View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1365_high_25 (Length: 258)
Name: NF1365_high_25
Description: NF1365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1365_high_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 3 - 250
Target Start/End: Original strand, 47436638 - 47436885
Alignment:
| Q |
3 |
aatgtatttggtttgtattacgatctaatacattagtcattgaatgaattaaaaaataaacttttgtttataactgagaccagaggaaatacacatttat |
102 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
47436638 |
aatgtatttggtctgtattacgacctaatacattagtcattgaatgaattaaaaaataaacttttgtttataaccgagaccagaggaaatacacatttat |
47436737 |
T |
|
| Q |
103 |
ttttaagggttcaccatgcatgtaagatctcacatttcaatagggttttcataatcctttaccttaatttggttgcgcttgttttgaaaccagaacttga |
202 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
47436738 |
ttttaagggttcaccgtgcatgtaagatctcaaatttcaatagggttttcataatcctttaccttaatttggttgcgcttgttttgaaactagaacttga |
47436837 |
T |
|
| Q |
203 |
tttgcgtcggtgtaagacctagctcacaactcaattgtttcctttgct |
250 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
47436838 |
tttgcgcaggtgtaaggcctagctcacaactcaattgtttcctttgct |
47436885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 11864750 - 11864682
Alignment:
| Q |
2 |
taatgtatttggtttgtattac-gatctaatacattagtcattgaatgaatt-aaaaaataaacttttg |
68 |
Q |
| |
|
||||||||||| | |||||||| || | ||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
11864750 |
taatgtatttgttatgtattacagaccaaatacattaatcattgaatgaattcaaaaaataaacttttg |
11864682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 52532748 - 52532696
Alignment:
| Q |
24 |
gatctaatacattagtcattgaatgaat-taaaaaataaacttttgtttataa |
75 |
Q |
| |
|
|||| ||||||||||| ||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
52532748 |
gatcaaatacattagttattgaatgaatataaaaaatgaacttttgtttataa |
52532696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 37321316 - 37321389
Alignment:
| Q |
2 |
taatgtatttggtttgtattac-gatctaatacattagtcattgaatgaattaaaaaataaacttttgtttata |
74 |
Q |
| |
|
|||||||||||||||| | || |||| ||||||||||| | |||| |||| ||||||||||||||||||||| |
|
|
| T |
37321316 |
taatgtatttggtttgcaatagagatcaaatacattagttgtagaataaatttaaaaataaacttttgtttata |
37321389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University