View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1365_high_27 (Length: 251)
Name: NF1365_high_27
Description: NF1365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1365_high_27 |
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| [»] scaffold0808 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 7824547 - 7824792
Alignment:
| Q |
1 |
cgattatccactttattcgacttaaccgaaaccgagtaaaccgactgtgaatttgggcggaaatggcctcatagttaccaaccgtgggttcgtgcggatt |
100 |
Q |
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| T |
7824547 |
cgattatccactttatccgacttaaccgaaaccgagtaaaccgactgtgaatttgggcggaaatggcctcatagttaccaaccgtgggttcgtgcggatt |
7824646 |
T |
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| Q |
101 |
gaggttttcagaccgatttccgacc----------gatgtccagccctagttgctaccacactattttaaggattatgtttatctcattatgttgtgttt |
190 |
Q |
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| T |
7824647 |
gaggttttcggatcgatttccgaccgaaaccaacagatgtccagccctagttgctaccacactattttaaggattatgtttatctcattatgttgtgttt |
7824746 |
T |
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| Q |
191 |
caagttctaactttgctattcagtctttgacctttttgttcttcat |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7824747 |
caagttctaactttgctattcagtctttgacctttttgttcttcat |
7824792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 22564433 - 22564396
Alignment:
| Q |
102 |
aggttttcagaccgatttccgaccgatgtccagcccta |
139 |
Q |
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| T |
22564433 |
aggttttcggaccgatttccgaccgatgtccaacccta |
22564396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 39278995 - 39279027
Alignment:
| Q |
95 |
cggattgaggttttcagaccgatttccgaccga |
127 |
Q |
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| T |
39278995 |
cggattgaggttttcggaccgatttccgaccga |
39279027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 18299449 - 18299557
Alignment:
| Q |
19 |
gacttaaccgaaaccgagtaaaccgactgtgaatttgggcggaaatggcctcatagttaccaaccgtgggttcgtgcggattgaggttttcagaccgatt |
118 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||| || |||||||||||||| |
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| T |
18299449 |
gacttaaccgaaatcgagtaaaccgactgtgaatttgggcggaaatggctctatagttaccaactgtgggtttgtgcggatttagattttcagaccgatt |
18299548 |
T |
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| Q |
119 |
tccgaccga |
127 |
Q |
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| T |
18299549 |
tccgaccga |
18299557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 5382153 - 5382257
Alignment:
| Q |
19 |
gacttaaccgaaaccgagtaaaccgactgtgaatttgggcggaaatggcctcatagttaccaaccgtgggttcgtgcggattgaggttttcagaccgatt |
118 |
Q |
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||||| || ||||| |||||||||||||||||||||||||||||||||| ||||||||||||| | |||| | |||||||||||||||| |||||||| |
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| T |
5382153 |
gacttgacagaaactgagtaaaccgactgtgaatttgggcggaaatggctctatagttaccaaccataggtttgcgcggattgaggttttcggaccgatt |
5382252 |
T |
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| Q |
119 |
tccga |
123 |
Q |
| |
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||||| |
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| T |
5382253 |
tccga |
5382257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 12602517 - 12602626
Alignment:
| Q |
18 |
cgacttaaccgaaaccgagtaaaccgactgtgaatttgggcggaaatggcctcatagttaccaaccgtgggttcgtgcggattgaggttttcagaccgat |
117 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||||| || || | |||||| |||| | |||||||||||||| |||||| |
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| T |
12602517 |
cgacttaaccgaaaccgagtaaaccgatagagaatttgggcggaaatggatctatgatttcaaaccgtaggtttggtcggattgaggttttggaaccgat |
12602616 |
T |
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| Q |
118 |
ttccgaccga |
127 |
Q |
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| T |
12602617 |
ttccgaccga |
12602626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 42102068 - 42101959
Alignment:
| Q |
18 |
cgacttaaccgaaaccgagtaaaccgactgtgaatttgggcggaaatggcctcatagttaccaaccgtgggttcgtgcggattgaggttttcagaccgat |
117 |
Q |
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||||||||||||||||||||||||| | | |||||||||||||||||| || || | |||||| |||| | |||||||||||||| |||||| |
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| T |
42102068 |
cgacttaaccgaaaccgagtaaaccaatagagaatttgggcggaaatggatctatgatttcaaaccgtaggtttggtcggattgaggttttggaaccgat |
42101969 |
T |
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| Q |
118 |
ttccgaccga |
127 |
Q |
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| T |
42101968 |
ttccgaccga |
42101959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 9992390 - 9992437
Alignment:
| Q |
18 |
cgacttaaccgaaaccgagtaaaccgactgtgaatttgggcggaaatg |
65 |
Q |
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||||||||||||||||||||||||||| | |||||||||| |||||| |
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| T |
9992390 |
cgacttaaccgaaaccgagtaaaccgatagagaatttgggcagaaatg |
9992437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0808 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0808
Description:
Target: scaffold0808; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 3808 - 3840
Alignment:
| Q |
95 |
cggattgaggttttcagaccgatttccgaccga |
127 |
Q |
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| T |
3808 |
cggattgaggttttcaggccgatttccgaccga |
3840 |
T |
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