View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1365_high_16 (Length: 402)

Name: NF1365_high_16
Description: NF1365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1365_high_16
NF1365_high_16
[»] chr1 (16 HSPs)
chr1 (9-373)||(27215340-27215704)
chr1 (80-373)||(27221302-27221595)
chr1 (80-278)||(27443248-27443443)
chr1 (289-373)||(27207969-27208053)
chr1 (289-373)||(27433049-27433133)
chr1 (280-373)||(27443468-27443561)
chr1 (118-278)||(27208086-27208246)
chr1 (80-278)||(27433166-27433367)
chr1 (289-356)||(27410236-27410303)
chr1 (291-356)||(27415756-27415821)
chr1 (187-278)||(27455314-27455409)
chr1 (293-369)||(27455201-27455277)
chr1 (302-373)||(27389263-27389334)
chr1 (9-60)||(27443191-27443241)
chr1 (139-181)||(27390262-27390304)
chr1 (139-181)||(27410497-27410539)


Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 9 - 373
Target Start/End: Complemental strand, 27215704 - 27215340
Alignment:
Q  9 agcagagagcaacttcatcaaatcaccttcacacaacaaactacaatcgaaaaactctcactaattaatatatattcacaagcctgcaaaacaagattaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27215704 agcagagagcaacttcatcaaatcaccttcacacaacaaactacaatcgaaaaactctcactaattaatatatattcacaagcctgcaaaacaagattaa 27215605  T
Q  109 tcaaaagccatatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacggtacgtacatatatcaatacataactacat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27215604 tcaaaagccatatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacggtacgtacatatatcaatacataactacat 27215505  T
Q  209 taattttccatataattaatcaattcacttagctaagttaatttctcttcatgcgcttaataaattcattcgtatttgtatatgcagtggttggaggagc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  27215504 taattttccatataattaatcaattcacttagctaagttaatttctcttcatgcgcttactaaattcatttgtatttgtatatgcagtggttggaggagc 27215405  T
Q  309 taaggtgacattcacaaataggtgtgaatacactgtatggccaggaacattaactggagaccaaa 373  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  27215404 taaggtgacgttcacaaataggtgtgaatacactgtatggccaggaacgttaaccggagaccaaa 27215340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 80 - 373
Target Start/End: Complemental strand, 27221595 - 27221302
Alignment:
Q  80 atattcacaagcctgcaaaacaagattaatcaaaagccatatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacgg 179  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||    
T  27221595 atattcacaagcctgcaaaacaagattcatcaaaagccatatccaaaatgacaagcacccgcgttgctctatgccttagttttgcattcctcttctatgg 27221496  T
Q  180 tacgtacatatatcaatacataactacattaattttccatataattaatcaattcacttagctaagttaatttctcttcatgcgcttaataaattcattc 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  27221495 tacgtacatatatcaatacataactacattaattttccatataattaatcaattcacttagctaagttaatttctcttcatgcgcttattaaattcattt 27221396  T
Q  280 gtatttgtatatgcagtggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacattaactggagaccaaa 373  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  27221395 gtatttgtatatgcagtggttggaggagctaaggtgactttcacaaataggtgtgaatacactgtatggccaggaacgttaaccggagaccaaa 27221302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 80 - 278
Target Start/End: Original strand, 27443248 - 27443443
Alignment:
Q  80 atattcacaagcctgcaaaacaagattaatcaaaagccatatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacgg 179  Q
    ||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||    
T  27443248 atattcacaagcctgcaaaacaagattcatcaa--gccatatccaaaatgacaagcactcgtgttgctctatgccttagttttgcattcctcttctatgg 27443345  T
Q  180 tacgtacatatatcaatacataactacattaatt---ttccatataattaatcaattcacttagctaagttaatttctcttcatgcgcttaataaattca 276  Q
    ||     |||||||| |||  |||||||||||||   |||||||| ||||||||||||| |||||||||| ||||| ||||| |||||||||||||||||    
T  27443346 tat----atatatcactactcaactacattaattaatttccatatgattaatcaattcatttagctaagtaaatttttcttcttgcgcttaataaattca 27443441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 27208053 - 27207969
Alignment:
Q  289 tatgcagtggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacattaactggagaccaaa 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  27208053 tatgcagtggttggaggagctaaggtgacattcacaaataggtgtgcatacactgtatggccaggaacgttaactggagaccaaa 27207969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 27433133 - 27433049
Alignment:
Q  289 tatgcagtggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacattaactggagaccaaa 373  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  27433133 tatgcagcggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccgggaacgttaactggagaccaaa 27433049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 280 - 373
Target Start/End: Original strand, 27443468 - 27443561
Alignment:
Q  280 gtatttgtatatgcagtggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacattaactggagaccaaa 373  Q
    |||||| | |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  27443468 gtatttctttatgcagttgttggaggagctaaggtgacgttcacaaataggtgtgaatacactgtatggccaggaacgttaaccggagaccaaa 27443561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 118 - 278
Target Start/End: Complemental strand, 27208246 - 27208086
Alignment:
Q  118 atatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacggtacgtacatatatcaatacataactacattaattttcc 217  Q
    |||||||||||||   ||| |||||||||| | ||| |||| ||||||||||||||||| ||||     |||||||| |||  |||||||||||||||||    
T  27208246 atatccaaaatgaagtgcaaccgtgttgctttatgctttagctttgcattcctcttctatggtat----atatatcagtactcaactacattaattttcc 27208151  T
Q  218 atataattaatc----aattcacttagctaagttaatttctcttcatgcgcttaataaattcatt 278  Q
    ||||| ||||||    |||||| |||||| |||| ||||||||||||| | ||||||||||||||    
T  27208150 atatagttaatccattaattcatttagcttagtttatttctcttcatgtggttaataaattcatt 27208086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 80 - 278
Target Start/End: Complemental strand, 27433367 - 27433166
Alignment:
Q  80 atattcacaagcctgcaaaacaagattaatcaaaagccatatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacgg 179  Q
    |||||||||||||||||||||||||||||||  ||| ||||||||||||||  | ||||| ||||||| | ||| |||| || |||||||||||||| ||    
T  27433367 atattcacaagcctgcaaaacaagattaatc--aagtcatatccaaaatgaagaacacccatgttgctttatgctttagcttggcattcctcttctatgg 27433270  T
Q  180 tacgtacatatatcaata--cat--aactacattaattttccata----taattaatcaattcacttagctaagttaatttctcttcatgcgcttaataa 271  Q
    ||   | |||||||| ||  |||  ||||||||||||||||||||    |||| ||| |||||| |||||| | || ||| ||||||||| | |||||||    
T  27433269 ta---atatatatcagtactcattcaactacattaattttccatatagttaataaattaattcatttagcttattttattcctcttcatgtggttaataa 27433173  T
Q  272 attcatt 278  Q
    |||||||    
T  27433172 attcatt 27433166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 289 - 356
Target Start/End: Complemental strand, 27410303 - 27410236
Alignment:
Q  289 tatgcagtggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaac 356  Q
    |||||||||||||||||||| |||||||||||||| ||||| |||| ||| |||||||||||||||||    
T  27410303 tatgcagtggttggaggagccaaggtgacattcacgaatagatgtggatatactgtatggccaggaac 27410236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 27415756 - 27415821
Alignment:
Q  291 tgcagtggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaac 356  Q
    ||||| |||||||||||| |||||||||||||| ||||| |||| |||||||||||||||||||||    
T  27415756 tgcagaggttggaggagccaaggtgacattcacgaatagatgtgtatacactgtatggccaggaac 27415821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 187 - 278
Target Start/End: Complemental strand, 27455409 - 27455314
Alignment:
Q  187 atatatcaatacataactacattaattttccatat----aattaatcaattcacttagctaagttaatttctcttcatgcgcttaataaattcatt 278  Q
    ||||||||||||  |||||||||||||||||||||    ||| ||| |||||| |||||| |||| ||| ||||||||| | ||||||||||||||    
T  27455409 atatatcaatacccaactacattaattttccatatagtaaatcaattaattcatttagcttagtttattgctcttcatgtggttaataaattcatt 27455314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 293 - 369
Target Start/End: Complemental strand, 27455277 - 27455201
Alignment:
Q  293 cagtggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacattaactggagac 369  Q
    |||| |||||||||||||||||||||||||| |||| ||||||||| | |||||| | || ||| |||||| |||||    
T  27455277 cagtagttggaggagctaaggtgacattcaccaataagtgtgaataaattgtatgactagaaacgttaactagagac 27455201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 373
Target Start/End: Complemental strand, 27389334 - 27389263
Alignment:
Q  302 gaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacattaactggagaccaaa 373  Q
    ||||||| | ||| |||||||| ||||| |||| |||||| |||||||||||||| ||||| ||||||||||    
T  27389334 gaggagccacggtaacattcacgaatagatgtggatacaccgtatggccaggaaccttaaccggagaccaaa 27389263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 27443191 - 27443241
Alignment:
Q  9 agcagagagcaacttcatcaaatcaccttcacacaacaaactacaatcgaaa 60  Q
    |||||||| |||||||||||| ||||||||| ||| ||||||||||||||||    
T  27443191 agcagagaacaacttcatcaa-tcaccttcaaacagcaaactacaatcgaaa 27443241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 27390304 - 27390262
Alignment:
Q  139 cgtgttgctctgtgccttagttttgcattcctcttctacggta 181  Q
    ||||||||||| |||||||| ||||||||||||||||| ||||    
T  27390304 cgtgttgctctctgccttagctttgcattcctcttctatggta 27390262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 27410539 - 27410497
Alignment:
Q  139 cgtgttgctctgtgccttagttttgcattcctcttctacggta 181  Q
    ||||||||||| |||||||| ||||||||||||||||| ||||    
T  27410539 cgtgttgctctctgccttagctttgcattcctcttctatggta 27410497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University