View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13659_high_4 (Length: 360)

Name: NF13659_high_4
Description: NF13659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13659_high_4
NF13659_high_4
[»] chr5 (10 HSPs)
chr5 (30-359)||(13447067-13447396)
chr5 (42-359)||(13419516-13419833)
chr5 (97-359)||(13426407-13426669)
chr5 (85-347)||(13413183-13413445)
chr5 (116-236)||(13388988-13389108)
chr5 (116-237)||(13385167-13385288)
chr5 (116-236)||(13454143-13454263)
chr5 (290-344)||(13454035-13454089)
chr5 (283-356)||(13393562-13393635)
chr5 (124-198)||(13393403-13393477)
[»] chr4 (2 HSPs)
chr4 (270-344)||(47601353-47601427)
chr4 (127-167)||(47601530-47601570)


Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 30 - 359
Target Start/End: Complemental strand, 13447396 - 13447067
Alignment:
Q  30 tgagtcaatcaaaagaaacgagtagaaaataattgctcaatttggttataactaatgtaataaatataggcacgaacttacgggtgtagtaacagaggtg 129  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447396 tgagtcaatcaaaagaaacgagtagaaaataattgctcaatttcgttataactaatgtaataaatataggcacgaacttacgggtgtagtaacagaggtg 13447297  T
Q  130 ggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgaga 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13447296 ggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgcgaaaattgtgccgacgatattgaga 13447197  T
Q  230 attactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactt 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447196 attactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactt 13447097  T
Q  330 tgtgattcgcattcctgatagcttacctct 359  Q
    ||||||||||||||||||||||||||||||    
T  13447096 tgtgattcgcattcctgatagcttacctct 13447067  T

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Target: chr5; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 42 - 359
Target Start/End: Complemental strand, 13419833 - 13419516
Alignment:
Q  42 aagaaacgagtagaaaataattgctcaatttggttataactaatgtaataaatataggcacgaacttacgggtgtagtaacagaggtgggaagcaaagta 141  Q
    |||||| |||||| ||||||||| |||||||| |||||| | || ||||||||  ||||| |||||| ||||| ||||||| ||||| ||||||||||||    
T  13419833 aagaaatgagtagtaaataattgttcaatttgtttataatttatttaataaatgcaggcatgaacttgcgggtatagtaaccgaggttggaagcaaagta 13419734  T
Q  142 aaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattactgcacca 241  Q
     ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||  |||||||||| |||||| |||||||||||||| | |    
T  13419733 gaaaagtttaaagttggagacaaagttggtgtgggatacatggttgattcatgtcgttcatgccaaaattgtgctgacgatcttgagaattactgcccaa 13419634  T
Q  242 aatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcat 341  Q
     || |||    ||||    ||  |||| ||||||||||||  |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13419633 catttacagtcacatgtggtgcaaagtatcgtgatggcaccgtcacatatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcat 13419534  T
Q  342 tcctgatagcttacctct 359  Q
    ||||||||||||||||||    
T  13419533 tcctgatagcttacctct 13419516  T

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Target: chr5; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 97 - 359
Target Start/End: Complemental strand, 13426669 - 13426407
Alignment:
Q  97 aggcacgaacttacgggtgtagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtc 196  Q
    ||||| |||||| ||||| | ||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13426669 aggcatgaacttgcgggtattgtaacagaggttggaagcaaagtagaaaagtttaaagttggagacaaagtaggagtgggatacatggttgattcatgtc 13426570  T
Q  197 gttcttgtgaaaattgtgccgacgatattgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggagg 296  Q
    |||| || ||||||||||| || ||| |||||||||||||| || || | ||    ||||    || ||||| |||||||||||   |||| ||||||||    
T  13426569 gttcatgcgaaaattgtgcggaagatcttgagaattactgcccccaacaaacagttacatgtggtgctaagtatcgtgatggcagcgtcacatatggagg 13426470  T
Q  297 tttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctct 359  Q
    ||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13426469 ttattccgactcaatggttgcagatgagcactttgtgattcgcattcctgatagcttacctct 13426407  T

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Target: chr5; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 85 - 347
Target Start/End: Complemental strand, 13413445 - 13413183
Alignment:
Q  85 tgtaataaatataggcacgaacttacgggtgtagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatgg 184  Q
    ||||||||||| ||||| || ||| ||||| |||||||||| || |||||||||||  | |||||||||||||||||||||||||| || || ||| ||     
T  13413445 tgtaataaatacaggcatgagcttgcgggtatagtaacagaagtaggaagcaaagtggagaagtttaaagttggagacaaagtaggtgttggctacttga 13413346  T
Q  185 ttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactat 284  Q
    ||||||||||||| || ||  || |||||   ||| || |||||||||||||| |||||| |      ||||    ||  |||| ||||||||| ||  |    
T  13413345 ttgattcatgtcgatcatgccaagattgtaatgacaatcttgagaattactgccccaaatttgtagtcacatgtggtgccaagtatcgtgatggaaccgt 13413246  T
Q  285 cacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctga 347  Q
    ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13413245 cacttatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcattcctga 13413183  T

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Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 116 - 236
Target Start/End: Original strand, 13388988 - 13389108
Alignment:
Q  116 tagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgc 215  Q
    |||| ||| ||||||||||||||||| ||||||| || ||||||||||||||||| || || |||||||||||||||||||| || ||| |||||||||     
T  13388988 tagtgacaaaggtgggaagcaaagtagaaaagttcaatgttggagacaaagtaggtgttggctacatggttgattcatgtcgatcatgtcaaaattgtgt 13389087  T
Q  216 cgacgatattgagaattactg 236  Q
     ||| || |||| ||||||||    
T  13389088 tgacaatcttgaaaattactg 13389108  T

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Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 237
Target Start/End: Original strand, 13385167 - 13385288
Alignment:
Q  116 tagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgc 215  Q
    |||| ||| ||||||||||||||||| ||||||| || ||||||||||||||||| || || |||||  ||||||||||||| || ||| |||||||||     
T  13385167 tagtgacaaaggtgggaagcaaagtagaaaagttcaatgttggagacaaagtaggtgttggctacataattgattcatgtcgatcgtgtcaaaattgtgt 13385266  T
Q  216 cgacgatattgagaattactgc 237  Q
     ||| || |||| |||||||||    
T  13385267 tgacaatcttgaaaattactgc 13385288  T

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Target: chr5; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 116 - 236
Target Start/End: Complemental strand, 13454263 - 13454143
Alignment:
Q  116 tagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgc 215  Q
    |||| ||||| |||||||||||||| |||||||| ||||||||||||| |||||| ||||||| | |||||||||| ||||  || ||| |||||||||     
T  13454263 tagttacagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattcttgtcactcatgtcaaaattgtgt 13454164  T
Q  216 cgacgatattgagaattactg 236  Q
     ||  || |||||||||||||    
T  13454163 tgataatcttgagaattactg 13454143  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 344
Target Start/End: Complemental strand, 13454089 - 13454035
Alignment:
Q  290 atggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcc 344  Q
    ||||||| ||||| |||||||||||| | ||||||||||||||| ||||||||||    
T  13454089 atggaggcttctctgactcaatggtttccgacgagcactttgtgtttcgcattcc 13454035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 356
Target Start/End: Original strand, 13393562 - 13393635
Alignment:
Q  283 atcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacc 356  Q
    ||||| |||||||| | ||| ||||||||||||||||| ||||||||| |  ||| |||||||||| |||||||    
T  13393562 atcacatatggagggtactctgactcaatggttgcagatgagcactttatagttcacattcctgatggcttacc 13393635  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 198
Target Start/End: Original strand, 13393403 - 13393477
Alignment:
Q  124 gaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgt 198  Q
    ||||| |||||||||||| | ||||| ||| ||||||||||||| || ||||||| | | |||||||| ||||||    
T  13393403 gaggtaggaagcaaagtagagaagttcaaaattggagacaaagtgggtgtgggatgcttagttgattcgtgtcgt 13393477  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 47601427 - 47601353
Alignment:
Q  270 tcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcc 344  Q
    |||||||||||| | ||| || ||||||| ||| ||||||||||||| |||||||||||||||| ||| ||||||    
T  47601427 tcgtgatggcaccaccacatacggaggttactctgactcaatggttgtagacgagcactttgtggttcacattcc 47601353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 47601570 - 47601530
Alignment:
Q  127 gtgggaagcaaagtaaaaaagtttaaagttggagacaaagt 167  Q
    ||||||||||||||| ||||||| |||||||||||||||||    
T  47601570 gtgggaagcaaagtagaaaagttcaaagttggagacaaagt 47601530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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