View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1365_high_6 (Length: 565)
Name: NF1365_high_6
Description: NF1365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1365_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 82 - 467
Target Start/End: Complemental strand, 24274098 - 24273714
Alignment:
| Q |
82 |
caacaatatcagataacgtagtaccttgtagaaagtaaaaagtaccttgcttcacacctttcaaaattacacttgataattgtagaaaaatatgtatagc |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||| ||| |||||||| | | ||||| |||||||||| |
|
|
| T |
24274098 |
caacaatatcagataacgtagtaccttgtaaaaagtacaaagtactctgcttcacacctttcagaatcacacttga--acccttgaaaa-tatgtatagc |
24274002 |
T |
|
| Q |
182 |
tccaccttcatttttaaaactaaaccccttcttgtccaaaagactcaaagatataatattattcgttatgtgtggaacatgtctaactttattcaatgta |
281 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| || || |||||| |
|
|
| T |
24274001 |
tccaccttcacttttaaaactaaaccccttcttgtccagaagactcaaagatataatattattcgttacgtgtggaacatgtctaacattgtttaatgta |
24273902 |
T |
|
| Q |
282 |
cataatttaccatcacgagtactaatcttgatagagctct--ccaaccattttgcaaacataactattggccataacaatattaccaccattgaattgct |
379 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24273901 |
cataatttaccatcatgagaactaatcttgatagagctcatcccaaccattttgcaaacataactattggctataacaatattaccaccattgaattgct |
24273802 |
T |
|
| Q |
380 |
cataggttgaaagtcattctctcataagacaaatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtgaac |
467 |
Q |
| |
|
||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24273801 |
cataggttgaaagccattctctcgtaggacaaatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtgaac |
24273714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 181 - 465
Target Start/End: Original strand, 13417654 - 13417940
Alignment:
| Q |
181 |
ctccaccttcatttttaaaactaaaccccttcttgtccaaaagactcaaagatataatattattcgttatgtgtggaacatgtctaactttattcaatgt |
280 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||| |||||| ||| ||||| |||||||||||| ||||||||| || | ||| |
|
|
| T |
13417654 |
ctccaccttcacttttgaaactaaaccccttcttgtccaaaagactcagagatatctgattcttcgtcatgtgtggaacaggtctaacttcgttaagtgt |
13417753 |
T |
|
| Q |
281 |
acataatttaccatcacgagtactaatcttgatagagctc--tccaaccattttgcaaacataactattggccataacaatattaccaccattgaattgc |
378 |
Q |
| |
|
||| |||||||||| | |||| ||||| |||||||||| | ||||||| |||| |||||||||||||||||||||||||| | ||||| |||| | |
|
|
| T |
13417754 |
acaaaatttaccattatgagtcctaattttgatagagcccatcccaaccaccttgctgacataactattggccataacaatattgcaaccatctaatttc |
13417853 |
T |
|
| Q |
379 |
tcataggttgaaagtcattctctcataagacaaatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtga |
465 |
Q |
| |
|
||||||| ||||| |||||||| || ||||||||||||||||| || ||||||||||||||| |||| | |||||||||||||| |
|
|
| T |
13417854 |
tcataggatgaaaacaattctctcctaggacaaatatgataagacgcttcggaatctagaacccatacattagtgtaatgtgtgtga |
13417940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 173 - 445
Target Start/End: Complemental strand, 28706366 - 28706092
Alignment:
| Q |
173 |
atgtatagctccaccttcatttttaaaactaaaccccttcttgtccaaaagactcaaagatataatattattcgttatgtgtggaacatgtctaacttta |
272 |
Q |
| |
|
||||||| ||||| ||||| ||| ||||||||||||||||||||||||||||||||| |||| | ||| ||||| |||||||||||||||||||||| |
|
|
| T |
28706366 |
atgtataactccagcttcacctttgaaactaaaccccttcttgtccaaaagactcaaaaatatcagattcttcgtcatgtgtggaacatgtctaacttcg |
28706267 |
T |
|
| Q |
273 |
ttcaatgtacataatttaccatcacgagtactaatcttgatagagctc--tccaaccattttgcaaacataactattggccataacaatattaccaccat |
370 |
Q |
| |
|
||| ||||||||||||||||||| |||| ||||||||||||| | | ||||||| ||| | | |||||||||||||||||||||| ||||||| |
|
|
| T |
28706266 |
ttcggtgtacataatttaccatcatgagtcgtaatcttgatagatcccatcccaaccaccttgtaggaagaactattggccataacaatattgccaccat |
28706167 |
T |
|
| Q |
371 |
tgaattgctcataggttgaaagtcattctctcataagacaaatatgataagacactctggaatctagaacccaca |
445 |
Q |
| |
|
|||| |||||||||||||| |||||||||| || |||||||||||||||| ||| |||||||||||| |||| |
|
|
| T |
28706166 |
ccaatttctcataggttgaaaatcattctctcctaggacaaatatgataagatgctccggaatctagaacgcaca |
28706092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 176 - 465
Target Start/End: Complemental strand, 30047574 - 30047283
Alignment:
| Q |
176 |
tatagctccaccttcatttttaaaactaaaccccttcttgtccaaaagactcaaagatataatattattcgttatgtgtggaacatgtctaactttattc |
275 |
Q |
| |
|
|||| ||||||||||| ||| |||||||||| |||||||||||||||||||| |||||| ||| ||||| |||||||||||||||||||||| ||| |
|
|
| T |
30047574 |
tataactccaccttcacctttgaaactaaacctcttcttgtccaaaagactcagagatatctgattcttcgtcatgtgtggaacatgtctaacttctttc |
30047475 |
T |
|
| Q |
276 |
aatgtacataatttaccatcacgagtactaatcttgatagagctc--tccaaccattttgcaaacataactattggccataacaatattaccaccattga |
373 |
Q |
| |
|
| |||||| |||||||||||| |||| |||||||| ||||| | | ||||||| ||||| ||| |||||| ||||||| ||||||| ||||||| | |
|
|
| T |
30047474 |
agtgtacaaaatttaccatcatgagtcctaatcttcatagatcacatcccaaccaccttgcagacagaactatgggccatatcaatatttccaccatcca |
30047375 |
T |
|
| Q |
374 |
attgctcataggttgaaagtcattctctcataagacaaatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtga |
465 |
Q |
| |
|
| |||||||||| ||||| |||| |||| || ||||||||||||||||| ||| ||||||||||||||||| ||| | |||||||||||| |
|
|
| T |
30047374 |
actgctcataggatgaaaaccattatctcctaggacaaatatgataagacgctccggaatctagaacccacatatcggtataatgtgtgtga |
30047283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 13417573 - 13417622
Alignment:
| Q |
99 |
gtagtaccttgtagaaagtaaaaagtaccttgcttcacacctttcaaaat |
148 |
Q |
| |
|
|||||||||||||||||||| | ||||| | | ||||||||||||||||| |
|
|
| T |
13417573 |
gtagtaccttgtagaaagtagagagtacatcgtttcacacctttcaaaat |
13417622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 244 - 464
Target Start/End: Original strand, 53471323 - 53471542
Alignment:
| Q |
244 |
tcgttatgtgtggaacatgtctaactttattcaatgtacataatttaccatcacgagtactaatcttgatagagctc-tccaaccattttgcaaacataa |
342 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||| | ||| | || | | || || |
|
|
| T |
53471323 |
tcgtcatgtgtggaacaagtctaactttgttcaatgtacataatttaccatcacgagtcctaatcttaatagagcacatcccaacaacct--aggcagaa |
53471420 |
T |
|
| Q |
343 |
ctattggccataacaatattaccaccattgaattgctcataggttgaaagtcattctctcataagacaaatatgataagacactctggaatctagaaccc |
442 |
Q |
| |
|
||| ||||||||||||||| ||||||| ||||||||||||||| ||| ||||||| | || |||||||||||||||| ||| |||||| ||||||| |
|
|
| T |
53471421 |
ctagcggccataacaatattgccaccatccaattgctcataggttaaaaaccattctcccctaggacaaatatgataagatgctccggaatccagaaccc |
53471520 |
T |
|
| Q |
443 |
acacatcaatgtaatgtgtgtg |
464 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
53471521 |
acacatcagtgtaatgtgtgtg |
53471542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 89 - 465
Target Start/End: Original strand, 9009021 - 9009400
Alignment:
| Q |
89 |
atcagataacgtagtaccttgtagaaagtaaaaagtaccttgcttcacacctttcaaaattacacttgataattgtagaaaaatatgtatagctccacct |
188 |
Q |
| |
|
|||||||| ||| ||||||||||||| |||| ||||||| ||||| ||||||| | ||| |||||||| | | | ||| ||||||| ||||| || |
|
|
| T |
9009021 |
atcagatagtgtaataccttgtagaaattaaagagtacctcgcttctcaccttttagaatcacacttga--acccttgcaaac-atgtataactccatct |
9009117 |
T |
|
| Q |
189 |
tcatttttaaaactaaaccccttcttgtccaaaagactcaaagatataatattattcgttatgtgtggaa----catgtctaactttattcaatgtacat |
284 |
Q |
| |
|
||| ||| ||||| ||||| ||||||||||||||||| |||||| | ||| || | ||||||| || |||||||||||| |||| ||||||| |
|
|
| T |
9009118 |
tcacctttcaaactgaaccctgtcttgtccaaaagactcggagatatcagattcttggacatgtgtgaaacatgcatgtctaacttcgttcagtgtacat |
9009217 |
T |
|
| Q |
285 |
aatttaccatcacgagtactaatcttgatagagctc--tccaaccattttgcaaacataactattggccataacaatattaccaccattgaattgctcat |
382 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| | |||||||| ||||||||| |||| |||| |||| ||||||| ||||||| || | ||||| |
|
|
| T |
9009218 |
aatttaccatcatgagtcctaatcttgatagagcccatcccaaccatcttgcaaacagaactgttggtcatagcaatattgccaccatccaactactcat |
9009317 |
T |
|
| Q |
383 |
aggttgaaagtcattctctcataagacaaatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtga |
465 |
Q |
| |
|
| | ||||| |||||||||| || ||| |||||||||||| ||| ||||| | |||||||||||| |||||||||||||| |
|
|
| T |
9009318 |
atgatgaaaatcattctctcctaggacgaatatgataagattctccagaatccaaaacccacacatcggtgtaatgtgtgtga |
9009400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 148
Target Start/End: Original strand, 53471252 - 53471311
Alignment:
| Q |
89 |
atcagataacgtagtaccttgtagaaagtaaaaagtaccttgcttcacacctttcaaaat |
148 |
Q |
| |
|
||||| || ||||||||||||||||||||| | |||||| |||||||||||||||||| |
|
|
| T |
53471252 |
atcagttagcgtagtaccttgtagaaagtacagagtacccctcttcacacctttcaaaat |
53471311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University