View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1365_high_4 (Length: 593)
Name: NF1365_high_4
Description: NF1365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1365_high_4 |
 | |
|
| [»] scaffold0264 (1 HSPs) |
| | |
|
| [»] scaffold0074 (2 HSPs) |
| | |
|
| [»] scaffold0007 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 469; Significance: 0; HSPs: 17)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 28 - 496
Target Start/End: Original strand, 20237177 - 20237645
Alignment:
| Q |
28 |
acaacaatgaagataattttctgtttctctgcacaaaataagtaaaatttataaatctcataatttcaatatattgaatggaatcctacttgagaaaaga |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20237177 |
acaacaatgaagataattttctgtttctctgcacaaaataagtaaaatttataaatctcataatttcaatatattgaatggaatcctacttgagaaaaga |
20237276 |
T |
|
| Q |
128 |
cttcacctgcatttcctggtaatggggaaggactcccaggcggctgagctttgtccatgtaaaaaggaaacaattcaaacctcagattacagctaggata |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20237277 |
cttcacctgcatttcctggtaatggggaaggactcccaggcggctgagctttgtccatgtaaaaaggaaacaattcaaacctcagattacagctaggata |
20237376 |
T |
|
| Q |
228 |
cataattcttcccccaacactgcccaaatttggccatggaattgctgtaacgatcacagtatttagacaagaagcgcaatcctcactagacaaatctctc |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20237377 |
cataattcttcccccaacactgcccaaatttggccatggaattgctgtaacgatcacagtatttagacaagaagcgcaatcctcactagacaaatctctc |
20237476 |
T |
|
| Q |
328 |
gtacattgtccaagactatacaaggtttgtttatcattcagttttaatgaattagtcagatacatttcatcactgtcccctgtgtcattcgcaagttgat |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20237477 |
gtacattgtccaagactatacaaggtttgtttatcattcagttttaatgaattagtcagatacatttcatcactgtcccctgtgtcattcgcaagttgat |
20237576 |
T |
|
| Q |
428 |
ataactgatttgataatgtactagtgaacgagttttggtatgtgatggaatcttcggtgatatttatat |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20237577 |
ataactgatttgataatgtactagtgaacgagttttggtatgtgatggaatcttcggtgatatttatat |
20237645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 28 - 496
Target Start/End: Original strand, 22131161 - 22131629
Alignment:
| Q |
28 |
acaacaatgaagataattttctgtttctctgcacaaaataagtaaaatttataaatctcataatttcaatatattgaatggaatcctacttgagaaaaga |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22131161 |
acaacaatgaagataattttctgtttctctgcacaaaataagtaaaatttataaatctcataatttcaatatattgaatggaatcctacttgagaaaaga |
22131260 |
T |
|
| Q |
128 |
cttcacctgcatttcctggtaatggggaaggactcccaggcggctgagctttgtccatgtaaaaaggaaacaattcaaacctcagattacagctaggata |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22131261 |
cttcacctgcatttcctggtaatggggaaggactcccaggcggctgagctttgtccatgtaaaaaggaaacaattcaaacctcagattacagctaggata |
22131360 |
T |
|
| Q |
228 |
cataattcttcccccaacactgcccaaatttggccatggaattgctgtaacgatcacagtatttagacaagaagcgcaatcctcactagacaaatctctc |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22131361 |
cataattcttcccccaacactgcccaaatttggccatggaattgctgtaacgatcacagtatttagacaagaagcgcaatcctcactagacaaatctctc |
22131460 |
T |
|
| Q |
328 |
gtacattgtccaagactatacaaggtttgtttatcattcagttttaatgaattagtcagatacatttcatcactgtcccctgtgtcattcgcaagttgat |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22131461 |
gtacattgtccaagactatacaaggtttgtttatcattcagttttaatgaattagtcagatacatttcatcactgtcccctgtgtcattcgcaagttgat |
22131560 |
T |
|
| Q |
428 |
ataactgatttgataatgtactagtgaacgagttttggtatgtgatggaatcttcggtgatatttatat |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22131561 |
ataactgatttgataatgtactagtgaacgagttttggtatgtgatggaatcttcggtgatatttatat |
22131629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 28 - 471
Target Start/End: Complemental strand, 22205907 - 22205453
Alignment:
| Q |
28 |
acaacaatgaagataattttctgtttctctgcacaaaataagtaaaatttataaatctcataatttcaatatattgaatggaatcctacttg-------- |
119 |
Q |
| |
|
||||||||||| | ||||||| |||| |||||||||||||| || | ||||||||||||||||||||||| |||||||| ||||||||| || |
|
|
| T |
22205907 |
acaacaatgaacacaattttccgtttgtctgcacaaaataattaca-tttataaatctcataatttcaatgtattgaatcgaatcctacatgtaaaattg |
22205809 |
T |
|
| Q |
120 |
-agaaaagacttcacctgcatttcctggtaatggggaaggactcccaggcggctgagctttgtc------catgtaaaaaggaaacaattcaaacctcag |
212 |
Q |
| |
|
|| |||||||||||||||||||| |||||| || | |||||||||| |||||||||| ||| |||||||||||| ||||||||||||||||| |
|
|
| T |
22205808 |
gagcaaagacttcacctgcatttcgtggtaaaggtg---gactcccaggtggctgagcttcgtcaccctccatgtaaaaagggaacaattcaaacctcag |
22205712 |
T |
|
| Q |
213 |
attacagctaggatacataattcttcccccaacactgcccaaatttggccatggaattgctgtaacgatcacagtatttagacaagaagcgcaatcctca |
312 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||| || ||||||| ||||||||||| |||| ||||||| |||||||||||| ||||||| ||||| |
|
|
| T |
22205711 |
attgcagctaggatagataattcttcccccaacactaccgaaatttgaccatggaattgatgtagtgatcacattatttagacaagtagcgcaaccctca |
22205612 |
T |
|
| Q |
313 |
ctagacaaatctctcgtacattgtccaagactatacaaggtttgtttatcattcagttttaatgaattagtcagatacatttcatcactgtcccctgtgt |
412 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||| | |
|
|
| T |
22205611 |
ctagacaaatctcgcgtacattgtccaagactatacaaggtttgtacatcattcagttttaatgaattagtcttatatctttcatcactgtcccctgtat |
22205512 |
T |
|
| Q |
413 |
cattcgcaagttgatataactgatttgataatgtactagtgaacgagttttggtatgtg |
471 |
Q |
| |
|
|||||||||||||| |||||||||| ||||| |||||||||||| ||||||||| |||| |
|
|
| T |
22205511 |
cattcgcaagttgagataactgattcgataaggtactagtgaaccagttttggtttgtg |
22205453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 180 - 496
Target Start/End: Original strand, 20085416 - 20085732
Alignment:
| Q |
180 |
gtccatgtaaaaaggaaacaattcaaacctcagattacagctaggatacataattcttcccccaacactgcccaaatttggccatggaattgctgtaacg |
279 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||| ||||||||| |||||| | |
|
|
| T |
20085416 |
gtccatgtaaaattggaacaattcaaacctcagattgcagctaggatatataattcttcccccaacactacccaaatttgaccatggaatcgctgtattg |
20085515 |
T |
|
| Q |
280 |
atcacagtatttagacaagaagcgcaatcctcactagacaaatctctcgtacattgtccaagactatacaaggtttgtttatcattcagttttaatgaat |
379 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||||||||||| |||||||||||||||| |||||||||||||| |||||| ||||||||||||| |
|
|
| T |
20085516 |
atcacatcatttagacaagaagtgcaatcctgactagacaaatcttgcgtacattgtccaagagtatacaaggtttgtacatcatttagttttaatgaat |
20085615 |
T |
|
| Q |
380 |
tagtcagatacatttcatcactgtcccctgtgtcattcgcaagttgatataactgatttgataatgtactagtgaacgagttttggtatgtgatggaatc |
479 |
Q |
| |
|
||||| ||| ||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
20085616 |
tagtcttatatctttcaccactgtcccctgtatcattcgcaagttgagataactgatttgataatgtactagtgaacaagttttggtttgtgatggaatc |
20085715 |
T |
|
| Q |
480 |
ttcggtgatatttatat |
496 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
20085716 |
tttggtgatatttatat |
20085732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 180 - 496
Target Start/End: Complemental strand, 24385966 - 24385643
Alignment:
| Q |
180 |
gtccatgtaaaaaggaaacaattcaaacctcagattacagctaggatacataattcttcccccaacactgcccaaatttggccatggaattgctgtaacg |
279 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
24385966 |
gtccatgtaaaattggaacaattcaaacctcagattgcagctaggatatataattcttcccccaacactacccaaattttaccatggaattgctgtaacg |
24385867 |
T |
|
| Q |
280 |
atcacagtatttagacaagaagcgcaatcctcactagacaaatctctcgtacattgtccaagactatacaaggtttgt--tt----atcattcagtttta |
373 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||| || |||||| ||||||| |
|
|
| T |
24385866 |
atcacatcatttagacaagaagcgcaatcctgactagacaaatcttgcgtacattgtccaagagtatacaaggtttgtacttgtacatcatttagtttta |
24385767 |
T |
|
| Q |
374 |
atgaattagtcagatacatttcatc--actgtcccctgtgtcattcgcaagttgatataactgatttgataatgtactagtgaacgagttttggtatgtg |
471 |
Q |
| |
|
||||||||||| ||| ||||| | |||||| ||||| ||||| |||||||||| ||||||||| |||||||| |||||||| ||||||||| |||| |
|
|
| T |
24385766 |
atgaattagtcttatatctttcaccgtactgtctcctgtatcattggcaagttgatttaactgattccataatgtattagtgaacaagttttggtttgtg |
24385667 |
T |
|
| Q |
472 |
atggaatcttcggtgatatttatat |
496 |
Q |
| |
|
|||||||||| |||||||||||||| |
|
|
| T |
24385666 |
atggaatctt-ggtgatatttatat |
24385643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 132 - 424
Target Start/End: Original strand, 18996893 - 18997191
Alignment:
| Q |
132 |
acctgcatttcctggtaatggggaaggactcccaggcggctgagctttgtc------catgtaaaaaggaaacaattcaaacctcagattacagctagga |
225 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |||||| ||| ||||||||| | |||||||||||||||||||| ||||||||| |
|
|
| T |
18996893 |
acctgcattttctggtaatggggaaggactcccaggcggcagagcttcgtcaccctccatgtaaaattggaacaattcaaacctcagattgcagctagga |
18996992 |
T |
|
| Q |
226 |
tacataattcttcccccaacactgcccaaatttggccatggaattgctgtaacgatcacagtatttagacaagaagcgcaatcctcactagacaaatctc |
325 |
Q |
| |
|
|| ||||||||||||| |||| | | ||| |||| ||||||||||||| || ||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18996993 |
tatataattcttcccctaacattactcaattttgaccatggaattgctctattgatcacatcctttagacaagaagtgcaatcctcactagacaaatctc |
18997092 |
T |
|
| Q |
326 |
tcgtacattgtccaagactatacaaggtttgtttatcattcagttttaatgaattagtcagatacatttcatcactgtcccctgtgtcattcgcaagtt |
424 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||| ||| ||||| |||||| ||| || |||| ||||||| |
|
|
| T |
18997093 |
gcgtacattgtccaagactatacaagttttgttcatcatacagttttaatgaattagtcatatatctttcaacactgtaccccgtttcatatgcaagtt |
18997191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 347 - 466
Target Start/End: Original strand, 18981218 - 18981337
Alignment:
| Q |
347 |
acaaggtttgtttatcattcagttttaatgaattagtcagatacatttcatcactgtcccctgtgtcattcgcaagttgatataactgatttgataatgt |
446 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| |
|
|
| T |
18981218 |
acaaggtttgtgtatcattcatttttaatgaattagtcagatacatttcatcactgtcccctgtatcattcgcaagttgagataattgatttgataatgc |
18981317 |
T |
|
| Q |
447 |
actagtgaacgagttttggt |
466 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
18981318 |
actagtgaacaagttttggt |
18981337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 196 - 380
Target Start/End: Original strand, 21971313 - 21971497
Alignment:
| Q |
196 |
aacaattcaaacctcagattacagctaggatacataattcttcccccaacactgcccaaatttggccatggaattgctgtaacgatcacagtatttagac |
295 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || |||||||| |||||||| |||||| || |||||||||| || || ||||| | |||||||| |
|
|
| T |
21971313 |
aacaattcaaacctcagattgcagctaggatatatgattcttcctccaacacttcccaaaaatgaccatggaatttctctactgatcatatcatttagac |
21971412 |
T |
|
| Q |
296 |
aagaagcgcaatcctcactagacaaatctctcgtacattgtccaagactatacaaggtttgtttatcattcagttttaatgaatt |
380 |
Q |
| |
|
| ||| |||||||| ||||||||||||| | ||||||||| ||||| ||||||| |||||||||||||||| |||||||||| |
|
|
| T |
21971413 |
atgaattgcaatcctgactagacaaatcttttgtacattgttcaagagtatacaaagtttgtttatcattcaaaattaatgaatt |
21971497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 180 - 298
Target Start/End: Original strand, 18981104 - 18981222
Alignment:
| Q |
180 |
gtccatgtaaaaaggaaacaattcaaacctcagattacagctaggatacataattcttcccccaacactgcccaaatttggccatggaattgctgtaacg |
279 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
18981104 |
gtccatgtaaaattggaacaattcaaacctcagattgcagctaggatatataattcttcccccaacactacccaaatttgaccatggaattgctgtagta |
18981203 |
T |
|
| Q |
280 |
atcacagtatttagacaag |
298 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
18981204 |
atcacatcatttagacaag |
18981222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 196 - 466
Target Start/End: Original strand, 20204752 - 20205022
Alignment:
| Q |
196 |
aacaattcaaacctcagattacagctaggatacataattcttcccccaacactgcccaaatttggccatggaattgctgtaacgatcacagtatttagac |
295 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| | |||||||| |||||||| |||||| || |||||||||| || || ||||| | |||||||| |
|
|
| T |
20204752 |
aacaattcaaacctcagattgcagctaggatataagattcttcctccaacacttcccaaaaatgaccatggaatttctttactgatcatatcatttagac |
20204851 |
T |
|
| Q |
296 |
aagaagcgcaatcctcactagacaaatctctcgtacattgtccaagactatacaaggtttgtttatcattcagttttaatgaattagtcagatacatttc |
395 |
Q |
| |
|
| ||| ||| || ||| | ||||||||| | ||||||||| ||| | |||||||||||||||||||||||| | | |||||||| ||| | | |||| |
|
|
| T |
20204852 |
atgaattgcattcgtcagttgacaaatcttttgtacattgttcaacagtatacaaggtttgtttatcattcaatatcaatgaatttgtcgtaaatttttc |
20204951 |
T |
|
| Q |
396 |
atcactgtcccctgtgtcattcgcaagttgatataactgatttgataatgtactagtgaacgagttttggt |
466 |
Q |
| |
|
|||| ||| ||| || |||| |||||| |||| ||||||||||||| | | |||||| ||||||||| |
|
|
| T |
20204952 |
atcattgttccccgtaacattgacaagttcggataattgatttgataatgcatttgtgaacaagttttggt |
20205022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 196 - 466
Target Start/End: Original strand, 22098775 - 22099045
Alignment:
| Q |
196 |
aacaattcaaacctcagattacagctaggatacataattcttcccccaacactgcccaaatttggccatggaattgctgtaacgatcacagtatttagac |
295 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| | |||||||| |||||||| |||||| || |||||||||| || || ||||| | |||||||| |
|
|
| T |
22098775 |
aacaattcaaacctcagattgcagctaggatataagattcttcctccaacacttcccaaaaatgaccatggaatttctttactgatcatatcatttagac |
22098874 |
T |
|
| Q |
296 |
aagaagcgcaatcctcactagacaaatctctcgtacattgtccaagactatacaaggtttgtttatcattcagttttaatgaattagtcagatacatttc |
395 |
Q |
| |
|
| ||| ||| || ||| | ||||||||| | ||||||||| ||| | |||||||||||||||||||||||| | | |||||||| ||| | | |||| |
|
|
| T |
22098875 |
atgaattgcattcgtcagttgacaaatcttttgtacattgttcaacagtatacaaggtttgtttatcattcaatatcaatgaatttgtcgtaaatttttc |
22098974 |
T |
|
| Q |
396 |
atcactgtcccctgtgtcattcgcaagttgatataactgatttgataatgtactagtgaacgagttttggt |
466 |
Q |
| |
|
|||| ||| ||| || |||| |||||| |||| ||||||||||||| | | |||||| ||||||||| |
|
|
| T |
22098975 |
atcattgttccccgtaacattgacaagttcggataattgatttgataatgcatttgtgaacaagttttggt |
22099045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 20085238 - 20085307
Alignment:
| Q |
28 |
acaacaatgaagataattttctgtttctctgcacaaaataagtaaaatttataaatctcataatttcaat |
97 |
Q |
| |
|
||||||||||||| |||||||||||| ||||| | |||||| ||| || ||||||||||||||||||||| |
|
|
| T |
20085238 |
acaacaatgaagacaattttctgtttatctgcgcgaaataattaacatatataaatctcataatttcaat |
20085307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 18996804 - 18996868
Alignment:
| Q |
33 |
aatgaagataattttctgtttctctgcacaaaataagtaaaatttataaatctcataatttcaat |
97 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| |||| ||| ||||||||||| ||||| |||||| |
|
|
| T |
18996804 |
aatgaagacaattttatgtttctctgcacaagataattaacatttataaatcacataaattcaat |
18996868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 270
Target Start/End: Complemental strand, 20232167 - 20232093
Alignment:
| Q |
196 |
aacaattcaaacctcagattacagctaggatacataattcttcccccaacactgcccaaatttggccatggaatt |
270 |
Q |
| |
|
|||||||||||||||| |||||| |||||||| | || |||||| |||||||| ||||||| ||||| |||||| |
|
|
| T |
20232167 |
aacaattcaaacctcaaattacaactaggatataaaactcttccaccaacacttcccaaataaggccaaggaatt |
20232093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 270
Target Start/End: Complemental strand, 22126151 - 22126077
Alignment:
| Q |
196 |
aacaattcaaacctcagattacagctaggatacataattcttcccccaacactgcccaaatttggccatggaatt |
270 |
Q |
| |
|
|||||||||||||||| |||||| |||||||| | || |||||| |||||||| ||||||| ||||| |||||| |
|
|
| T |
22126151 |
aacaattcaaacctcaaattacaactaggatataaaactcttccaccaacacttcccaaataaggccaaggaatt |
22126077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 20193272 - 20193337
Alignment:
| Q |
28 |
acaacaatgaagataattttctgtttctctgcacaaaataagtaaaatttataaatctcataattt |
93 |
Q |
| |
|
||||||||||| |||||| ||| |||||||||||||| | ||| |||||||||| ||||||||| |
|
|
| T |
20193272 |
acaacaatgaatataattgtcttcttctctgcacaaaaccattaatatttataaatgtcataattt |
20193337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 22087295 - 22087360
Alignment:
| Q |
28 |
acaacaatgaagataattttctgtttctctgcacaaaataagtaaaatttataaatctcataattt |
93 |
Q |
| |
|
||||||||||| |||||| ||| |||||||||||||| | ||| |||||||||| ||||||||| |
|
|
| T |
22087295 |
acaacaatgaatataattgtcttcttctctgcacaaaaccattaatatttataaatgtcataattt |
22087360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 123 - 471
Target Start/End: Original strand, 15309 - 15660
Alignment:
| Q |
123 |
aaagacttcacctgcatttcctggtaatggggaaggactcccaggcggctgagctttgtc------catgtaaaaaggaaacaattcaaacctcagatta |
216 |
Q |
| |
|
|||||||||||||||||||| |||||| || | |||||||||| |||||||||| ||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
15309 |
aaagacttcacctgcatttcgtggtaaaggtg---gactcccaggtggctgagcttcgtcaccctccatgtaaaaagggaacaattcaaacctcagattg |
15405 |
T |
|
| Q |
217 |
cagctaggatacataattcttcccccaacactgcccaaatttggccatggaattgctgtaacgatcacagtatttagacaagaagcgcaatcctcactag |
316 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||| ||||||||||| |||| ||||||| |||||||||||| ||||||| ||||||||| |
|
|
| T |
15406 |
cagctaggatagataattcttcccccaacactacccaaatttgaccatggaattgatgtagtgatcacattatttagacaagtagcgcaaccctcactag |
15505 |
T |
|
| Q |
317 |
acaaatctctcgtacattgtccaagactatacaaggtttgtttatcattcagttttaatgaattagtcagatacatttcatcactgtcccctgtgtcatt |
416 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
15506 |
acaaatctcgcgtacattgtccaagactatacaaggtttgtttatcattcagttttaatgaattagtcttatatctttcatcactgtcccctgtatcatt |
15605 |
T |
|
| Q |
417 |
cgcaagttgatataactgatttgataatgtactagtgaacgagttttggtatgtg |
471 |
Q |
| |
|
|||||||||| |||||||||| ||||| |||||||||||| ||||||||| |||| |
|
|
| T |
15606 |
cgcaagttgagataactgattcgataaggtactagtgaaccagttttggtttgtg |
15660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 181 - 496
Target Start/End: Complemental strand, 48572 - 48257
Alignment:
| Q |
181 |
tccatgtaaaaaggaaacaattcaaacctcagattacagctaggatacataattcttcccccaacactgcccaaatttggccatggaattgctgtaacga |
280 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
48572 |
tccatgtaaaaacggaacaattcaaacctcagattgcagctaggatagataattcttcccccaacactacccaaatttgaccatggaattgctgtaacga |
48473 |
T |
|
| Q |
281 |
tcacagtatttagacaagaagcgcaatcctcactagacaaatctctcgtacattgtccaagactatacaaggtttgtttatcattcagttttaatgaatt |
380 |
Q |
| |
|
||||| ||||||||||| || |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48472 |
tcacatcatttagacaagtagagcaatcctgactagacaaatctctcgtacattgtgcaagactatacaaggtttgtttatcattcagttttaatgaatt |
48373 |
T |
|
| Q |
381 |
agtcagatacatttcatcactgtcccctgtgtcattcgcaagttgatataactgatttgataatgtactagtgaacgagttttggtatgtgatggaatct |
480 |
Q |
| |
|
|||| ||| | ||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||||||||||| ||||| | |||||| | ||| | |
|
|
| T |
48372 |
agtcttatatctatcatcactgtcccctgtatcatttgcaagttgagataactgattcgataatgtactagtgaacaagtttagatatgtgctaaaatat |
48273 |
T |
|
| Q |
481 |
tcggtgatatttatat |
496 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
48272 |
ttggtgatatttatat |
48257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 48689 - 48644
Alignment:
| Q |
51 |
tttctctgcacaaaataagtaaaatttataaatctcataatttcaa |
96 |
Q |
| |
|
|||||||||||||||||| || ||||||||| ||||||||||||| |
|
|
| T |
48689 |
tttctctgcacaaaataattagcatttataaacctcataatttcaa |
48644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 132 - 496
Target Start/End: Complemental strand, 6154 - 5784
Alignment:
| Q |
132 |
acctgcatttcctggtaatggggaaggactcccaggcggctgagcttt------gtccatgtaaaaaggaaacaattcaaacctcagattacagctagga |
225 |
Q |
| |
|
||||||||| || ||||||| |||||| ||||||| ||||||||||| |||||||||||| | |||||||||||||||||||| ||||||||| |
|
|
| T |
6154 |
acctgcattgtctagtaatggagaaggattcccaggtggctgagcttttttaccgtccatgtaaaattggaacaattcaaacctcagattgcagctagga |
6055 |
T |
|
| Q |
226 |
tacataattcttcccccaacactgcccaaatttggccatggaattgctgtaacgatcacagtatttagacaagaagcgcaatcctcactagacaaatctc |
325 |
Q |
| |
|
|| |||||||| ||||||||||| |||||||||| ||| |||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6054 |
tatataattctgcccccaacactacccaaatttgaccagggaattgctgtagcgatcacatcatttagacaagtagcgcaatcctcactagacaaatctc |
5955 |
T |
|
| Q |
326 |
tcgtacattgtccaagactatacaaggtttgtttatcattcagttttaatgaattagtcagatacatttcatcactgtcccctgtgtcattcgcaagttg |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||||||||||| |||||||||||||| |
|
|
| T |
5954 |
gcgtacattgtccaagactatacaaggtttgtacatcattcagttttaatgaattagtcttatatctatcatcactgtcccctgtatcattcgcaagttg |
5855 |
T |
|
| Q |
426 |
atataactgatttgataatgtactagtgaacgagttttggtatgtgatggaatcttcggtgatatttatat |
496 |
Q |
| |
|
| |||||| ||| |||||||||||||||||| ||||||||| |||| | ||| || |||||||||||||| |
|
|
| T |
5854 |
agataactcattggataatgtactagtgaacaagttttggtttgtgctacaatttttggtgatatttatat |
5784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 6225 - 6179
Alignment:
| Q |
51 |
tttctctgcacaaaataagtaaaatttataaatctcataatttcaat |
97 |
Q |
| |
|
|||||||||||||| ||| ||| |||||||||||||||||||| ||| |
|
|
| T |
6225 |
tttctctgcacaaagtaattaacatttataaatctcataattttaat |
6179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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