View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1365_high_31 (Length: 227)

Name: NF1365_high_31
Description: NF1365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1365_high_31
NF1365_high_31
[»] chr8 (1 HSPs)
chr8 (104-185)||(29417073-29417154)
[»] chr6 (1 HSPs)
chr6 (1-70)||(893173-893242)
[»] chr7 (3 HSPs)
chr7 (13-70)||(12316178-12316235)
chr7 (13-70)||(18566735-18566792)
chr7 (15-69)||(1724596-1724650)
[»] chr4 (2 HSPs)
chr4 (13-69)||(18809985-18810041)
chr4 (15-69)||(13758295-13758349)
[»] scaffold0164 (1 HSPs)
scaffold0164 (16-70)||(17228-17282)
[»] chr2 (2 HSPs)
chr2 (16-70)||(24072768-24072822)
chr2 (13-66)||(44482424-44482477)
[»] chr5 (1 HSPs)
chr5 (18-70)||(19834654-19834706)
[»] chr3 (1 HSPs)
chr3 (15-69)||(54077967-54078021)


Alignment Details
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 104 - 185
Target Start/End: Original strand, 29417073 - 29417154
Alignment:
Q  104 tttcttcctatactctacaaaaattgtaagctttaagttcaaacaaatactacattctagggtttagggtaatatatacttg 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29417073 tttcttcctatactctacaaaaattgtaagctttaagttcaaacaaatactacattctagggtttagggttatatatacttg 29417154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 893242 - 893173
Alignment:
Q  1 ttcttatcttttactattcatcttcactcatgacttctctctatgtattttctatgtttgatgattgttc 70  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  893242 ttcttatctttgactattcatcttcactcatcacttctctctatgtattttctatgtttgatgattgttc 893173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 12316235 - 12316178
Alignment:
Q  13 actattcatcttcactcatgacttctctctatgtattttctatgtttgatgattgttc 70  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12316235 actattcatcttcactcatgacttctctctatatattttctatgtttgatgattgttc 12316178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 18566735 - 18566792
Alignment:
Q  13 actattcatcttcactcatgacttctctctatgtattttctatgtttgatgattgttc 70  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  18566735 actattcatcttcactcatgacttctctttatatattttctatgtttgatgattgttc 18566792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 1724650 - 1724596
Alignment:
Q  15 tattcatcttcactcatgacttctctctatgtattttctatgtttgatgattgtt 69  Q
    ||||||| |||||||||||||||||||||| | || |||||||||||||||||||    
T  1724650 tattcatattcactcatgacttctctctatatcttctctatgtttgatgattgtt 1724596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 18809985 - 18810041
Alignment:
Q  13 actattcatcttcactcatgacttctctctatgtattttctatgtttgatgattgtt 69  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18809985 actattcatcttcactcatgacttctctctatatattttctatgtttgatgattgtt 18810041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 13758349 - 13758295
Alignment:
Q  15 tattcatcttcactcatgacttctctctatgtattttctatgtttgatgattgtt 69  Q
    ||||||| |||||||||||||||||||||| | || |||||||||||||||||||    
T  13758349 tattcatattcactcatgacttctctctatatcttctctatgtttgatgattgtt 13758295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 17228 - 17282
Alignment:
Q  16 attcatcttcactcatgacttctctctatgtattttctatgtttgatgattgttc 70  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17228 attcatcttcactcatgacttctctctatatattttctatgtttgatgattgttc 17282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 24072768 - 24072822
Alignment:
Q  16 attcatcttcactcatgacttctctctatgtattttctatgtttgatgattgttc 70  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24072768 attcatcttcactcatgacttctctctatatattttctatgtttgatgattgttc 24072822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 44482477 - 44482424
Alignment:
Q  13 actattcatcttcactcatgacttctctctatgtattttctatgtttgatgatt 66  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  44482477 actattcatcttcactcatgacttctctctatatattttctatttttgatgatt 44482424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 19834654 - 19834706
Alignment:
Q  18 tcatcttcactcatgacttctctctatgtattttctatgtttgatgattgttc 70  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19834654 tcatcttcactcatgacttctctctatatattttctatgtttgatgattgttc 19834706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 54078021 - 54077967
Alignment:
Q  15 tattcatcttcactcatgacttctctctatgtattttctatgtttgatgattgtt 69  Q
    ||||||| |||||||||||||||||||||| | || |||||||||||||||||||    
T  54078021 tattcatattcactcatgacttctctctatatcttctctatgtttgatgattgtt 54077967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University