View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1365_high_3 (Length: 621)
Name: NF1365_high_3
Description: NF1365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1365_high_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 28 - 621
Target Start/End: Complemental strand, 36878855 - 36878262
Alignment:
| Q |
28 |
catttttgtggttctagtgatctttgttattgctacaaattcaatctcagcagcaccctctctctttaccaaaaattcttcatgtccagttgacatgaat |
127 |
Q |
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| T |
36878855 |
catttttgtggttctagtgatctttgttattgctacaaattcaatctcagcagcaccctctctctttaccaaaaattcttcatgtccagttgacatgaat |
36878756 |
T |
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| Q |
128 |
tatgtgttcagagttccttggaacacctctacatgccttaacttccaacccttgcaatcccaaaacaaagcacaaacaactctatgttgtcaaactttgt |
227 |
Q |
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| T |
36878755 |
tacgtgttaagagttccttggaacacctctacatgccttaacttccaacccttgcaatcccaaaacaaagcacaaacaactctatgttgtcaaactttgt |
36878656 |
T |
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| Q |
228 |
tgtctctttttggcatagcactagcaaaaaatctcaagaagaactctcttttccaactcccaaatctccctacctccacttcatgccttcaagacttcca |
327 |
Q |
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| T |
36878655 |
tgtctctttttggcatagcactagcaaaaaatctcaagaagaactctcttttccaactcccaaatctccctacctccacttcatgccttcaagacttcca |
36878556 |
T |
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| Q |
328 |
aactaagctcagttccctttcacttaacaatgaccttgtgtcttcatgctttgatccacttcagtttgttatcactcctaacatatgcgctcgtgttcaa |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36878555 |
aactaagctcagttccctttcacttaacaatgaccttgtgtcttcatgctttgatccacttcagtttgttatcactcctaacatatgcgctcgtgttcaa |
36878456 |
T |
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| Q |
428 |
tctaagcaagattggatcagcagggttggtcctgcaccattgttcaacacttcttgtaaaccggaccttagtgtttctaccaattgtgatgcatgtgtta |
527 |
Q |
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| T |
36878455 |
tctaagcaagattggatcagcagggttggtcctgcaccattgttcaacacttcttgtaaaccagaccttagtgtttctaccaattgtgatgcatgtgtta |
36878356 |
T |
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| Q |
528 |
accagggactaaaggttcaagagaagctgaatcaaattgatgataatagttcacattccaaagattgcttttacttcaccatcatttatattgt |
621 |
Q |
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| T |
36878355 |
accagggactaaaggttcaagagaagctgaatcaaattgatggtaatagttcacattccaaagattgcttttacttcaccatcatttatattgt |
36878262 |
T |
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