View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1365_high_30 (Length: 236)
Name: NF1365_high_30
Description: NF1365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1365_high_30 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 36878633 - 36878855
Alignment:
| Q |
1 |
tagtgctatgccaaaaagagacaacaaagtttgacaacatagagttgtttgtgctttgttttgggattgcaagggttggaagttaaggcatgtagaggtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36878633 |
tagtgctatgccaaaaagagacaacaaagtttgacaacatagagttgtttgtgctttgttttgggattgcaagggttggaagttaaggcatgtagaggtg |
36878732 |
T |
|
| Q |
101 |
ttccaaggaactctgaacacataattcatgtcaactggacatgaagaatttttggtaaagagagagggtgctgctgagattgaatttgtagcaataacaa |
200 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36878733 |
ttccaaggaactcttaacacgtaattcatgtcaactggacatgaagaatttttggtaaagagagagggtgctgctgagattgaatttgtagcaataacaa |
36878832 |
T |
|
| Q |
201 |
agatcactagaaccacaaaaatg |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
36878833 |
agatcactagaaccacaaaaatg |
36878855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University