View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13659_high_7 (Length: 342)
Name: NF13659_high_7
Description: NF13659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13659_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 1445546 - 1445302
Alignment:
| Q |
1 |
cacaagaaaatggtcagagaatatagaacagaacattaactacacaagaaattaacacaggtgaaaattcattcaactcagcttggaattgcaaaagatc |
100 |
Q |
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| T |
1445546 |
cacaagaaaatggtcagagaatatagaacagaacattaactacacaagaaattaacacaggtgaaaattcattcaactcagcttggaattgcaaaagatc |
1445447 |
T |
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| Q |
101 |
aattatttataaccagagttctgtcaactgaatcgttaactaactcatgattaaccgattctacatctaacgcacttaatgaactgatgattaactgctt |
200 |
Q |
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| T |
1445446 |
aattatttataaccagagttctgtcaactggatcgttaactaactcatgattaaccgattctacatctaacgcacttaatgaactgatgattaactgctt |
1445347 |
T |
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| Q |
201 |
gtaacaaacctccaaattcttcacaattgacatacacttcaatag |
245 |
Q |
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| T |
1445346 |
gtaacaaacctccaaattcttcacaattgacatacacttcaatag |
1445302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 331
Target Start/End: Complemental strand, 1445249 - 1445216
Alignment:
| Q |
298 |
cagtgaagttttgaaaatattgattcagtataat |
331 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
1445249 |
cagtgaagttttgaaaatattgattcagtataat |
1445216 |
T |
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