cacctcacttaaggtgccacgtcagcgtagaccgaatcaaaattggccttaggggtcaaaactgccacagatgtaaaacttatggagcggtttt 47999600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 35383909 - 35383972
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||||||||  |||||||||||  ||||||| | ||||||||| | ||||||||||||||||    
T  35383909 cacctcacttacggtgccacgtcaacgtagaccgaatcaaaattggccttgggggccaaaactg 35383972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 2016406 - 2016356
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||||||||| | |||| ||||||||| || ||||||||||||||||||    
T  2016406 gtgccacgtcagcgaagactaagtcaaaagtggcattgggggccaaaactg 2016356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 6289344 - 6289294
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||||||||| | |||| ||||||||| || ||||||||||||||||||    
T  6289344 gtgccacgtcagcgaagactaagtcaaaagtggcattgggggccaaaactg 6289294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 9119552 - 9119502
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||||||||| | |||| ||||||||| || ||||||||||||||||||    
T  9119552 gtgccacgtcagcgaagactaagtcaaaagtggcattgggggccaaaactg 9119502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 10308527 - 10308576
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||||||||||| |||| || |||||| |||||||||||||||||||||    
T  10308527 gtgccacgtcagtgaagactaa-tcaaaagtgacattgggggccaaaactg 10308576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 40489361 - 40489311
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||||||||| | |||| ||||||||| || ||||||||||||||||||    
T  40489361 gtgccacgtcagcgaagactaagtcaaaagtggcattgggggccaaaactg 40489311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 55732704 - 55732639
Alignment:
Q  55 agaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    ||||||||||||||||| | |||||||||||||||| || |||| ||| |  |||||||| |||||    
T  55732704 agaccaagtcaaaattggccttgggggccaaaactgccaaatatccaatacatagggggctgtttt 55732639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 42526099 - 42526155
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaat 69  Q
    ||||||||| | | |||||||||||| ||| |||||||||||||||  |||||||||    
T  42526099 aaaataacacgtggcacctcacttagggtgtcacgtcagtgtagactgagtcaaaat 42526155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 39)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 2974811 - 2974704
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||| ||||| | |||||||||||| |||||||||||| ||||||| ||||||||||| |||||||||||||||||| |||| |||||||| |||||||    
T  2974811 aaaattacatgtggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggcattgggggccaaaactgccacagatgcaaaacttagggg 2974712  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  2974711 gcggtttt 2974704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 25910901 - 25910794
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||||| |||||||||||||| |||||||||||| ||||||| ||||||||||||| |||||||||||||||| ||||  |||||||||||| ||    
T  25910901 aaaataacatgtgacacctcacttagggtgccacgtcagcgtagaccgagtcaaaattgaccttgggggccaaaactgccacaggtgcaaaatttagagg 25910802  T
Q  113 gcggtttt 120  Q
    | ||||||    
T  25910801 gtggtttt 25910794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 3333851 - 3333944
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||| |||||||||||| ||||||| ||||||||||||| |||||||||||||||| ||||||||||||| ||| || ||||||||    
T  3333851 cacctcacttagggtgccacgtcagcgtagaccgagtcaaaattgaccttgggggccaaaactgccacatatgcaaaacttatggagcggtttt 3333944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 36798348 - 36798242
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||| |||| ||||||   |||||||||||||||| |||| |||||||| |||||||    
T  36798348 aaaataacatgtggcacctcacttagagtgccacgtcagtgtagaccgagtc-aaattggtcttgggggccaaaactgccacagatgcaaaacttagggg 36798250  T
Q  113 gcggtttt 120  Q
    | ||||||    
T  36798249 gtggtttt 36798242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 3999234 - 3999344
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||||| | |||||||||||  |||||||||||| ||||||||||||||||||| | |||||||||||||||| |||||||| |||| |||||      
T  3999234 aaaataacatgtggcacctcacttaaggtgccacgtcagcgtagaccaagtcaaaattggccttgggggccaaaactgccacatatgtaaaacttaggat 3999333  T
Q  113 gcggttttata 123  Q
     ||||||||||    
T  3999334 acggttttata 3999344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 34320083 - 34320185
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    |||||||||||   |||| |||| || |||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||| |||| |||||||    
T  34320083 aaaataacatgtagcaccccactaagggtgccacgtcagtgtagaccaagtcaaaattgactttgggggccaaaactgccacaaatgtaaaacttagggg 34320182  T
Q  113 gcg 115  Q
    |||    
T  34320183 gcg 34320185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 9852964 - 9852857
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | |||||||||||| |||||||||||| ||||| ||||||||||||| | ||||| |||||||||| |||| |||||||| |||||||    
T  9852964 aaaataacacgtggcacctcacttagggtgccacgtcagcgtagatcaagtcaaaattggccttgggagccaaaactgccacagatgcaaaacttagggg 9852865  T
Q  113 gcggtttt 120  Q
    ||| ||||    
T  9852864 gcgatttt 9852857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 12406176 - 12406283
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | |||||||||||| |||||||||||| ||||||  ||||||||||| | |||||||||||||||| |||| ||| |||| |||||||    
T  12406176 aaaataacacgtggcacctcacttagggtgccacgtcagcgtagactgagtcaaaattggccttgggggccaaaactgccacagatgtaaaacttagggg 12406275  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  12406276 gcggtttt 12406283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 31080654 - 31080547
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | |||||||||||| ||||||||||||  |||||| ||| ||||||| | |||||||||||||||| |||| |||||||| |||||||    
T  31080654 aaaataacacgtggcacctcacttagggtgccacgtcagcatagaccgagttaaaattggccttgggggccaaaactgccacagatgcaaaacttagggg 31080555  T
Q  113 gcggtttt 120  Q
    | ||||||    
T  31080554 gtggtttt 31080547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 27904620 - 27904726
Alignment:
Q  14 aaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttaggggg 113  Q
    |||||||| | | |||||||||||| |||||||||||| ||||||| |||||||||||   ||||||| |||||||| ||||  ||||||| ||||||||    
T  27904620 aaataacacgtggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggtcttgggggacaaaactgccacaagtgcaaaacttaggggg 27904719  T
Q  114 cggtttt 120  Q
    |||||||    
T  27904720 cggtttt 27904726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 35166471 - 35166366
Alignment:
Q  15 aataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggc 114  Q
    ||||||||| | |||||||||||| ||| || ||||| ||||||| |||||||||||||||||  ||||||||| | ||||| ||||||| |||||||||    
T  35166471 aataacatgtggcacctcacttagggtgtcatgtcagcgtagaccgagtcaaaattgacattgaaggccaaaaccgccacatgtgcaaaacttagggggc 35166372  T
Q  115 ggtttt 120  Q
    | ||||    
T  35166371 gatttt 35166366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 19131663 - 19131743
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||| ||||||| ||||||||||| | || ||||||||||||| |||| |||||||| |||||||||||||||    
T  19131663 gtgccacgtcagcgtagaccgagtcaaaattggccttcggggccaaaactgtcacagatgcaaaacttagggggcggtttt 19131743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 32391855 - 32391962
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||||| | |||||||||||| |||||||||||| ||||||| |||||||||||   ||||  | |||||||| |||| |||||||| ||| |||    
T  32391855 aaaataacatgtggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggtcttggatgtcaaaactgtcacacatgcaaaacttaaggg 32391954  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  32391955 gcggtttt 32391962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 20629880 - 20629987
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | |||||||||||| |||||||||||| ||||| | |||||||||||    ||| ||||||||||  |||| |||||||| |||||||    
T  20629880 aaaataacacgtggcacctcacttagggtgccacgtcagcgtagatcgagtcaaaattggtcctggaggccaaaacttccacaaatgcaaaacttagggg 20629979  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  20629980 gcggtttt 20629987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 26702613 - 26702507
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | |||||||||||| ||||||||||||  |||||| | |||||||||   |||||||||||||||| |||| |||||||| || ||||    
T  26702613 aaaataacacgtggcacctcacttagggtgccacgtcaggatagaccgaatcaaaattggtcttgggggccaaaactgccacaaatgcaaaactt-gggg 26702515  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  26702514 gcggtttt 26702507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 26972346 - 26972240
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | |||||||||||| ||||||||||||  |||||| | |||||||||   |||||||||||||||| |||| |||||||| || ||||    
T  26972346 aaaataacacgtggcacctcacttagggtgccacgtcaggatagaccgaatcaaaattggtcttgggggccaaaactgccacaaatgcaaaactt-gggg 26972248  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  26972247 gcggtttt 26972240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 40276165 - 40276272
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    |||| |||||| | |||||||||||| ||| |||||||| |||||||  |||||||||  | ||||||| ||||| || ||||||||||||| |||||||    
T  40276165 aaaaaaacatgtggcacctcacttagggtgtcacgtcagcgtagaccgggtcaaaattagccttgggggtcaaaattgccacatatgcaaaacttagggg 40276264  T
Q  113 gcggtttt 120  Q
     |||||||    
T  40276265 acggtttt 40276272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 16132908 - 16132815
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    ||||||||||||  |||||| |||| |||||| |||||||||||| | |||||| ||||||||| || |  ||||||| |||||||||||||||    
T  16132908 cacctcacttaggatgccacatcagcgtagacaaagtcaaaattggccttggggaccaaaactgccataggtgcaaaacttagggggcggtttt 16132815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 43098163 - 43098240
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    ||||||||| | | |||||||||||| |||||||||||| ||||||  |||||||||||| || ||||||||||||||    
T  43098163 aaaataacacgcggcacctcacttagggtgccacgtcagcgtagactgagtcaaaattgatatcgggggccaaaactg 43098240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 22300778 - 22300671
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||||| | |||||||||||| |||||||||||  ||||||| |||||||||||   ||||  | |||||||| ||||||| ||||| ||| |||    
T  22300778 aaaataacatgtggcacctcacttagggtgccacgtcaacgtagaccgagtcaaaattggtcttggaagtcaaaactgccacatatacaaaacttaaggg 22300679  T
Q  113 gcggtttt 120  Q
     |||||||    
T  22300678 acggtttt 22300671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 20512377 - 20512267
Alignment:
Q  10 aagaaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttag 109  Q
    |||||||||||| | | |||||||||||| |||||| || || ||||||| |||||||||||   ||||||| |||||||  ||||  ||||||| ||||    
T  20512377 aagaaaataacacgtggcacctcacttagggtgccatgttagcgtagaccgagtcaaaattggtcttgggggtcaaaactaccacaggtgcaaaacttag 20512278  T
Q  110 ggggcggtttt 120  Q
    ||||| |||||    
T  20512277 ggggcagtttt 20512267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 26563152 - 26563075
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaa 104  Q
    |||||||| ||| |||||||||||| | | ||| ||||||||||||| ||||||||||||| || |||| ||||||||    
T  26563152 cacctcacgtagggtgccacgtcagcggaaaccgagtcaaaattgaccttgggggccaaaattgccacagatgcaaaa 26563075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 25363991 - 25363904
Alignment:
Q  25 gacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| |||| ||| |||||||| ||||||| | ||||||||||| || ||||||||||||  ||||  ||||||| |||||||    
T  25363991 gacacctcatttagggtgtcacgtcagcgtagaccgaatcaaaattgacttttggggccaaaactaccacaattgcaaaacttagggg 25363904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 30604223 - 30604330
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    |||||||||  || |||||||||||| |||||||||||| ||||||  ||||||||||| | |   ||  |||||||| ||||  ||||||| |||||||    
T  30604223 aaaataacactgggcacctcacttagggtgccacgtcagcgtagacagagtcaaaattggcctacaggtgcaaaactgccacaggtgcaaaacttagggg 30604322  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  30604323 gcggtttt 30604330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 37897870 - 37897953
Alignment:
Q  29 cctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    |||||||||  |||| |||||||  |||||| |||||||||||   |||| ||||||||||| ||||||||||||| |||||||    
T  37897870 cctcacttaaggtgctacgtcagcatagaccgagtcaaaattggtcttggaggccaaaactgccacatatgcaaaacttagggg 37897953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 124
Target Start/End: Complemental strand, 39574416 - 39574305
Alignment:
Q  10 aagaaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttag 109  Q
    |||||||||||||| | ||| |||||||  ||| |||||||| ||||||| |||| ||||||   |||||||||||||||| |||  |||||||| ||||    
T  39574416 aagaaaataacatgtggcacgtcacttatggtgtcacgtcagcgtagaccgagtc-aaattggtcttgggggccaaaactgccac--atgcaaaacttag 39574320  T
Q  110 ggggcggttttatag 124  Q
    |||| | ||||||||    
T  39574319 ggggtgattttatag 39574305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 9852973 - 9853027
Alignment:
Q  65 aaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggttt 119  Q
    ||||||||| ||||||||||||||||| |||  ||||||| ||||||||||||||    
T  9852973 aaaattgactttgggggccaaaactgatacagttgcaaaacttagggggcggttt 9853027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 18403152 - 18403066
Alignment:
Q  25 gacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttaggg 111  Q
    |||||||||||||| |||||||||||  ||||||  |||||||||||   ||||||| |||||||| || | |||||||| ||||||    
T  18403152 gacacctcacttagggtgccacgtcaacgtagactgagtcaaaattggtcttgggggtcaaaactgccagagatgcaaaacttaggg 18403066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 6130394 - 6130470
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    ||||||||||| | |||||||||||| ||| |||||||   |||||| ||||||||||||| || |||||||||||||    
T  6130394 aaaataacatgtggcacctcacttagggtgtcacgtcaacatagaccgagtcaaaattgacctt-ggggccaaaactg 6130470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 19340900 - 19340997
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagg 110  Q
    ||||||||| | | ||||||| |||| |||||||||||  || |||| ||||||||||| | |||||| | ||||||| |||| |||||||| |||||    
T  19340900 aaaataacacgtggcacctcatttagggtgccacgtcaacgttgaccgagtcaaaattggctttggggactaaaactgccacagatgcaaaacttagg 19340997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 40133072 - 40133143
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    |||||||||||| |||||||  |||||||||| |||| ||||||||||||| |||| ||| |||| |||||||    
T  40133072 gtgccacgtcagggtagaccgggtcaaaattggcatt-ggggccaaaactgtcacaaatgtaaaacttagggg 40133143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 10332107 - 10332057
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||||||||| | |||| ||||||||| || ||||||||||||||||||    
T  10332107 gtgccacgtcagcgaagactaagtcaaaagtggcattgggggccaaaactg 10332057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 24779451 - 24779393
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattg 71  Q
    ||||||||| | |||| ||||||| | |||||||||||| ||||||| |||||||||||    
T  24779451 aaaataacacgtgacaactcacttggggtgccacgtcagcgtagaccgagtcaaaattg 24779393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 28446181 - 28446091
Alignment:
Q  14 aaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaa 104  Q
    |||||||| | |||||||||| ||| ||| || ||||| ||| ||| ||||||||||| | || ||||||||| ||| |||| ||||||||    
T  28446181 aaataacacgtgacacctcacgtagggtgtcaggtcagcgtataccgagtcaaaattggccttaggggccaaagctgtcacaaatgcaaaa 28446091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 39049168 - 39049118
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    ||||||| |||| | |||||||| |||||||||| ||||||||||||||||    
T  39049168 gtgccacatcagcgaagaccaagccaaaattgaccttgggggccaaaactg 39049118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 2710484 - 2710525
Alignment:
Q  25 gacacctcacttagagtgccacgtcagtgtagaccaagtcaa 66  Q
    |||||||||||||| |||||||||||| || |||||||||||    
T  2710484 gacacctcacttagggtgccacgtcagcgttgaccaagtcaa 2710525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 4146300 - 4146353
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgaca 93  Q
    |||||||||||| | |||| ||||||||| || | |||||||||||||||||||    
T  4146300 gtgccacgtcagcgaagactaagtcaaaagtggccttgggggccaaaactgaca 4146353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 12881819 - 12881766
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgaca 93  Q
    |||||||||||| | | || ||||||||| |||||||| |||||||||||||||    
T  12881819 gtgccacgtcagcgaaaactaagtcaaaagtgacattgagggccaaaactgaca 12881766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 15526846 - 15526886
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaa 67  Q
    |||||||||||| |||||||||||| || ||||||||||||    
T  15526846 cacctcacttagggtgccacgtcagcgttgaccaagtcaaa 15526886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 15107128 - 15107235
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||||| | |||||||||||| ||||||| |||||||||||| ||||||||||| |||||| ||||||||||| |||| |||||||| ||||||     
T  15107128 aaaataacatgtggcacctcacttagggtgccacatcagtgtagaccgagtcaaaattggcattggaggccaaaactgccacaaatgcaaaacttaggga 15107227  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  15107228 gcggtttt 15107235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 36580423 - 36580518
Alignment:
Q  25 gacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    ||||||||| |||| |||||||||||| ||||||| ||||||||||||| |||||||||||||||| |||| |||||||| |||||||||||||||    
T  36580423 gacacctcatttagggtgccacgtcagcgtagaccgagtcaaaattgactttgggggccaaaactgccacaaatgcaaaacttagggggcggtttt 36580518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 17931880 - 17931973
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||| |||||||||||| |||||| ||||||||||||| ||| ||| |||||||||||||| ||||||||||||| ||||| ||||    
T  17931880 cacctcacttagggtgccacgtcagcgtagacaaagtcaaaattgatatttgggaccaaaactgacacagatgcaaaatttagagggcgatttt 17931973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 20185094 - 20184988
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | |||||||||||||| |||| || |||| ||||||| ||||||||||||| |||||||||||||||| ||||||||||||| ||| | |    
T  20185094 aaaataacacgcgacacctcacttag-gtgctacatcagcgtagaccgagtcaaaattgaccttgggggccaaaactggcacatatgcaaaacttaagag 20184996  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  20184995 gcggtttt 20184988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 35250296 - 35250185
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | |||||||||||  |||||||||||||||||||| ||||||||||| | |||||| ||||||||| || | |||||||| |||| ||    
T  35250296 aaaataacacgtggcacctcacttaaggtgccacgtcagtgtagaccgagtcaaaattggccttggggtccaaaactgtcaaagatgcaaaacttagagg 35250197  T
Q  113 gcggttttatag 124  Q
    ||||||||||||    
T  35250196 gcggttttatag 35250185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 18504406 - 18504314
Alignment:
Q  28 acctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    ||||||||||| |||||||||||| ||||||  ||||||||||| | || | ||||||||||| ||||||||||||| |||||||||||||||    
T  18504406 acctcacttagggtgccacgtcagcgtagactgagtcaaaattggccttagaggccaaaactgccacatatgcaaaacttagggggcggtttt 18504314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 8074038 - 8073961
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaa 104  Q
    ||||||||||||||||||||||||| | ||||| | ||||||||| | |||||||||||||||| |||||||||||||    
T  8074038 cacctcacttagagtgccacgtcagcgaagaccgaatcaaaattggccttgggggccaaaactgccacatatgcaaaa 8073961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 36903440 - 36903341
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||||| | |||||||||||| |||||| ||||| ||||||| ||||||||||| | ||| |||||||||||| |||| ||| |||| |||||||    
T  36903440 aaaataacatgtggcacctcacttagggtgccatgtcagcgtagaccgagtcaaaattggccttgagggccaaaactgccacagatggaaaacttagggg 36903341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 112
Target Start/End: Complemental strand, 15348131 - 15348029
Alignment:
Q  10 aagaaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttag 109  Q
    |||||| ||||||| |  ||||||||||| ||||||| |||| ||||||| ||||||||||||| |||||||||| ||||  |||| |||||||| ||||    
T  15348131 aagaaattaacatgtggaacctcacttagggtgccacatcagcgtagaccgagtcaaaattgaccttgggggccataacttccacagatgcaaaacttag 15348032  T
Q  110 ggg 112  Q
    |||    
T  15348031 ggg 15348029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 18186601 - 18186698
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggttttatag 124  Q
    |||||||||||| |||||||||||  ||||||  ||||||||||| | |||||| ||||||||| |||| |||||||| ||| ||| |||||||||||    
T  18186601 cacctcacttagggtgccacgtcaacgtagactgagtcaaaattggccttggggaccaaaactgccacagatgcaaaacttaagggacggttttatag 18186698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 15029191 - 15029132
Alignment:
Q  61 agtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    ||||||||||||| |||||||||||||||| ||||| ||||||| |||||||||||||||    
T  15029191 agtcaaaattgaccttgggggccaaaactgccacatgtgcaaaacttagggggcggtttt 15029132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 29834287 - 29834394
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||||| | |||||||||||| ||| |||||||| || |||| |||| |||||||| |||||||  |||| || ||||  ||||||| |||||||    
T  29834287 aaaataacatgtggcacctcacttagggtgtcacgtcagcgtggaccgagtctaaattgaccttgggggagaaaattgtcacaggtgcaaaacttagggg 29834386  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  29834387 gcggtttt 29834394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 41243808 - 41243721
Alignment:
Q  25 gacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    |||||||||||||| |||||||||||  ||||||| ||||||||||| | |||||| | ||||||| |||| |||||||| |||||||    
T  41243808 gacacctcacttagggtgccacgtcaacgtagaccgagtcaaaattggccttggggacaaaaactgccacaaatgcaaaacttagggg 41243721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 28785891 - 28785998
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | |||||||||||| ||| |||||||| ||||||| ||||||||||  | ||||||| |||||||| || | |||||||| ||| |||    
T  28785891 aaaataacacgtggcacctcacttagggtgtcacgtcagcgtagaccgagtcaaaattagccttgggggtcaaaactgccataaatgcaaaacttatggg 28785990  T
Q  113 gcggtttt 120  Q
    || |||||    
T  28785991 gcagtttt 28785998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 6726405 - 6726490
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttaggggg 113  Q
    |||||||||||| |||||||||||| ||| ||  ||||||||||| | ||||||| |||||||| ||||| ||||||| ||||||||    
T  6726405 cacctcacttagggtgccacgtcagcgtaaactgagtcaaaattgtccttggggg-caaaactgccacatgtgcaaaacttaggggg 6726490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 120
Target Start/End: Complemental strand, 3382004 - 3381933
Alignment:
Q  48 tcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||| ||| ||| |||||||||| || |||||| ||||||||| ||||||||||||| |||||||||||||||    
T  3382004 tcagcgtacaccgagtcaaaattaaccttgggg-ccaaaactgccacatatgcaaaacttagggggcggtttt 3381933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 4049873 - 4049797
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaa 103  Q
    |||||||||||| |||||||||||| ||||| | ||||||||||| | ||| ||| |||||||| |||| |||||||    
T  4049873 cacctcacttagggtgccacgtcagcgtagatcgagtcaaaattggccttgagggtcaaaactgccacagatgcaaa 4049797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 23826166 - 23826102
Alignment:
Q  44 cacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaattta 108  Q
    |||||||| ||||||| | ||||||||||  |||||||||||||||| |||| ||||||||||||    
T  23826166 cacgtcagcgtagaccgaatcaaaattgatcttgggggccaaaactgccacaaatgcaaaattta 23826102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 120
Target Start/End: Complemental strand, 28350269 - 28350187
Alignment:
Q  38 gagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    ||||||||| |||| ||||| | |||||||||||   |||||||||||||||| ||||   |||||| |||||||||||||||    
T  28350269 gagtgccacatcagcgtagatcgagtcaaaattggtcttgggggccaaaactgccacaggggcaaaacttagggggcggtttt 28350187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 17876316 - 17876240
Alignment:
Q  44 cacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    ||||||||  |||| | ||||||||||| | |||| ||||||||| | |||| |||||||||||||||||| |||||    
T  17876316 cacgtcagcatagatcgagtcaaaattggccttggaggccaaaaccgccacagatgcaaaatttagggggcagtttt 17876240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 114
Target Start/End: Complemental strand, 20505226 - 20505147
Alignment:
Q  35 ttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggc 114  Q
    |||| |||||||||||| ||||||| ||||||||||||| |||| | | ||||| | | || |||||||| |||||||||    
T  20505226 ttagggtgccacgtcagcgtagaccgagtcaaaattgaccttggagtctaaaaccgtcgcagatgcaaaacttagggggc 20505147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 23746068 - 23745968
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||||| |||||||||||||  || ||||||||| ||||||| ||||||| | | |  | |||||||| |||| |||| |||||||| || ||||    
T  23746068 aaaataacatgtgacacctcacttacggtaccacgtcagcgtagaccgagtcaaagtggcc--ttggggccaacactgtcacaaatgcaaaactttgggg 23745971  T
Q  113 gcg 115  Q
    |||    
T  23745970 gcg 23745968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 38974603 - 38974650
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaa 87  Q
    |||||||||||| | |||| ||||||||| ||||||||||||||||||    
T  38974603 gtgccacgtcagcgaagactaagtcaaaagtgacattgggggccaaaa 38974650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 36801763 - 36801813
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||||||||| | |||| ||||||||| |||||||||||| ||||||||    
T  36801763 gtgccacgtcagcgaagactaagtcaaaagtgacattgggggtcaaaactg 36801813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 784773 - 784822
Alignment:
Q  41 tgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||| ||| || ||||||||||||||||| | ||||||||||||||||    
T  784773 tgccacatcactgaagaccaagtcaaaattggccttgggggccaaaactg 784822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 45718045 - 45717980
Alignment:
Q  44 cacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttag 109  Q
    |||||||  ||||||| ||||||||||||  || |||| ||||||||||||| |||||||| ||||    
T  45718045 cacgtcaacgtagaccgagtcaaaattgatcttaggggtcaaaactgacacagatgcaaaacttag 45717980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 47350991 - 47351044
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgaca 93  Q
    |||||||||||| | |||| ||||||||| || ||||||||| |||||||||||    
T  47350991 gtgccacgtcagcgaagactaagtcaaaagtggcattgggggtcaaaactgaca 47351044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 47909837 - 47909764
Alignment:
Q  47 gtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    ||||| ||||||| ||||||||||||| |||   ||||||| || |||| |||||||| |||||||||| ||||    
T  47909837 gtcagcgtagaccgagtcaaaattgaccttgaaagccaaaattgccacagatgcaaaacttagggggcgatttt 47909764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 9500080 - 9500144
Alignment:
Q  56 gaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||||||| | |||||||||||||||  ||||    ||||| |||||||||||||||    
T  9500080 gaccaagtcaaaattggccttgggggccaaaactaccacaaggtcaaaacttagggggcggtttt 9500144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 123
Target Start/End: Original strand, 13889623 - 13889710
Alignment:
Q  35 ttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggttttata 123  Q
    |||| ||||||  |||| |||||| |||||||||||| || ||||  ||||||||| |||| |||||||| ||| || |||||||||||    
T  13889623 ttagggtgccatatcagcgtagactaagtcaaaattggcactggga-ccaaaactgccacaaatgcaaaacttaaggagcggttttata 13889710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 21505757 - 21505860
Alignment:
Q  16 ataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcg 115  Q
    |||||| | |||||||||||||| ||| |||||||  ||||||  |||||||| || | ||||| |||||||||| || |||||||||   ||||||||     
T  21505757 ataacacgtgacacctcacttagggtgtcacgtcaacgtagactgagtcaaaa-tggccttgggagccaaaactgccatatatgcaaagcatagggggca 21505855  T
Q  116 gtttt 120  Q
    |||||    
T  21505856 gtttt 21505860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 40872317 - 40872357
Alignment:
Q  28 acctcacttagagtgccacgtcagtgtagaccaagtcaaaa 68  Q
    ||||||||||| |||||||||||| ||||||| ||||||||    
T  40872317 acctcacttagggtgccacgtcagcgtagaccgagtcaaaa 40872357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 48)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 44436534 - 44436641
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | |||||||||||| |||||||||||| ||||||| ||||||||||| | |||||||||||||||| |||| |||||||| |||||||    
T  44436534 aaaataacacgtggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggccttgggggccaaaactgccacagatgcaaaacttagggg 44436633  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  44436634 gcggtttt 44436641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 54719147 - 54719240
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||| |||||||||||| ||||||| ||||||||||| |||||||||||||| |||  |||||||||||| |||||||||||||||    
T  54719147 cacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggcattgggggccaaacctggtacatatgcaaaacttagggggcggtttt 54719240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 51315634 - 51315727
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||| |||||||||||| ||||||| ||||||||||| | |||||||||||||||| ||||  ||||||| |||||||||||||||    
T  51315634 cacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggccttgggggccaaaactgccacaggtgcaaaacttagggggcggtttt 51315727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 3916607 - 3916511
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttag 109  Q
    ||||||||| | | |||||||||||| ||||||||| |||||||||| ||||||||||||| |||||||||||||||| |||| |||||||| ||||    
T  3916607 aaaataacacgtggcacctcacttagggtgccacgttagtgtagaccgagtcaaaattgactttgggggccaaaactgccacagatgcaaaacttag 3916511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 35359156 - 35359064
Alignment:
Q  31 tcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggttttata 123  Q
    |||||||  |||||||||||| ||||||| |||||||||||||||| ||||||||||||| ||||| ||||||| |||||||||| |||||||    
T  35359156 tcacttaaggtgccacgtcagcgtagaccgagtcaaaattgacattaggggccaaaactgccacatgtgcaaaaattagggggcgattttata 35359064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 44433201 - 44433307
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | ||||||| |||||| ||||||| |||| |||||||  |||||||||| | |||||||||||||||| ||||||||||||| |||||||    
T  44433201 aaaataacacgtgacacctaacttag-gtgccacatcagcgtagaccgggtcaaaattggccttgggggccaaaactgccacatatgcaaaacttagggg 44433299  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  44433300 gcggtttt 44433307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 44585936 - 44586029
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||| |||||||||||| ||||||| ||||||||||| |  ||||||||||||||| |||| | |||||| |||||||||||||||    
T  44585936 cacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggccgtgggggccaaaactgccacagaagcaaaacttagggggcggtttt 44586029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 14856692 - 14856791
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | ||| |||||||  ||| |||||||| ||||||| | |||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  14856692 aaaataacacgtggcacatcacttaaggtgtcacgtcagcgtagaccgaatcaaaattgacattgggggccaaaactggcacatgtgcaaaatttagggg 14856791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 33329753 - 33329860
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | |||||||||||| |||||||||||| ||||||| |||||||||||   |||||||||||||||| |||| |||||| | |||||||    
T  33329753 aaaataacacgtggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggtcttgggggccaaaactgccacaaatgcaatacttagggg 33329852  T
Q  113 gcggtttt 120  Q
     |||||||    
T  33329853 acggtttt 33329860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 27178288 - 27178390
Alignment:
Q  18 aacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggt 117  Q
    |||||| |||||||||| ||| ||| ||| |||| ||||||||||||||||||| ||||||||| |||||||  |||| |||||||| |||||||| |||    
T  27178288 aacatgtgacacctcacgtagggtgacacatcagcgtagaccaagtcaaaattggcattgggggtcaaaactaccacagatgcaaaacttagggggtggt 27178387  T
Q  118 ttt 120  Q
    |||    
T  27178388 ttt 27178390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 43747430 - 43747523
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    ||||||||||||  ||||||||||| ||||||| ||||||||||||   ||||||||||||||| || | |||||||| |||||||||||||||    
T  43747430 cacctcacttaggatgccacgtcagcgtagaccgagtcaaaattgatcgtgggggccaaaactgccataaatgcaaaacttagggggcggtttt 43747523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 1938482 - 1938387
Alignment:
Q  25 gacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||||| |||||| ||||| ||||||| ||||||||||||| ||| |||||||||||  ||||  ||||||| ||| |||||||||||    
T  1938482 gacacctcacttagggtgccatgtcagcgtagaccgagtcaaaattgactttgtgggccaaaactaccacaggtgcaaaacttaaggggcggtttt 1938387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 47189730 - 47189837
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | |||||||||||||  ||| ||||||||||||||| |||||||||||||  ||| ||| |||||||| |||| |||||||| ||| ||     
T  47189730 aaaataacacgtgacacctcacttaaggtgtcacgtcagtgtagacgaagtcaaaattgatcttgagggtcaaaactgccacaaatgcaaaacttatgga 47189829  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  47189830 gcggtttt 47189837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 54464324 - 54464241
Alignment:
Q  29 cctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    |||||||||  ||||||||| || ||||||| ||||||||||||| ||||||| |||||||| ||||||||||||| |||||||    
T  54464324 cctcacttaaggtgccacgtgagcgtagaccgagtcaaaattgaccttgggggtcaaaactgccacatatgcaaaacttagggg 54464241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 791477 - 791562
Alignment:
Q  34 cttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggttt 119  Q
    ||||| |||||||||||| ||||| |||||| |||||||||||| ||||||||| || |||| |||||||| ||| ||||||||||    
T  791477 cttagggtgccacgtcagcgtagatcaagtcgaaattgacattgagggccaaaagtgtcacagatgcaaaacttatggggcggttt 791562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 28204622 - 28204723
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | ||||||||| ||||  ||||||||||||||||||| ||||||||||| |||||| ||||||||||  |||| || ||||| ||| |||    
T  28204622 aaaataacacgtgacacctcaattaggatgccacgtcagtgtagaccgagtcaaaattggcattggaggccaaaactaccacaaatacaaaacttaaggg 28204721  T
Q  113 gc 114  Q
    ||    
T  28204722 gc 28204723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 28712618 - 28712525
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||| |||||||||||||||||||| ||||||| ||| | ||||| || |||||||  ||| |||||||| |||||||||| ||||    
T  28712618 cacctcacttagggtgccacgtcagtgtagaccgagtcaaagttggccttgggtgctaaaactgctacagatgcaaaacttagggggcgatttt 28712525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 36687741 - 36687817
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaa 103  Q
    |||||||||||| |||||||||||| ||| ||| |||||||||||||||||| |||||||| || |||| |||||||    
T  36687741 cacctcacttagggtgccacgtcagcgtaaaccgagtcaaaattgacattggaggccaaaattgccacaaatgcaaa 36687817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 19404530 - 19404621
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaa 104  Q
    ||||||||| | | |||||||||||| ||| ||||| || |||||| |||||||||||| | |||||||||||||||| ||||| |||||||    
T  19404530 aaaataacacgtggcacctcacttagggtgtcacgttagcgtagactaagtcaaaattggccttgggggccaaaactgtcacatgtgcaaaa 19404621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 20432320 - 20432411
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaa 104  Q
    ||||||||| | | |||||||||||| |||| ||||||| ||||||||||||||||||| | ||||||| |||||||| |||| ||| ||||    
T  20432320 aaaataacacgtggcacctcacttagggtgctacgtcagcgtagaccaagtcaaaattgtccttgggggtcaaaactgccacagatgtaaaa 20432411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 38177349 - 38177263
Alignment:
Q  18 aacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaa 104  Q
    |||||| | |||||||||||| |||||||||||| | | ||| ||||||||||| | ||||||||||||| || |||||||||||||    
T  38177349 aacatgtggcacctcacttagggtgccacgtcagcgcaaaccgagtcaaaattggccttgggggccaaaaatgtcacatatgcaaaa 38177263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 7218287 - 7218384
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagg 110  Q
    ||||||||| | | |||||||||||  ||| ||||||||  |||| ||||||||||||||| |||||||||||||||| |||| ||| |||| |||||    
T  7218287 aaaataacacgtggcacctcacttaaggtgtcacgtcagcatagatcaagtcaaaattgaccttgggggccaaaactgccacagatgtaaaacttagg 7218384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 48348409 - 48348501
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||| |||||||||||| ||||||| |||||||||||   || |||| |||||||| ||||||||||||| ||| |||||| ||||    
T  48348409 cacctcacttagcgtgccacgtcagcgtagaccgagtcaaaattgggctt-ggggtcaaaactgccacatatgcaaaacttaaggggcgatttt 48348501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 52008421 - 52008309
Alignment:
Q  14 aaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggcc--aaaactgacacatatgcaaaatttaggg 111  Q
    |||||||| | |||||||||||||| ||| |||||||| ||||||| |||||||||| |  || ||||||  ||||||| ||||||||||||| |||| |    
T  52008421 aaataacacgtgacacctcacttagggtgtcacgtcagcgtagaccgagtcaaaattaattttaggggccaaaaaactgccacatatgcaaaaattagag 52008322  T
Q  112 ggcggttttatag 124  Q
    |||  ||||||||    
T  52008321 ggcaattttatag 52008309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 25843529 - 25843441
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcg 115  Q
    |||||| ||||| |||||||||||| ||||||   |||||||||| | |||||| ||||||||| |||| |||||||| ||||||||||    
T  25843529 cacctcgcttagggtgccacgtcagcgtagactgggtcaaaattggccttggggaccaaaactgccacagatgcaaaacttagggggcg 25843441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 38957981 - 38957917
Alignment:
Q  56 gaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||| ||||||||||| | |||||||||||||||| |||| |||||||| |||||||||||||||    
T  38957981 gaccgagtcaaaattggccttgggggccaaaactgccacaaatgcaaaacttagggggcggtttt 38957917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 1814693 - 1814797
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattga-cattgggggccaaaactgacacatatgcaaaatttaggg 111  Q
    ||||||||| | | |||||||||||| |||||||||||| ||||||| |||||||||||| | | |||||||||||||| |    |||||||| ||||||    
T  1814693 aaaataacacgtggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattgatcttagggggccaaaactgcc----atgcaaaacttaggg 1814788  T
Q  112 ggcggtttt 120  Q
    | |||||||    
T  1814789 gacggtttt 1814797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 46226861 - 46226775
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttaggggg 113  Q
    |||||||||||| |||||||||||| ||| ||| ||| ||||||| ||| |||||||||||||| ||||  |||||||  |||||||    
T  46226861 cacctcacttagggtgccacgtcagcgtataccgagttaaaattggcatcgggggccaaaactgccacaggtgcaaaacataggggg 46226775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 43586715 - 43586788
Alignment:
Q  31 tcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaa 104  Q
    |||||||| |||||||||||| |||||||||||||||||||  ||  ||||||| ||||| |||| ||||||||    
T  43586715 tcacttagggtgccacgtcagcgtagaccaagtcaaaattggtatcaggggccataactgtcacaaatgcaaaa 43586788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 44624787 - 44624711
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaa 104  Q
    |||||||||||| |||||||||||| ||||||| ||||||||||| | || ||| ||||||||| |||| ||||||||    
T  44624787 cacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggcctt-gggaccaaaactgccacagatgcaaaa 44624711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 36677661 - 36677737
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaa 103  Q
    |||||||||||  |||||||||||| ||| ||| ||||||||||||| |||| |||||||| || |||| |||||||    
T  36677661 cacctcacttaaggtgccacgtcagcgtaaaccgagtcaaaattgaccttggaggccaaaattgccacaaatgcaaa 36677737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 49787397 - 49787337
Alignment:
Q  44 cacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaa 104  Q
    |||||||| ||||||| ||||||||||||| |||| ||||||||||| |||| ||||||||    
T  49787397 cacgtcagcgtagaccgagtcaaaattgactttggaggccaaaactgccacagatgcaaaa 49787337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 86751 - 86640
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | |||||||||||| || ||| ||||| ||||| | |||||||||||   ||||||||||||||||  |||  ||||||| ||||||     
T  86751 aaaataacacgtggcacctcacttagggtcccatgtcagcgtagatcgagtcaaaattggtcttgggggccaaaactgctacaagtgcaaaacttagggc 86652  T
Q  113 gcggttttatag 124  Q
    || |||||||||    
T  86651 gcagttttatag 86640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 3192949 - 3192874
Alignment:
Q  15 aataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattg-ggggccaaaact 89  Q
    ||||||||| | |||||||||||| |||||| || |||||||||| ||||||||||||| ||| |||||| |||||    
T  3192949 aataacatgtggcacctcacttagggtgccatgttagtgtagaccgagtcaaaattgaccttgaggggcctaaact 3192874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 14340882 - 14340969
Alignment:
Q  25 gacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    |||||||||||||   ||||| || || ||||||| ||||||||||  | |||||||||||||||| |||| |||||||| |||||||    
T  14340882 gacacctcacttaacctgccatgttagcgtagaccgagtcaaaattagcgttgggggccaaaactgccacaaatgcaaaacttagggg 14340969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 578563 - 578625
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaact 89  Q
    |||||| ||||| ||||||||||||  |||||| ||||||||||| | |||||||||||||||    
T  578563 cacctcgcttagggtgccacgtcagcatagaccgagtcaaaattggccttgggggccaaaact 578625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 36567024 - 36567086
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaact 89  Q
    |||||||||||| |||||||||||| || |||| ||||||||| | | |||||||||||||||    
T  36567024 cacctcacttagggtgccacgtcagcgttgaccgagtcaaaatcggccttgggggccaaaact 36567086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 50724891 - 50724841
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||||||||||| |||| ||||||||| || ||||||||||||||||||    
T  50724891 gtgccacgtcagtgaagactaagtcaaaagtggcattgggggccaaaactg 50724841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 50787959 - 50788009
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||||||||||| |||| ||||||||| || ||||||||||||||||||    
T  50787959 gtgccacgtcagtgaagactaagtcaaaagtggcattgggggccaaaactg 50788009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 36316003 - 36315922
Alignment:
Q  39 agtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||||||| |||| ||||||||||||  | |||||||||||||| || |||| ||| |  |||||||| |||||    
T  36316003 agtgccacgtcagtgttgaccgagtcaaaattgatctagggggccaaaactgccaaatatccaatacatagggggcagtttt 36315922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 8024918 - 8025017
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||||| |  |||||| ||||  || |||||||| ||||||| ||| |||||||   |||| ||||||||||  ||||||||||||| |||||||    
T  8024918 aaaataacatgtggtacctcatttaggatgtcacgtcagcgtagaccgagttaaaattggtcttggaggccaaaactaccacatatgcaaaacttagggg 8025017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 14992781 - 14992843
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaact 89  Q
    |||||||||||  |||||| ||||| ||||||  ||||||||||||| ||||||| |||||||    
T  14992781 cacctcacttaaggtgccatgtcagcgtagactgagtcaaaattgaccttgggggacaaaact 14992843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 25248854 - 25248761
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggcc-aaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    ||||||||||||  | ||||||| ||||||||| ||||||||||||  |||||| || ||||||  |||| |||||||| |||| ||||||||||    
T  25248854 cacctcacttaggctaccacgtc-gtgtagaccgagtcaaaattgatcttggggaccaaaaactaccacagatgcaaaacttagagggcggtttt 25248761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 43001787 - 43001837
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||||||||| | |||| ||||||||| || ||||||||||||||||||    
T  43001787 gtgccacgtcagcgaagactaagtcaaaagtggcattgggggccaaaactg 43001837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 53764725 - 53764675
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||||||||||| |||| ||||||||| || | ||||||||||||||||    
T  53764725 gtgccacgtcagtgaagactaagtcaaaagtggccttgggggccaaaactg 53764675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 40410038 - 40410087
Alignment:
Q  41 tgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||| |||| | ||||||||||||||||| ||||| ||||||||||||    
T  40410038 tgccacatcagcgaagaccaagtcaaaattggcattgagggccaaaactg 40410087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 12759644 - 12759704
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgac 73  Q
    ||||||||||| | |||||||||||| ||| ||||||||  |||| | |||||||||||||    
T  12759644 aaaataacatgtggcacctcacttagggtgtcacgtcagcctagatcgagtcaaaattgac 12759704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 22494667 - 22494623
Alignment:
Q  76 tgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||| || |||| ||||||||||||| ||||||||||    
T  22494667 tgggggccaaaattgccacaaatgcaaaatttagagggcggtttt 22494623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 34761025 - 34760918
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    |||| |||||| |||||||||||||| ||||||||||||  ||||||| ||||||||||   |||||||||||||||| ||||||||||||| |||||||    
T  34761025 aaaaaaacatgtgacacctcacttagggtgccacgtcagcatagaccacgtcaaaattggtcttgggggccaaaactgccacatatgcaaaacttagggg 34760926  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  34760925 gcggtttt 34760918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 37431721 - 37431614
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||||| | |||||||||||| |||||||||||| ||||||| ||||||||||| | |||||||||||||||| |||| |||||||| |||| ||    
T  37431721 aaaataacatgtggcacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggccttgggggccaaaactgccacaaatgcaaaacttagtgg 37431622  T
Q  113 gcggtttt 120  Q
    ||| ||||    
T  37431621 gcgatttt 37431614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 41196366 - 41196457
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaa 104  Q
    ||||||||||| | |||||||||||| |||||||||||| |||||||||||| ||||||||||||||||| ||||||  |||||||||||||    
T  41196366 aaaataacatgtggcacctcacttagggtgccacgtcagcgtagaccaagtctaaattgacattgggggcaaaaacttccacatatgcaaaa 41196457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 44617875 - 44617982
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | ||||||||| |||| |||||||||||| ||||||| |||||||||||   |||||||||||||||| |||| |||||||| |||||||    
T  44617875 aaaataacaggtgacacctcatttagggtgccacgtcagcgtagaccgagtcaaaattggtcttgggggccaaaactgccacaaatgcaaaacttagggg 44617974  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  44617975 gcggtttt 44617982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 24306157 - 24306266
Alignment:
Q  15 aataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggc 114  Q
    ||||||||| |||||||||||||| ||| ||| |||| ||||| ||||||||||||||| |||||||||| ||||| ||||| ||||||| ||| ||| |    
T  24306157 aataacatgtgacacctcacttagggtgtcacatcagcgtagatcaagtcaaaattgaccttgggggccagaactgtcacatgtgcaaaacttaagggac 24306256  T
Q  115 ggttttatag 124  Q
    ||||||||||    
T  24306257 ggttttatag 24306266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 37803300 - 37803194
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | ||||||| |||||| |||||||||||| ||||||| |||||||||||||||| |||| |||||||| |||| |||||||| ||||| |    
T  37803300 aaaataacacgtgacaccttacttagggtgccacgtcagcgtagaccgagtcaaaattgacatt-ggggtcaaaactgccacaaatgcaaaacttaggag 37803202  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  37803201 gcggtttt 37803194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 24472583 - 24472683
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | |||||||||||| ||||||||| |||||||||  ||||||||||| |||||| ||||||||||| |||| |||||||| |||||||    
T  24472583 aaaataacacgtggcacctcacttagggtgccacgttagtgtagacggagtcaaaattggcattggcggccaaaactgccacagatgcaaaacttagggg 24472682  T
Q  113 g 113  Q
    |    
T  24472683 g 24472683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 8857224 - 8857117
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | ||||||| |||  ||||||| |||| || |||||||||||||||| |||||||||||||||||| |||| |||||||| ||||| |    
T  8857224 aaaataacacgtggcacctcatttaaggtgccacatcagcgttgaccaagtcaaaattggcattgggggccaaaactgccacaaatgcaaaacttaggag 8857125  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  8857124 gcggtttt 8857117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 39918612 - 39918505
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | |||||||||||| |||||||||||| | ||||| ||||||||||| | |||||||||||||| | ||||||||||||| |||| ||    
T  39918612 aaaataacacgtggcacctcacttagggtgccacgtcagcgaagaccgagtcaaaattggccttgggggccaaaacagccacatatgcaaaacttagcgg 39918513  T
Q  113 gcggtttt 120  Q
    ||| ||||    
T  39918512 gcgatttt 39918505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 5008424 - 5008534
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    |||| |||||| | || ||||||||| |||||||||||| ||||||| ||||||||||||| ||| ||||||||| || |||| |||||||| |||| ||    
T  5008424 aaaaaaacatgtggcatctcacttagggtgccacgtcagcgtagaccgagtcaaaattgaccttgagggccaaaattgccacaaatgcaaaacttagagg 5008523  T
Q  113 gcggttttata 123  Q
     ||||||||||    
T  5008524 acggttttata 5008534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 5470487 - 5470580
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||| ||||||||||||  |||||| ||||||||||| | |||||||||||||||| |||| ||| |||| ||| |||||||||||    
T  5470487 cacctcacttagggtgccacgtcagcatagaccgagtcaaaattggccttgggggccaaaactgccacagatgtaaaacttaaggggcggtttt 5470580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 25333662 - 25333565
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggttttatag 124  Q
    ||||| |||||| |||||||||||| ||||||||||||||||||| | |||| | ||||||||| ||||  ||||||| |||||||| ||||||||||    
T  25333662 caccttacttagggtgccacgtcagcgtagaccaagtcaaaattggccttggagaccaaaactgccacaggtgcaaaacttagggggtggttttatag 25333565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 6510177 - 6510071
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||||| | |||||||||||| |||||||||||   |||| | | ||||||||||| |||| ||||||| ||| ||||||||||||| |||||||    
T  6510177 aaaataacatgtggcacctcacttagggtgccacgtcaacatagatcgattcaaaattgaccttggaggccaaa-ctgccacatatgcaaaaattagggg 6510079  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  6510078 gcggtttt 6510071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 27489610 - 27489510
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | ||||||||||||  ||||||||||| ||| ||| ||||||||||| | |||| ||||||||||| |||| |||||||| |||||||    
T  27489610 aaaataacacgtgtcacctcacttaggatgccacgtcagcgtaaaccgagtcaaaattgcccttggaggccaaaactgccacagatgcaaaagttagggg 27489511  T
Q  113 g 113  Q
    |    
T  27489510 g 27489510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 2609242 - 2609332
Alignment:
Q  30 ctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    ||||||||| ||||||| |||| ||||||| ||||||||||||  ||||||| |||||||| |||||||| |||| ||| |||||| ||||    
T  2609242 ctcacttagggtgccacatcagcgtagaccgagtcaaaattgatcttgggggtcaaaactgccacatatgtaaaacttatggggcgatttt 2609332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 43028957 - 43028871
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttaggggg 113  Q
    |||||||||||| |||||||||||| ||||||| ||||||||||| |  | | ||||||||||| |||| |||||||| ||||||||    
T  43028957 cacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggccctagaggccaaaactgccacagatgcaaaacttaggggg 43028871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 6592890 - 6592805
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    |||||||||||| |||| | ||||| ||||||  ||||||||||  ||||| |||||||||||| ||||||||||||| |||||||    
T  6592890 cacctcacttagggtgcaatgtcagcgtagactgagtcaaaattagcattgagggccaaaactgccacatatgcaaaacttagggg 6592805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 14943695 - 14943788
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||| ||||||| |||| ||||||| ||||||||||  | ||||||||||||| || ||||  ||||||| |||| ||||||||||    
T  14943695 cacctcacttagggtgccacatcagcgtagaccgagtcaaaattagccttgggggccaaaaatgccacaggtgcaaaacttagagggcggtttt 14943788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 25411701 - 25411612
Alignment:
Q  31 tcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||  ||||||||||||  |||||| |||||||||||  ||||||||  ||||||| |||| |||||||| |||||||||||||||    
T  25411701 tcacttatggtgccacgtcagcatagaccgagtcaaaattggtattgggggtgaaaactgccacagatgcaaaacttagggggcggtttt 25411612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 31827704 - 31827603
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacatt-gggggccaaaactgacacatatgcaaaatttaggg 111  Q
    |||| |||||| | |||||||||||| |||||||||||| ||||||| | ||||||||||  || |||||||||||||| |||| |||||||  ||||||    
T  31827704 aaaaaaacatgtggcacctcacttagggtgccacgtcagcgtagaccgaatcaaaattgattttggggggccaaaactggcacagatgcaaagcttaggg 31827605  T
Q  112 gg 113  Q
    ||    
T  31827604 gg 31827603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 18969230 - 18969326
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttag 109  Q
    ||||||||| | ||||||||| |||||||| |||||||| |||| || ||||||||||| | ||||||| |||||| | |||| || ||||||||||    
T  18969230 aaaataacacgtgacacctcatttagagtgtcacgtcagcgtaggcctagtcaaaattggccttgggggtcaaaacagccacaaatacaaaatttag 18969326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 4576693 - 4576756
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||||||||| |||||||| ||| ||||||| ||||||||||| || |||||||||||||||    
T  4576693 cacctcacttagggtgccacgccagcgtagaccgagtcaaaattggcagtgggggccaaaactg 4576756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 14489391 - 14489284
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | |||||||| ||| ||||||| |||| ||||||| |||||||||||   |||| || |||||||| ||||  ||||||| |||||||    
T  14489391 aaaataacacgtggcacctcacgtagggtgccacatcagcgtagaccgagtcaaaattggtcttggaggtcaaaactgccacaggtgcaaaacttagggg 14489292  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  14489291 gcggtttt 14489284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 34600698 - 34600648
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||||||||||| ||||||||||||||||| | ||||||||||||||||    
T  34600698 gtgccacgtcagtgaagaccaagtcaaaattggccttgggggccaaaactg 34600648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 34679261 - 34679175
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttaggggg 113  Q
    |||||||||||| |||||||||||| |||||||  |||||||||    |||| ||||||||||| ||||| ||||||| ||||||||    
T  34679261 cacctcacttagggtgccacgtcagcgtagaccgggtcaaaatttgtcttggaggccaaaactgccacatgtgcaaaacttaggggg 34679175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 16238386 - 16238435
Alignment:
Q  41 tgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||| |||| | ||||||||||||||||||||||||||||||||||||    
T  16238386 tgccacatcagcgaagaccaagtcaaaattgacattgggggccaaaactg 16238435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 35718805 - 35718716
Alignment:
Q  31 tcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||| ||||||| |||  ||||||  ||||||||||| | |||| ||||||||||| |||| ||||||||| |||||| |||||||    
T  35718805 tcacttagggtgccacatcaccgtagactgagtcaaaattggccttggaggccaaaactgccacagatgcaaaatgtaggggacggtttt 35718716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 32969704 - 32969628
Alignment:
Q  44 cacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||| ||||||| ||||||||||| | ||||| |||||||||| |||| ||| |||| |||||||||| ||||    
T  32969704 cacgtcagcgtagaccgagtcaaaattggccttgggagccaaaactgccacaaatgaaaaacttagggggcgatttt 32969628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 4925617 - 4925510
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | ||||| |||||| |||||||||||| ||||||  |  ||||||||   || |||| |||||||| ||||||||||||| |||||||    
T  4925617 aaaataacacgtggcaccttacttagggtgccacgtcagcgtagacagaaccaaaattggtcttaggggtcaaaactgccacatatgcaaaacttagggg 4925518  T
Q  113 gcggtttt 120  Q
     |||||||    
T  4925517 acggtttt 4925510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 15023002 - 15022916
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattggggg-ccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||| |||| |||||| ||||| ||||||  ||||||| ||| | ||||||| ||||||||| |||| ||||||||||||||||    
T  15023002 cacctcaattagggtgccatgtcagcgtagactgagtcaaatttggccttggggggccaaaactgccacaaatgcaaaatttagggg 15022916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 16043206 - 16043263
Alignment:
Q  61 agtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtt 118  Q
    ||||||||||| | |||||||||||||||| |||| ||||||||  ||||||||||||    
T  16043206 agtcaaaattggccttgggggccaaaactgccacagatgcaaaacatagggggcggtt 16043263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 19895764 - 19895841
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaa 104  Q
    |||||||||||| |||| |||||||  || ||| | ||||||||| |||||||||| ||||||| |||||||| ||||    
T  19895764 cacctcacttagggtgctacgtcagcataaaccgaatcaaaattggcattgggggctaaaactgccacatatgtaaaa 19895841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 22333231 - 22333280
Alignment:
Q  38 gagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaa 87  Q
    |||||||||||||| || |||||| ||||||||||||||||||| |||||    
T  22333231 gagtgccacgtcagcgtggaccaaatcaaaattgacattgggggtcaaaa 22333280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 36195729 - 36195773
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattg 71  Q
    |||||||||||| |||||||||||| ||||||| |||||||||||    
T  36195729 cacctcacttagggtgccacgtcagcgtagaccgagtcaaaattg 36195773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 8553680 - 8553770
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaa 104  Q
    ||||||||| | | |||||||||||| ||| ||||||||  |||||| |||| |||||||| ||||| | |||||||| |||| ||||||||    
T  8553680 aaaataacacgtggcacctcacttagggtgtcacgtcagcatagaccgagtc-aaattgactttgggagacaaaactgccacaaatgcaaaa 8553770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 25092459 - 25092380
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatt 106  Q
    ||||||||||||  |||||||||||  | |||| ||||||||||||| || |||| |||||| | |||| ||||||||||    
T  25092459 cacctcacttaggatgccacgtcagcattgaccgagtcaaaattgactttcggggacaaaacggtcacagatgcaaaatt 25092380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 19399328 - 19399370
Alignment:
Q  28 acctcacttagagtgccacgtcagtgtagaccaagtcaaaatt 70  Q
    ||||||||||| |||||||||||| ||||||| ||||||||||    
T  19399328 acctcacttagggtgccacgtcagcgtagaccgagtcaaaatt 19399370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 28451868 - 28451918
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||||||||| | |||| ||||||||| |||| ||||||||||||||||    
T  28451868 gtgccacgtcagcgaagactaagtcaaaagtgaccttgggggccaaaactg 28451918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 37343845 - 37343895
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||||||||| | |||| ||||||||| || ||||||||||||||||||    
T  37343845 gtgccacgtcagcgaagactaagtcaaaagtggcattgggggccaaaactg 37343895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 37551903 - 37551956
Alignment:
Q  38 gagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactga 91  Q
    ||||| |||||||| | |||| ||||||||| || |||||||||||||||||||    
T  37551903 gagtgtcacgtcagcgaagactaagtcaaaagtggcattgggggccaaaactga 37551956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 29657868 - 29657774
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattggggg-ccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||| ||| |||||||||||||||| | ||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||    
T  29657868 cacctcacttagggtgtcacgtcagtgtagaccgaatcaaaattgactttggggggccaaaactgccacatatgcaaaatttagggggcggtttt 29657774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 45177379 - 45177280
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||  | ||| |||||||||||| |||| |||||||| |||||||    
T  45177379 aaaataacatgtgacacctcacttagggtgccacgtcagtgtagaccgagtcaaaattagccttgagggccaaaactgtcacagatgcaaaacttagggg 45177280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 30539141 - 30539234
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||| ||||||||||||  |||||| | |||||||||||||||||||||||||||| |||| |||||||| ||||||| |||||||    
T  30539141 cacctcacttagggtgccacgtcagcatagaccgaatcaaaattgacattgggggccaaaactgccacagatgcaaaacttaggggacggtttt 30539234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 37813247 - 37813334
Alignment:
Q  33 acttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||| |||||||||||| ||||||| ||||||||||| | |||||||||||||||| |||| |||||||| |||||||||||||||    
T  37813247 acttagggtgccacgtcagcgtagaccgagtcaaaattggccttgggggccaaaactgccacagatgcaaaacttagggggcggtttt 37813334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 29790935 - 29790834
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||||| ||||| |||| ||| |||||||||||| ||||||||||||||||||||| | |||| ||||||||| ||||| ||||||| |||| ||    
T  29790935 aaaataacatgtgacacttcacatagggtgccacgtcagcgtagaccaagtcaaaattgacctcggggaccaaaactgccacatgtgcaaaacttagagg 29790836  T
Q  113 gc 114  Q
    ||    
T  29790835 gc 29790834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 16982747 - 16982853
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | |||||||||| | |||||||||||| |||||| |||||||||||| | ||||||| |||||||| |||| |||||||| |||||||    
T  16982747 aaaataacacgtggcacctcacttggggtgccacgtcagcgtagactaagtcaaaattggccttggggg-caaaactggcacagatgcaaaacttagggg 16982845  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  16982846 gcggtttt 16982853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 21486820 - 21486725
Alignment:
Q  25 gacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||||| ||| |||||||| ||||||||||||||||||||  |||| |||||||| || ||||  ||||||| |||||||||||||||    
T  21486820 gacacctcacttagggtgtcacgtcagcgtagaccaagtcaaaattgatcttggaggccaaaaatgccacaggtgcaaaacttagggggcggtttt 21486725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 3676278 - 3676371
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||| |||||||||||| ||||||| |||||||||||   |||||| ||||||||| |||| |||||||| |||| ||||||||||    
T  3676278 cacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggttttggggaccaaaactgccacagatgcaaaacttagtgggcggtttt 3676371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 6807319 - 6807412
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||| |||||||||||| ||||||  ||||||||||||| ||| ||| |||||||| |||| |||||||| |||||||| ||||||    
T  6807319 cacctcacttagggtgccacgtcagcgtagacagagtcaaaattgaccttgagggacaaaactgccacaaatgcaaaacttagggggtggtttt 6807412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 20699344 - 20699422
Alignment:
Q  25 gacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaa 104  Q
    ||||||||||||| |||||||| |||| ||||||||||||||||||||| ||| ||||||||||||||||| ||| ||||    
T  20699344 gacacctcactta-agtgccacatcagcgtagaccaagtcaaaattgactttgagggccaaaactgacacaaatgtaaaa 20699422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 39889926 - 39890012
Alignment:
Q  30 ctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcgg 116  Q
    ||||||||||||| |||||||| ||| ||| |||||||||||||||||| |||||||| || |||| |||||||| |||| ||||||    
T  39889926 ctcacttagagtgtcacgtcagcgtaaaccgagtcaaaattgacattggaggccaaaattgccacagatgcaaaacttagagggcgg 39890012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 41487346 - 41487453
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||||  | |||||||||||| ||| |||||||| ||||||| |||||||||||   |||||||||||||| |  |||  ||||||| |||||||    
T  41487346 aaaataacatatggcacctcacttagcgtgtcacgtcagcgtagaccgagtcaaaattggtcttgggggccaaaacagctacagttgcaaaacttagggg 41487445  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  41487446 gcggtttt 41487453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 14880495 - 14880414
Alignment:
Q  31 tcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||  |||||||||||  |||||| ||||||||| | | |||||||||||||||| |||| ||||||||||||||||    
T  14880495 tcacttaggatgccacgtcagcatagaccgagtcaaaatcggccttgggggccaaaactgccacagatgcaaaatttagggg 14880414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 20853540 - 20853447
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    ||||||| || | |||||||||||  ||||| | | ||||||||||  |||||||||||||||| ||||||||||||| |||||||| ||||||    
T  20853540 cacctcattttgggtgccacgtcaacgtagatctattcaaaattgatcttgggggccaaaactgccacatatgcaaaacttagggggtggtttt 20853447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 29044697 - 29044774
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaa 104  Q
    ||||||| |||| || ||||||||| ||||||| ||||||||||| | |||||||||||||||| |||| ||||||||    
T  29044697 cacctcatttagggtaccacgtcagcgtagaccgagtcaaaattggccttgggggccaaaactgccacaaatgcaaaa 29044774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 23702271 - 23702370
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | || ||||||||| |||||| |||||  |||||  ||||||||||||| |||| ||||||||||| |||| |||||||| |||||||    
T  23702271 aaaataacacgtggcatctcacttagggtgccatgtcagcatagactgagtcaaaattgaccttggaggccaaaactgtcacaaatgcaaaacttagggg 23702370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 22846607 - 22846530
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaa 104  Q
    |||||||||||| |||||| ||||| ||||||||| ||||||||| | ||| |||||||||||| || | ||||||||    
T  22846607 cacctcacttagggtgccatgtcagcgtagaccaattcaaaattgcccttgagggccaaaactgccaaagatgcaaaa 22846530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 25144120 - 25144024
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttag 109  Q
    ||||||||||| | ||| |||||||| |||| ||||||| ||| ||| ||||||||||| | ||||  |||||||||| |||| |||||||| ||||    
T  25144120 aaaataacatgtggcacatcacttagggtgcaacgtcagcgtaaaccgagtcaaaattggctttggatgccaaaactgccacagatgcaaaacttag 25144024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 37940061 - 37939982
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||| ||||||| |||||||||||   |||| | ||||||||| ||||||||||||| |||||||| ||||||    
T  37940061 gtgccacgtcagcgtagaccgagtcaaaattggtcttggtg-ccaaaactgccacatatgcaaaacttagggggtggtttt 37939982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 9762378 - 9762287
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaa 104  Q
    ||||||||||| | ||||||| |||  |||||||||||| ||||||  | |||||||||| ||||| ||||||||||| || | ||||||||    
T  9762378 aaaataacatgtggcacctcatttaatgtgccacgtcagcgtagacagaatcaaaattgatattggaggccaaaactgccaaagatgcaaaa 9762287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 32071164 - 32071258
Alignment:
Q  26 acacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    ||||||||||||  |||  | ||||| ||||||| |||||||||||   |||| | ||||||||| || |||||||||| |||||||||||||||    
T  32071164 acacctcacttaaggtgatatgtcagcgtagaccgagtcaaaattgttcttggagaccaaaactgtcatatatgcaaaacttagggggcggtttt 32071258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 33984121 - 33984072
Alignment:
Q  41 tgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||| |||||| ||||||||||||||| | ||||||||||||||||||    
T  33984121 tgccacatcagtgaagaccaagtcaaaatggccattgggggccaaaactg 33984072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 27545503 - 27545420
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttaggg 111  Q
    |||||||||||| |||||||||||| ||||| | ||| ||||||| | || ||||||||||||| || | |||||||| ||||||    
T  27545503 cacctcacttagggtgccacgtcagcgtagatcgagttaaaattggc-tttggggccaaaactgccatagatgcaaaacttaggg 27545420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 36688159 - 36688215
Alignment:
Q  30 ctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaa 86  Q
    ||||||||| |||||||||||| ||||||||| |||||||||   ||||||||||||    
T  36688159 ctcacttagggtgccacgtcagcgtagaccaaatcaaaattggtcttgggggccaaa 36688215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 22192446 - 22192509
Alignment:
Q  25 gacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaac 88  Q
    |||||||||||||| ||||||| | || ||||||| ||||||||||||| ||||  ||||||||    
T  22192446 gacacctcacttagggtgccacataagcgtagaccgagtcaaaattgaccttggcagccaaaac 22192509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 13229513 - 13229563
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||||||||| | |||| ||||||||| |||||||||| ||||||||||    
T  13229513 gtgccacgtcagcgaagactaagtcaaaagtgacattgggagccaaaactg 13229563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 33298503 - 33298430
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaatt-gacattgggggccaaaactgacacatatgc 100  Q
    |||||||||||| |||||||||||| ||||||| | |||||||| ||| ||||| |||||||||| |||| ||||    
T  33298503 cacctcacttagggtgccacgtcagcgtagaccgaatcaaaattagac-ttgggagccaaaactgccacagatgc 33298430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 35213165 - 35213239
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaa 87  Q
    ||||||||| | | |||||||||||  |||||||||||| |||| || ||||||||||||| || ||| ||||||    
T  35213165 aaaataacacgtggcacctcacttaaggtgccacgtcagcgtaggccgagtcaaaattgaccttcgggtccaaaa 35213239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 36624074 - 36624124
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||||||||| | |||| ||||||||| || ||||||||||||||||||    
T  36624074 gtgccacgtcagcgaagactaagtcaaaaatggcattgggggccaaaactg 36624124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 45309483 - 45309564
Alignment:
Q  39 agtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    ||||||||||||| || ||||||||||||||||   | |||||||||||||| || |||| ||| |  |||||||| |||||    
T  45309483 agtgccacgtcagcgttgaccaagtcaaaattggtctagggggccaaaactgccaaatatccaatacatagggggctgtttt 45309564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 41567102 - 41567170
Alignment:
Q  44 cacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||  |||||| |||||||||| |||||| |||  |||||||  ||| ||||||||||||||||    
T  41567102 cacgtcagcatagaccgagtcaaaattaacattgagggttaaaactgtgacagatgcaaaatttagggg 41567170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 44269282 - 44269346
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaa 104  Q
    ||||||| |||| ||||  | ||||||||||| |||||||||||||||||  |||| ||||||||    
T  44269282 gtgccacatcagcgtaggtcgagtcaaaattggcattgggggccaaaactaccacaaatgcaaaa 44269346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 45457158 - 45457226
Alignment:
Q  45 acgtcagtgtagaccaagtcaaaattga-cattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||| ||||| |||||||||||||  | ||||| | |||||||| |||| ||||||||||||||||    
T  45457158 acgtcagcgtagatcaagtcaaaattgggccttgggagtcaaaactgccacagatgcaaaatttagggg 45457226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 5003215 - 5003316
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||||| |||||||||||||| ||| |||||||| ||||||||||| ||||||||||||||| |||||||||| ||||  ||||||| |||||||    
T  5003215 aaaataacatgtgacacctcacttagggtgtcacgtcagcgtagaccaagttaaaattgacattgggagccaaaactgccacaattgcaaaacttagggg 5003314  T
Q  113 gc 114  Q
    ||    
T  5003315 gc 5003316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 26311554 - 26311647
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    ||||||||||||  ||||||||||| ||||||| ||||||||||||| |||||||||||||||| ||||||||||||| ||| |||| ||||||    
T  26311554 cacctcacttaggatgccacgtcagcgtagaccgagtcaaaattgaccttgggggccaaaactgccacatatgcaaaacttaaggggtggtttt 26311647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 10727330 - 10727437
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    |||| |||||| | || ||||||||| || ||||||||| ||||| ||||||||||||| | |||||||||||||||| |||| |||||||| |||||||    
T  10727330 aaaaaaacatgtggcatctcacttagggtcccacgtcagcgtagatcaagtcaaaattggccttgggggccaaaactgccacagatgcaaaacttagggg 10727429  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  10727430 gcggtttt 10727437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 18031078 - 18031185
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | |||||||||||||| |||||||||||| ||||||||||||||||||||  ||| |||||||||||  |||| || ||||| ||| |||    
T  18031078 aaaataacaagtgacacctcacttagggtgccacgtcagcgtagaccaagtcaaaattgatcttgagggccaaaactatcacaaatacaaaacttaaggg 18031177  T
Q  113 gcggtttt 120  Q
     |||||||    
T  18031178 acggtttt 18031185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 33399962 - 33399855
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | ||||| |||||||| |||||||||||| ||||||| ||||||||||||| || ||||||||||||| |||| ||| |||| ||||||     
T  33399962 aaaataacacgtgacacatcacttagggtgccacgtcagcgtagaccgagtcaaaattgaccttaggggccaaaactgccacaaatgtaaaacttagggt 33399863  T
Q  113 gcggtttt 120  Q
     |||||||    
T  33399862 ccggtttt 33399855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 32143435 - 32143329
Alignment:
Q  14 aaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttaggggg 113  Q
    |||||||||| | |||||||||||||||||||| |||  ||||||| |||||||||||   |||||||||||||||| ||||  ||||||| ||| ||||    
T  32143435 aaataacatgtgccacctcacttagagtgccacatcaacgtagaccgagtcaaaattggtcttgggggccaaaactgccacaggtgcaaaacttaagggg 32143336  T
Q  114 cggtttt 120  Q
    |||||||    
T  32143335 cggtttt 32143329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 6036799 - 6036895
Alignment:
Q  16 ataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    |||||||| | |||||||||||| ||| ||||||||  || ||||||||||||||| | ||||||| |||||||| ||||||||||||| |||||||    
T  6036799 ataacatgtggcacctcacttagggtgtcacgtcagcataaaccaagtcaaaattggctttgggggtcaaaactgccacatatgcaaaacttagggg 6036895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 20474855 - 20474943
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcg 115  Q
    |||||||| |||| ||||||||||  ||| ||| |||||| ||||||||||||||||||||||| |||| |||||||| ||||||||||    
T  20474855 cacctcacatagactgccacgtcaacgtataccgagtcaacattgacattgggggccaaaactgccacagatgcaaaacttagggggcg 20474943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 30349526 - 30349419
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||||| | |||||||||||| |||||||||||  ||||||| ||||| ||||| | ||||||| |||||||  |||| |||||||| ||| |||    
T  30349526 aaaataacatgtggcacctcacttagggtgccacgtcaacgtagaccgagtcataattggccttgggggtcaaaactaccacagatgcaaaacttaaggg 30349427  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  30349426 gcggtttt 30349419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 11351799 - 11351722
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaa 104  Q
    |||||||||||| |||||||||||| ||||||| ||||||||||| |||||||| | ||||||| || ||||| ||||    
T  11351799 cacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggcattggggacgaaaactgccatatatgtaaaa 11351722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 2853582 - 2853658
Alignment:
Q  44 cacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||| |||||   ||||||||||| | |||||||||||||||| |||||||| |||| |||||||||||||||    
T  2853582 cacgtcagcgtagaatgagtcaaaattggccttgggggccaaaactgccacatatgaaaaacttagggggcggtttt 2853658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 3812903 - 3812820
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttaggg 111  Q
    |||||||||||| |||||||||||| |||||||  ||||||||||   || ||||||||||||| ||||||||||||| ||||||    
T  3812903 cacctcacttagggtgccacgtcagcgtagaccgggtcaaaattggtctt-ggggccaaaactgccacatatgcaaaacttaggg 3812820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 239095 - 239158
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||||||||| |||||||||||| ||||||| | ||||||||| | ||||| ||||||||||    
T  239095 cacctcacttagggtgccacgtcagcgtagaccgaatcaaaattggccttgggtgccaaaactg 239158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 266248 - 266354
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | ||||||||||||||  || |||||||| ||||||| | |||||||||   || ||||||||||||| ||||  ||||||| ||| |||    
T  266248 aaaataacacgtgacacctcacttaggatgtcacgtcagcgtagaccgaatcaaaattg-gttttggggccaaaactgccacaggtgcaaaacttaaggg 266346  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  266347 gcggtttt 266354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 1377385 - 1377278
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||| ||||| | |||||||||||| |||| || ||||  |||||| |||||||||   | ||| |||||||||| | |||| ||||||||||||||||    
T  1377385 aaaatgacatgtggcacctcacttagggtgcgacatcagcatagaccgagtcaaaataagccttgagggccaaaacagccacaaatgcaaaatttagggg 1377286  T
Q  113 gcggtttt 120  Q
    ||| ||||    
T  1377285 gcgatttt 1377278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 1385133 - 1385026
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||| ||||| | |||||||||||| |||| || ||||  |||||| |||||||||   | ||| |||||||||| | |||| ||||||||||||||||    
T  1385133 aaaatgacatgtggcacctcacttagggtgcgacatcagcatagaccgagtcaaaataagccttgagggccaaaacagccacaaatgcaaaatttagggg 1385034  T
Q  113 gcggtttt 120  Q
    ||| ||||    
T  1385033 gcgatttt 1385026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 17248814 - 17248707
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| |||  ||||||||||| |||||||||||  ||||||| | |||||||||   ||  |||||||||||| | || |||||||| |||| ||    
T  17248814 aaaataacacggggtacctcacttagggtgccacgtcaacgtagaccgaatcaaaattggtcttaagggccaaaactgtcgcagatgcaaaacttagagg 17248715  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  17248714 gcggtttt 17248707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 17532428 - 17532322
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||||| | |||||||||| | |||||| ||||  ||||||| |||||||| || | || ||||||||||||| ||||  ||||||| ||| |||    
T  17532428 aaaataacatgtggcacctcacttgg-gtgccatgtcatcgtagaccgagtcaaaactggctttaggggccaaaactgccacaggtgcaaaacttaaggg 17532330  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  17532329 gcggtttt 17532322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 26601626 - 26601531
Alignment:
Q  25 gacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    ||||||||||| || |||| || |||| ||||||| |||||||||||   |||||| ||||| ||| |||| |||||||| |||||||| ||||||    
T  26601626 gacacctcactaagggtgctacatcagcgtagaccgagtcaaaattggtcttggggaccaaagctgtcacagatgcaaaacttagggggtggtttt 26601531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 6036770 - 6036723
Alignment:
Q  65 aaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||| | |||||||||||||||| ||||||||||||| |||||||    
T  6036770 aaaattggccttgggggccaaaactgccacatatgcaaaacttagggg 6036723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 929369 - 929419
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||||||||| | |||| ||||||||| || ||||||||||||||||||    
T  929369 gtgccacgtcagcgaagactaagtcaaaagtggcattgggggccaaaactg 929419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 11108897 - 11108947
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||||||||| | |||| ||||||||| || ||||||||||||||||||    
T  11108897 gtgccacgtcagcgaagactaagtcaaaagtggcattgggggccaaaactg 11108947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 28960538 - 28960587
Alignment:
Q  41 tgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||| |||| | ||||||||||||||||||  ||||||||||||||||    
T  28960538 tgccacatcagcgaagaccaagtcaaaattgatcttgggggccaaaactg 28960587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 3377679 - 3377572
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||||  |||||||||||||| | | |||||||| ||||||| ||||||||||| | |||||||||||||||| |||| |||||||| |||||||    
T  3377679 aaaataacatatgacacctcacttagggcgtcacgtcagcgtagaccgagtcaaaattggccttgggggccaaaactgccacaaatgcaaaacttagggg 3377580  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  3377579 gcggtttt 3377572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 17760862 - 17760755
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | ||||||| |||| |||||||||||||||||||| ||||||||||||  |||| ||||||||||| ||||||||||||| |||||||    
T  17760862 aaaataacacgtggcacctcatttagggtgccacgtcagtgtagaccgagtcaaaattgatcttggtggccaaaactgccacatatgcaaaacttagggg 17760763  T
Q  113 gcggtttt 120  Q
    | ||||||    
T  17760762 gtggtttt 17760755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 16298193 - 16298294
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | |||||||||||||||| |||||||| |||||||||||||||||||| |||||| |||||||||| |||| ||||||||  ||||||    
T  16298193 aaaataacacgtggcacctcacttagagtgtcacgtcagcgtagaccaagtcaaaattgatattgggagccaaaactgccacagatgcaaaacatagggg 16298292  T
Q  113 gc 114  Q
    ||    
T  16298293 gc 16298294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 44672490 - 44672383
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | ||| |||||||| |||||||||||| ||||||| | ||||||||||  ||||| |||||||||| ||||||||||||| |||||||    
T  44672490 aaaataacacgtggcacttcacttagggtgccacgtcagcgtagaccgaatcaaaattgatcttgggcgccaaaactgccacatatgcaaaacttagggg 44672391  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  44672390 gcggtttt 44672383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 16874653 - 16874746
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||| |||||||||||| ||||||| ||||||||||| | ||||| |||||||||| |||| |||||||| ||| |||||||||||    
T  16874653 cacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggccttgggagccaaaactgccacagatgcaaaacttatggggcggtttt 16874746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 39642362 - 39642451
Alignment:
Q  31 tcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||| ||||| ||||||  |||||| ||||||||||| | |||||||||||||||| |||| |||||||| |||||||||||||||    
T  39642362 tcacttagggtgccgcgtcagcatagaccgagtcaaaattggctttgggggccaaaactgccacaaatgcaaaacttagggggcggtttt 39642451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 45739099 - 45739006
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||| ||||||||| ||  |||||| ||||||||||||| |||||||||||||||| || | |||||||| ||| |||||||||||    
T  45739099 cacctcacttagggtgccacgttagcatagaccgagtcaaaattgactttgggggccaaaactgccatagatgcaaaacttaaggggcggtttt 45739006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 14978974 - 14978867
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||||| | |||||||||||| ||||||| |||| ||||||||| ||||||||| | || ||||||||||||  ||||  ||||||| |||||||    
T  14978974 aaaataacatgtggcacctcacttagggtgccacatcagcgtagaccaattcaaaattggcctttggggccaaaactaccacaggtgcaaaacttagggg 14978875  T
Q  113 gcggtttt 120  Q
    || |||||    
T  14978874 gcagtttt 14978867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 23220744 - 23220637
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    |||| |||||| | |||||||||||| |||||||||||| ||||||| | |||||||||   |||||||||||||| | ||||| ||||||| ||| |||    
T  23220744 aaaaaaacatgtggcacctcacttagggtgccacgtcagcgtagaccgaatcaaaattggtcttgggggccaaaaccgccacatgtgcaaaacttaaggg 23220645  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  23220644 gcggtttt 23220637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 49426129 - 49426219
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaa 104  Q
    ||||||||| | ||||||| |||||| ||| |||||||| ||||||||||||||||||| |||| ||||||||||||| |||| ||||||||    
T  49426129 aaaataacacgtgacaccttacttagggtgtcacgtcagcgtagaccaagtcaaaattggcatt-ggggccaaaactgccacaaatgcaaaa 49426219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 14190692 - 14190769
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaa 104  Q
    ||||| |||||||||||||| |||| ||||||| ||||||||||| |||||| ||||||||||| |||| ||||||||    
T  14190692 caccttacttagagtgccacatcagcgtagaccgagtcaaaattggcattggaggccaaaactgccacagatgcaaaa 14190769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 1096630 - 1096538
Alignment:
Q  28 acctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||  ||||||||||| ||||||| |||||||||||||  | ||||||||||||| |||| |||| ||| |||| ||||||||||    
T  1096630 acctcacttaggatgccacgtcagcgtagaccgagtcaaaattgaccctaggggccaaaactgccacagatgcgaaacttagagggcggtttt 1096538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 6569658 - 6569750
Alignment:
Q  28 acctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||||||||||||||| ||||||| | |||||||||   ||| |||||||||||| |||| ||| |||| ||| |||||||||||    
T  6569658 acctcacttagagtgccacgtcagcgtagaccgaatcaaaattggtcttgagggccaaaactgccacaaatgtaaaacttaaggggcggtttt 6569750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 25486391 - 25486281
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | ||||||| |||| |||||||||||| ||||||| ||||||||||||  || ||||||||||| | |||| |||||||| |||| ||    
T  25486391 aaaataacacgtggcacctcatttagggtgccacgtcagcgtagaccgagtcaaaattgaacttaggggccaaaac-gccacagatgcaaaacttagagg 25486293  T
Q  113 gcggttttatag 124  Q
    ||| ||||||||    
T  25486292 gcgattttatag 25486281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 5287377 - 5287454
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaa 104  Q
    |||||||||||| |||||||||||| || |||| ||||||||||||| || |||||||||||   |||||||||||||    
T  5287377 cacctcacttagggtgccacgtcagcgtggaccgagtcaaaattgaccttcggggccaaaacatccacatatgcaaaa 5287454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 7060776 - 7060849
Alignment:
Q  14 aaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaa 87  Q
    |||||||| | | |||||||||||| |||||||||||||||||||| ||||||||||||  ||||| |||||||    
T  7060776 aaataacacgcggcacctcacttagggtgccacgtcagtgtagaccgagtcaaaattgatcttgggtgccaaaa 7060849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 25085530 - 25085611
Alignment:
Q  14 aaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacaca 95  Q
    |||||||| | | |||||||||||| ||||||||||||||||||||  |||||||||||  ||| |||||||||||| ||||    
T  25085530 aaataacacgtggcacctcacttagggtgccacgtcagtgtagaccgggtcaaaattgatcttgagggccaaaactgccaca 25085611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 41997791 - 41997876
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    |||||||||||| ||| |||||||| ||||||| ||||||||||| | |||| ||||||||||| |||| |||||||  |||||||    
T  41997791 cacctcacttagggtgtcacgtcagcgtagaccgagtcaaaattggccttggaggccaaaactgccacagatgcaaagcttagggg 41997876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 50401534 - 50401442
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    ||||||| |||  ||| |||||||| ||||||| ||||||||||| | |||||| ||||||||| |||| |||||||| |||||||||||||||    
T  50401534 cacctcatttaaggtgtcacgtcagagtagaccgagtcaaaattggccttgggg-ccaaaactgtcacaaatgcaaaacttagggggcggtttt 50401442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 7579842 - 7579735
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    |||| |||||| | |||||||||||| |||||| ||||| ||||||| ||||||||||  | |||||||| |||| || ||||  ||||||| |||| ||    
T  7579842 aaaaaaacatgtggcacctcacttagggtgccatgtcagcgtagaccgagtcaaaattagctttgggggcaaaaattgccacaagtgcaaaacttagcgg 7579743  T
Q  113 gcggtttt 120  Q
    ||||||||    
T  7579742 gcggtttt 7579735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 12960981 - 12961080
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    |||| |||||| | || ||||||||| ||| |||||||| ||||||| ||||||||||| | || || |||||||||| ||||  |||||||||||||||    
T  12960981 aaaagaacatgtggcatctcacttagggtgtcacgtcagcgtagaccgagtcaaaattggcctttggagccaaaactgccacagttgcaaaatttagggg 12961080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 30849366 - 30849473
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | |||||||||||| |||  |||||||  |||||||||| ||||||| | ||| |||||||||||  |||| |||||||| |||||||    
T  30849366 aaaataacacgtggcacctcacttagggtgttacgtcagcatagaccaagttaaaattggccttgtgggccaaaactatcacagatgcaaaacttagggg 30849465  T
Q  113 gcggtttt 120  Q
     |||||||    
T  30849466 acggtttt 30849473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 32295089 - 32295196
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | ||||||| |||| |||||||||| | ||||||| ||| ||||||| | |||||||||||||||| |||| ||| |||| ||||| |    
T  32295089 aaaataacacgtggcacctcatttagggtgccacgtccgggtagaccgagttaaaattggctttgggggccaaaactgtcacaaatgtaaaacttaggtg 32295188  T
Q  113 gcggtttt 120  Q
    | ||||||    
T  32295189 gtggtttt 32295196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 20224682 - 20224775
Alignment:
Q  28 acctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggttttat 122  Q
    |||||| |||| |||||||||||| ||||||  ||||||||||| ||||| |||||||||||| |||| || |||||  ||||||| ||||||||    
T  20224682 acctcatttagggtgccacgtcagcgtagacagagtcaaaattgtcattgagggccaaaactgccaca-atacaaaacataggggggggttttat 20224775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 48319581 - 48319479
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | ||||||||||||  ||||||||||| || ||   ||||||||||||| ||||||| |||||||| || | |||||||||||| |||    
T  48319581 aaaataacacgtggcacctcacttaggatgccacgtcagcgttgatagagtcaaaattgaccttgggggtcaaaactgtcatagatgcaaaatttatggg 48319482  T
Q  113 gcg 115  Q
    |||    
T  48319481 gcg 48319479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 5225516 - 5225565
Alignment:
Q  41 tgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    ||||||||||| | ||||||||||||||||||| ||||||||||||||||    
T  5225516 tgccacgtcagcgaagaccaagtcaaaattgaccttgggggccaaaactg 5225565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 27 - 119
Target Start/End: Original strand, 50226541 - 50226633
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggttt 119  Q
    |||||||||||| |||||||||||| ||||||| |||||| |||  | || |||||||||||||  |||  ||||||| |||| |||||||||    
T  50226541 cacctcacttagggtgccacgtcagcgtagaccgagtcaatattagccttcggggccaaaactgctacaggtgcaaaacttagagggcggttt 50226633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 8301497 - 8301588
Alignment:
Q  29 cctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    ||||| |||| ||| |||||||| |||||   |||||||||||   ||||||| |||||||| |||| |||||||||||||||| |||||||    
T  8301497 cctcaattagggtgtcacgtcagcgtagattgagtcaaaattggtcttgggggtcaaaactgccacagatgcaaaatttaggggacggtttt 8301588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 16545724 - 16545637
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggc 114  Q
    |||||||||||| |||| |||||||  |||||| ||||||||||  |||||||||| ||||||| || | |||||||| ||| |||||    
T  16545724 cacctcacttagggtgctacgtcagcatagaccgagtcaaaattaccattgggggcaaaaactgtcatagatgcaaaacttaaggggc 16545637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 46572988 - 46572897
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    |||||||||||| ||  ||| |||| ||||||||||||||||||| | ||||||  | |||||| |||| |||||||| ||||||| |||||||    
T  46572988 cacctcacttagggtctcacatcagcgtagaccaagtcaaaattggccttgggg--ccaaactgccacaaatgcaaaacttaggggacggtttt 46572897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 44436920 - 44436836
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    |||||||||||| |||| |||| || ||||| | ||||||||||||| ||||||| |||||||| ||||  ||||||| |||||||    
T  44436920 cacctcacttagggtgcgacgtaagcgtagatcgagtcaaaattgaccttggggg-caaaactgtcacaagtgcaaaacttagggg 44436836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 46912341 - 46912418
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaa 104  Q
    ||||||| |||| |||||||||||| ||| ||  ||||||||||| |||| ||||||||||||| || | ||||||||    
T  46912341 cacctcatttagggtgccacgtcagcgtaaacagagtcaaaattggcattaggggccaaaactgccatagatgcaaaa 46912418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 18632479 - 18632392
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggc 114  Q
    ||||||| |||| |||  ||||||| ||||| | ||||||||||||   ||||||||||||||| |||| |||||||| |||| ||||    
T  18632479 cacctcatttagggtgttacgtcagcgtagatcgagtcaaaattgatcctgggggccaaaactgtcacaaatgcaaaacttagagggc 18632392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 22182536 - 22182486
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||||||||| | |||| ||||||||| |||| ||||||||||||||||    
T  22182536 gtgccacgtcagcgaagactaagtcaaaagtgactttgggggccaaaactg 22182486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 23891802 - 23891858
Alignment:
Q  44 cacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgc 100  Q
    |||||||| ||||||| |||||||||||   ||||| |||||||||| |||||||||    
T  23891802 cacgtcagcgtagaccgagtcaaaattggtcttgggagccaaaactgccacatatgc 23891858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 77039 - 76937
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | |||||||||||||| |||||||||||| ||||||| ||||||||||| | ||||||| |||||||| |||| |||||||| |||||||    
T  77039 aaaataacacgtgacacctcacttagggtgccacgtcagcgtagaccgagtcaaaattggccttggggg-caaaactgccacaaatgcaaaacttagggg 76941  T
Q  113 gcgg 116  Q
    ||||    
T  76940 gcgg 76937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 569 - 474
Alignment:
Q  25 gacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    ||||||||| |||| ||||||||||||| |||||| |||||||||||   |||||||||||||||| |||||||| |||| |||||||| ||||||    
T  569 gacacctcatttagggtgccacgtcagtatagaccgagtcaaaattggtcttgggggccaaaactgccacatatgtaaaacttagggggtggtttt 474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 46228 - 46318
Alignment:
Q  30 ctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    ||||||||| |||||||||||| ||||||  ||||||||||||| |||||||||||||||| |||| |||||||| |||| |||| |||||    
T  46228 ctcacttagggtgccacgtcagcgtagactgagtcaaaattgaccttgggggccaaaactgtcacagatgcaaaacttagagggcagtttt 46318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 3236 - 3143
Alignment:
Q  30 ctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggttttata 123  Q
    ||||||||| |||||||||||| ||||||| ||||||||||||| ||| ||||||||| || |||| |||||||| |||| || ||||||||||    
T  3236 ctcacttagggtgccacgtcagcgtagaccgagtcaaaattgaccttgagggccaaaattgccacaaatgcaaaacttagaggacggttttata 3143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 145531 - 145428
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||| | | |||||||||||| || ||| |||||  |||||| ||||||||||| | |||||||||||||||| |||| |||||||||||| |||    
T  145531 aaaataacacgtggcacctcacttagggttccatgtcagcctagaccgagtcaaaattggccttgggggccaaaactgccacagatgcaaaatttaaggg 145432  T
Q  113 gcgg 116  Q
    ||||    
T  145431 gcgg 145428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 20079 - 19995
Alignment:
Q  25 gacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttag 109  Q
    |||||||||||||| ||||||||| || ||||| | ||||||||||| | |||||||||||||||| |||| |||||||| ||||    
T  20079 gacacctcacttagggtgccacgttagcgtagatcgagtcaaaattggctttgggggccaaaactgccacagatgcaaaacttag 19995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 9503 - 9425
Alignment:
Q  25 gacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaa 103  Q
    ||||||||||||||  ||||||||||| ||||||| ||||||||||||  |||||||||||||||  ||||| ||||||    
T  9503 gacacctcacttaggatgccacgtcagcgtagaccgagtcaaaattgatcttgggggccaaaactaccacatgtgcaaa 9425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 25050 - 25142
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    ||||||||||||||||||||||||| | ||| | |||||||||||   || ||||||||||||  | ||||||||||| |||||||||||||||    
T  25050 cacctcacttagagtgccacgtcagcgaagatcgagtcaaaattg-gttttggggccaaaactaccgcatatgcaaaacttagggggcggtttt 25142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 9558 - 9482
Alignment:
Q  44 cacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    ||||||||  |||||| ||||||||||| | |||||||| ||||||| ||||||||||||| ||||||| |||||||    
T  9558 cacgtcagcctagaccgagtcaaaattggccttgggggctaaaactgccacatatgcaaaacttaggggacggtttt 9482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 19180 - 19272
Alignment:
Q  28 acctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggtttt 120  Q
    ||||||| ||| |||| | ||||| ||||||| || |||||||| | |||||||||||||||  ||||| ||||||| |||||||||||||||    
T  19180 acctcacgtagggtgctatgtcagcgtagaccgagccaaaattggccttgggggccaaaactaccacatgtgcaaaacttagggggcggtttt 19272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 63186 - 63133
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgaca 93  Q
    |||||||||||| | ||||||||||||||||||  |||||||||||||||||||    
T  63186 gtgccacgtcagcgaagaccaagtcaaaattgatcttgggggccaaaactgaca 63133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2010 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold2010
Description:

Target: scaffold2010; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 646 - 594
Alignment:
Q  38 gagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||||||||||| | |||| ||||||||| |||||||||||||||||||||    
T  646 gagtgccacgtcagggaagactaagtcaaaagtgacattgggggccaaaactg 594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0372 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0372
Description:

Target: scaffold0372; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 286 - 204
Alignment:
Q  27 cacctcacttagagtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagg 110  Q
    |||||||||||| ||| |||||||||||||||| ||||||||||  | || | ||||||||||| ||||  |||||||||||||    
T  286 cacctcacttagggtgtcacgtcagtgtagaccgagtcaaaattcgcctt-gtggccaaaactgccacaagtgcaaaatttagg 204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 203360 - 203411
Alignment:
Q  61 agtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggg 112  Q
    ||||||||||||| |||||||||||||||| |||| |||||||| |||||||    
T  203360 agtcaaaattgactttgggggccaaaactgtcacaaatgcaaaacttagggg 203411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 9704 - 9783
Alignment:
Q  44 cacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactgacacatatgcaaaatttagggggcggttttatag 124  Q
    |||||||| ||||| | |||||||||||   |||||| ||||||||| |||  ||||||||||||||||||| ||||||||    
T  9704 cacgtcagcgtagaacgagtcaaaattggtcttgggg-ccaaaactgccaccgatgcaaaatttagggggcgattttatag 9783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1301 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold1301
Description:

Target: scaffold1301; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 90
Target Start/End: Original strand, 1225 - 1260
Alignment:
Q  55 agaccaagtcaaaattgacattgggggccaaaactg 90  Q
    ||||||||||||||||| ||||||||||||||||||    
T  1225 agaccaagtcaaaattggcattgggggccaaaactg 1260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 21834 - 21776
Alignment:
Q  13 aaaataacatgggacacctcacttagagtgccacgtcagtgtagaccaagtcaaaattg 71  Q
    ||||||||| | |||| ||||||| | |||||||||||| ||||||| |||||||||||    
T  21834 aaaataacacgtgacaactcacttggggtgccacgtcagcgtagaccgagtcaaaattg 21776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 157424 - 157374
Alignment:
Q  40 gtgccacgtcagtgtagaccaagtcaaaattgacattgggggccaaaactg 90  Q
    |||||||||||| | |||| ||||||||| || ||||||||||||||||||    
T  157424 gtgccacgtcagcgaagactaagtcaaaagtggcattgggggccaaaactg 157374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 93965 - 93925
Alignment:
Q  28 acctcacttagagtgccacgtcagtgtagaccaagtcaaaa 68  Q
    ||||||||||| |||||||||||| ||||||| ||||||||    
T  93965 acctcacttagggtgccacgtcagcgtagaccgagtcaaaa 93925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University