View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1365_high_15 (Length: 433)
Name: NF1365_high_15
Description: NF1365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1365_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 98 - 417
Target Start/End: Original strand, 7824252 - 7824556
Alignment:
| Q |
98 |
tcccaatcatcatcttcgccgtttcaccacaagattcaaagcaaatttcaacagaaccatcaatggaaacatcataagaggacattagtttatccttttc |
197 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7824252 |
tcccgatcatcatctccgccgtttcaccacaagattcaaagcaaatttgaacagaaccatcaatggaaacatcataagaggacattagtttatccttttc |
7824351 |
T |
|
| Q |
198 |
tgnnnnnnnnatatcagcagtagttgctgcttctgtttttgcagcatgccatttgtgttggcttttgtttcctgctatgggtttactgctagttaggctc |
297 |
Q |
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|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
7824352 |
tg-ttttttgatatcagcagtagttgttgcttctgtttttgcagcatgccatttgtgttggcttttgtttcctgctat-ggttta-------------tc |
7824436 |
T |
|
| Q |
298 |
ttagtttttgctttttcctccttgcccccatcttgtttaattttggtcgacataatataagctgattnnnnnnnnnttgttccttttagaattaaccgag |
397 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7824437 |
ttagttttttctttttcctccttgcccccatcttgtttaattttggtcgacataatataagctgattaaaaaaaaattgttccttttagaattaaccgag |
7824536 |
T |
|
| Q |
398 |
tgaacccacccgattatcca |
417 |
Q |
| |
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|||||||||||||||||||| |
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| T |
7824537 |
tgaacccacccgattatcca |
7824556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 208 - 413
Target Start/End: Original strand, 18299223 - 18299436
Alignment:
| Q |
208 |
atatcagcagtagttgctgcttctgtttttgcagcatgcca-tttgtgttggcttttgtttcctgctatgggtttactgctagttaggctcttagttttt |
306 |
Q |
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||||||||| || |||| ||||| |||||||| || | || ||||||||| |||||||||||| |||| | ||||||||||||||| |||| |||||| |
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| T |
18299223 |
atatcagcaataactgctacttctatttttgcaacagggcagtttgtgttg-cttttgtttccta-tatgaggttactgctagttaggttcttcgttttt |
18299320 |
T |
|
| Q |
307 |
gctttttcctccttgcccc--------catcttgtttaattttggtcgacataatataagctgattnnnnnnnnntt-gttccttttagaattaaccgag |
397 |
Q |
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|||||||||| | |||||| ||||||||||||||||||| ||||||| ||||||||||| || | | ||||||||||||||||| |
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| T |
18299321 |
gctttttccttcatgccccatcttgtacatcttgtttaattttggtggacataacataagctgattaaaaaaaaattagccctttttagaattaaccgag |
18299420 |
T |
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| Q |
398 |
tgaacccacccgatta |
413 |
Q |
| |
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|||||||||||||||| |
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| T |
18299421 |
tgaacccacccgatta |
18299436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 212 - 325
Target Start/End: Complemental strand, 25967806 - 25967688
Alignment:
| Q |
212 |
cagcagtagttgctgcttctgtttttgcagcatg-ccatttgtgttggct----tttgtttcctgctatgggtttactgctagttaggctcttagttttt |
306 |
Q |
| |
|
||||||||| |||||||||||||||||||||| | || |||||||||||| |||| |||||| |||||| ||||||||||| |||| ||| | ||| |
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| T |
25967806 |
cagcagtagctgctgcttctgtttttgcagcagggccgtttgtgttggctgttttttggttcctgatatggggttactgctagtcaggccctttttattt |
25967707 |
T |
|
| Q |
307 |
gctttttcctccttgcccc |
325 |
Q |
| |
|
|||||||||||||||||| |
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| T |
25967706 |
tctttttcctccttgcccc |
25967688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 413
Target Start/End: Original strand, 5382020 - 5382140
Alignment:
| Q |
301 |
gtttttgctttttcctccttgcccc--------catcttgtttaattttggtcgacataatataagctgattnnnnnnnnnttgttccttttagaattaa |
392 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||| | | | |||||||||||| |
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| T |
5382020 |
gtttttgctttttcctccttgccccatcttgtacatcttgtttaattttggtggacataacataagctgattaaaaaaaattggccctttttagaattaa |
5382119 |
T |
|
| Q |
393 |
ccgagtgaacccacccgatta |
413 |
Q |
| |
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||||||||||||||||||||| |
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| T |
5382120 |
ccgagtgaacccacccgatta |
5382140 |
T |
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