View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1365_high_8 (Length: 545)

Name: NF1365_high_8
Description: NF1365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1365_high_8
NF1365_high_8
[»] chr7 (2 HSPs)
chr7 (301-507)||(12909679-12909885)
chr7 (5-168)||(12909387-12909549)
[»] chr2 (6 HSPs)
chr2 (302-507)||(13893204-13893409)
chr2 (301-507)||(14033823-14034029)
chr2 (5-168)||(13892910-13893073)
chr2 (5-158)||(14033035-14033188)
chr2 (5-168)||(14033530-14033693)
chr2 (83-150)||(40254710-40254777)
[»] chr8 (10 HSPs)
chr8 (301-507)||(44239289-44239495)
chr8 (5-168)||(44238996-44239159)
chr8 (302-406)||(190214-190321)
chr8 (302-406)||(717818-717925)
chr8 (302-406)||(878925-879032)
chr8 (302-406)||(30983819-30983926)
chr8 (83-150)||(189999-190066)
chr8 (83-150)||(717603-717670)
chr8 (83-150)||(878710-878777)
chr8 (83-150)||(30984074-30984141)
[»] chr5 (9 HSPs)
chr5 (301-507)||(33229655-33229861)
chr5 (301-507)||(27738790-27738996)
chr5 (301-507)||(39236339-39236546)
chr5 (5-168)||(21022410-21022572)
chr5 (5-168)||(27739126-27739291)
chr5 (14-168)||(39236673-39236827)
chr5 (5-162)||(33229362-33229519)
chr5 (5-168)||(7073052-7073215)
chr5 (380-507)||(7072806-7072940)
[»] chr4 (5 HSPs)
chr4 (301-477)||(52057705-52057882)
chr4 (5-168)||(52058012-52058192)
chr4 (302-406)||(24037579-24037686)
chr4 (83-150)||(24037834-24037901)
chr4 (83-119)||(39382761-39382797)
[»] chr1 (6 HSPs)
chr1 (301-471)||(35605264-35605431)
chr1 (5-168)||(35604972-35605135)
chr1 (5-168)||(46406579-46406742)
chr1 (302-406)||(26821642-26821749)
chr1 (83-150)||(38843517-38843584)
chr1 (361-395)||(46406752-46406786)
[»] chr3 (6 HSPs)
chr3 (5-168)||(31813559-31813722)
chr3 (302-406)||(51128532-51128639)
chr3 (301-341)||(31813854-31813894)
chr3 (83-150)||(47141174-47141241)
chr3 (83-150)||(51128787-51128854)
chr3 (83-150)||(52692293-52692360)


Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 301 - 507
Target Start/End: Original strand, 12909679 - 12909885
Alignment:
Q  301 ctgcaatgcttataaaatttgtttggttgcataatataacatctcttatgaatttctacaaacaaaaaatattgtattatatgtgtttgataaaatgtct 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12909679 ctgcaatgcttataaaatttgtttggttgcataatataacatctcttatgaatttctacaaacaaaaaatattgcattatatgtgtttgataaaatgtct 12909778  T
Q  401 cttagagcttaaagtgattttttatgaaaattatgcagttagtaacttaaatatttatgctaaagtgtttgaatgtaattttaaacactagtttaaaatg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12909779 cttagagcttaaagtgattttttatgaaaattatgcagttagtaacttaaatatttatgctaaagtgtttgaatgtaattttaaacactagtttaaaatg 12909878  T
Q  501 aacactt 507  Q
    |||||||    
T  12909879 aacactt 12909885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 5 - 168
Target Start/End: Original strand, 12909387 - 12909549
Alignment:
Q  5 tctccaataatatttgcttttttctacctggaaccttaaattcattcactccgctgtccacttttctcttgctagaactcaaccacccttcacaaattta 104  Q
    |||||||  |||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  12909387 tctccaaccatatttgcttttttctacttggaaccttaaattcattcaatccactgtccacttttctctagctagaactcaaccacccttcacaaattta 12909486  T
Q  105 atctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12909487 atctaaaaatttattgctattaggttatataacaacaccacctcc-gctagcaaatattgtgct 12909549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 302 - 507
Target Start/End: Original strand, 13893204 - 13893409
Alignment:
Q  302 tgcaatgcttataaaatttgtttggttgcataatataacatctcttatgaatttctacaaacaaaaaatattgtattatatgtgtttgataaaatgtctc 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13893204 tgcaatgcttataaaatttgtttggttgcataatataacatctcttatgaatttctacaaacaaaaaatattgcattatatgtgtttgataaaatgtctc 13893303  T
Q  402 ttagagcttaaagtgattttttatgaaaattatgcagttagtaacttaaatatttatgctaaagtgtttgaatgtaattttaaacactagtttaaaatga 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13893304 ttagagcttaaagtgattttttatgaaaattatgcagttagtaacttaaatatttatgctaaagtgtttgaatgtaattttaaacactagtttaaaatga 13893403  T
Q  502 acactt 507  Q
    ||||||    
T  13893404 acactt 13893409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 301 - 507
Target Start/End: Original strand, 14033823 - 14034029
Alignment:
Q  301 ctgcaatgcttataaaatttgtttggttgcataatataacatctcttatgaatttctacaaacaaaaaatattgtattatatgtgtttgataaaatgtct 400  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14033823 ctgcaatgcttataaaatttgtttggttgcatagtataacatctcttatgaatttctacaaacaaaaaatattgcattatatgtgtttgataaaatgtct 14033922  T
Q  401 cttagagcttaaagtgattttttatgaaaattatgcagttagtaacttaaatatttatgctaaagtgtttgaatgtaattttaaacactagtttaaaatg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14033923 cttagagcttaaagtgattttttatgaaaattatgcagttagtaacttaaatatttatgctaaagtgtttgaatgtaattttaaacactagtttaaaatg 14034022  T
Q  501 aacactt 507  Q
    |||||||    
T  14034023 aacactt 14034029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 5 - 168
Target Start/End: Original strand, 13892910 - 13893073
Alignment:
Q  5 tctccaataatatttgcttttttctacctggaaccttaaattcattcactccgctgtccacttttctcttgctagaactcaaccacccttcacaaattta 104  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  13892910 tctccaaccatatttgcttttttctacctggaaccttaaattcattcactccactgtccagttttctctagctagaactcaaccacccttcacaaattta 13893009  T
Q  105 atctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 168  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13893010 atctaaaaatttattgctattaggttatataaaaacaccacctcctgctagcaaatattgtgct 13893073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 5 - 158
Target Start/End: Original strand, 14033035 - 14033188
Alignment:
Q  5 tctccaataatatttgcttttttctacctggaaccttaaattcattcactccgctgtccacttttctcttgctagaactcaaccacccttcacaaattta 104  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  14033035 tctccaaccatatttgcttttttctacctggaaccttaaattcattcactccactgtccagttttctctagctagaactcaaccacccttcacaaattta 14033134  T
Q  105 atctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaa 158  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14033135 atctaaaaatttattgctattaggttatataaaaacaccacctcctgctagcaa 14033188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 5 - 168
Target Start/End: Original strand, 14033530 - 14033693
Alignment:
Q  5 tctccaataatatttgcttttttctacctggaaccttaaattcattcactccgctgtccacttttctcttgctagaactcaaccacccttcacaaattta 104  Q
    |||||||  ||||||| |||| ||||| |||||||||||||||||||| ||| ||||| |||||||||| ||||||||||||||||||||||||||||||    
T  14033530 tctccaaccatatttgattttatctacatggaaccttaaattcattcaatccactgtcaacttttctctagctagaactcaaccacccttcacaaattta 14033629  T
Q  105 atctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14033630 atctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 14033693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 40254710 - 40254777
Alignment:
Q  83 tcaaccacccttcacaaatttaatctaaaaatttattgctattaggttatataacaacaccacctcct 150  Q
    ||||||||||||| ||||||||||| ||||||||||| | || || ||||||||||||| || |||||    
T  40254710 tcaaccacccttcccaaatttaatccaaaaatttattaccatcagcttatataacaacatcatctcct 40254777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 301 - 507
Target Start/End: Original strand, 44239289 - 44239495
Alignment:
Q  301 ctgcaatgcttataaaatttgtttggttgcataatataacatctcttatgaatttctacaaacaaaaaatattgtattatatgtgtttgataaaatgtct 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44239289 ctgcaatgcttataaaatttgtttggttgcataatataacatctcttataaatttctacaaacaaaaaatattgcattatatgtgtttgataaaatgtct 44239388  T
Q  401 cttagagcttaaagtgattttttatgaaaattatgcagttagtaacttaaatatttatgctaaagtgtttgaatgtaattttaaacactagtttaaaatg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44239389 cttagagcttaaagtgattttttatgaaaattatgcagttagtaacttaaatatttatgctaaagtgtttgaatgtaattttaaacactagtttaaaatg 44239488  T
Q  501 aacactt 507  Q
    |||||||    
T  44239489 aacactt 44239495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 5 - 168
Target Start/End: Original strand, 44238996 - 44239159
Alignment:
Q  5 tctccaataatatttgcttttttctacctggaaccttaaattcattcactccgctgtccacttttctcttgctagaactcaaccacccttcacaaattta 104  Q
    |||||||  ||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||  ||||||||||||||||    
T  44238996 tctccaaccatatttgtttttttctgcctggaaccttaaattcattcactccactgtccacttttctctagctagaactcaattacccttcacaaattta 44239095  T
Q  105 atctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44239096 atctaaaaatttattgctattaggttatataacaacaccacctcctcctagcaaatattgtgct 44239159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 302 - 406
Target Start/End: Original strand, 190214 - 190321
Alignment:
Q  302 tgcaatgcttataaaatttgtttggttgcataatataacatctcttatgaatttctacaaacaaaaaatat---tgtattatatgtgtttgataaaatgt 398  Q
    ||||||||||||||||||||||||||| |||||  ||  | ||||||| ||||| ||||||  ||||||||   || ||| |||||||||||||||||||    
T  190214 tgcaatgcttataaaatttgtttggttccataaattagtacctcttattaatttatacaaaggaaaaatattgctgcattgtatgtgtttgataaaatgt 190313  T
Q  399 ctcttaga 406  Q
    ||||||||    
T  190314 ctcttaga 190321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 302 - 406
Target Start/End: Original strand, 717818 - 717925
Alignment:
Q  302 tgcaatgcttataaaatttgtttggttgcataatataacatctcttatgaatttctacaaacaaaaaatat---tgtattatatgtgtttgataaaatgt 398  Q
    ||||||||||||||||||||||||||| |||||  ||  | ||||||| ||||| ||||||  ||||||||   || ||| |||||||||||||||||||    
T  717818 tgcaatgcttataaaatttgtttggttccataaattagtacctcttattaatttatacaaaggaaaaatattgctgcattgtatgtgtttgataaaatgt 717917  T
Q  399 ctcttaga 406  Q
    ||||||||    
T  717918 ctcttaga 717925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 302 - 406
Target Start/End: Original strand, 878925 - 879032
Alignment:
Q  302 tgcaatgcttataaaatttgtttggttgcataatataacatctcttatgaatttctacaaacaaaaaatat---tgtattatatgtgtttgataaaatgt 398  Q
    ||||||||||||||||||||||||||| |||||  ||  | ||||||| ||||| ||||||  ||||||||   || ||| |||||||||||||||||||    
T  878925 tgcaatgcttataaaatttgtttggttccataaattagtacctcttattaatttatacaaaggaaaaatattgctgcattgtatgtgtttgataaaatgt 879024  T
Q  399 ctcttaga 406  Q
    ||||||||    
T  879025 ctcttaga 879032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 30983926 - 30983819
Alignment:
Q  302 tgcaatgcttataaaatttgtttggttgcataatataacatctcttatgaatttctacaaacaaaaaatat---tgtattatatgtgtttgataaaatgt 398  Q
    ||||||||||||||||||||||||||| |||||  ||  | ||||||| ||||| ||||||  ||||||||   || ||| |||||||||||||||||||    
T  30983926 tgcaatgcttataaaatttgtttggttccataaattagtacctcttattaatttatacaaaggaaaaatattgctgcattgtatgtgtttgataaaatgt 30983827  T
Q  399 ctcttaga 406  Q
    ||||||||    
T  30983826 ctcttaga 30983819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 189999 - 190066
Alignment:
Q  83 tcaaccacccttcacaaatttaatctaaaaatttattgctattaggttatataacaacaccacctcct 150  Q
    ||||||||||||| ||||||||||| ||||||||||| | || || ||||||||||||| || |||||    
T  189999 tcaaccacccttcccaaatttaatccaaaaatttattaccatcagcttatataacaacatcatctcct 190066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 717603 - 717670
Alignment:
Q  83 tcaaccacccttcacaaatttaatctaaaaatttattgctattaggttatataacaacaccacctcct 150  Q
    ||||||||||||| ||||||||||| ||||||||||| | || || ||||||||||||| || |||||    
T  717603 tcaaccacccttcccaaatttaatccaaaaatttattaccatcagcttatataacaacatcatctcct 717670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 878710 - 878777
Alignment:
Q  83 tcaaccacccttcacaaatttaatctaaaaatttattgctattaggttatataacaacaccacctcct 150  Q
    ||||||||||||| ||||||||||| ||||||||||| | || || ||||||||||||| || |||||    
T  878710 tcaaccacccttcccaaatttaatccaaaaatttattaccatcagcttatataacaacatcatctcct 878777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 30984141 - 30984074
Alignment:
Q  83 tcaaccacccttcacaaatttaatctaaaaatttattgctattaggttatataacaacaccacctcct 150  Q
    ||||||||||||| ||||||||||| ||||||||||| | || || ||||||||||||| || |||||    
T  30984141 tcaaccacccttcccaaatttaatccaaaaatttattaccatcagcttatataacaacatcatctcct 30984074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 301 - 507
Target Start/End: Original strand, 33229655 - 33229861
Alignment:
Q  301 ctgcaatgcttataaaatttgtttggttgcataatataacatctcttatgaatttctacaaacaaaaaatattgtattatatgtgtttgataaaatgtct 400  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33229655 ctgcaatgcttataaaatttgtttggttgcatagtataacatctcttatgaatttctacaaacaaaaaatattgcattatatgtgtttgataaaatgtct 33229754  T
Q  401 cttagagcttaaagtgattttttatgaaaattatgcagttagtaacttaaatatttatgctaaagtgtttgaatgtaattttaaacactagtttaaaatg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33229755 cttagagcttaaagtgattttttatgaaaattatgcagttagtaacttaaatatttatgctaaagtgtttgaatgtaattttaaacactagtttaaaatg 33229854  T
Q  501 aacactt 507  Q
    |||||||    
T  33229855 aacactt 33229861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 301 - 507
Target Start/End: Complemental strand, 27738996 - 27738790
Alignment:
Q  301 ctgcaatgcttataaaatttgtttggttgcataatataacatctcttatgaatttctacaaacaaaaaatattgtattatatgtgtttgataaaatgtct 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27738996 ctgcaatgcttataaaatttgtttggttgcataatataacatctcttattcatttctacaaacaaaaaatattgcattatatgtgtttgataaaatgtct 27738897  T
Q  401 cttagagcttaaagtgattttttatgaaaattatgcagttagtaacttaaatatttatgctaaagtgtttgaatgtaattttaaacactagtttaaaatg 500  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27738896 cttagagtttaaagtgattttttatgaaaattatacagttagtaacttaaatatttatgctaaagtgtttgaatgtaattttaaacactagtttaaaatg 27738797  T
Q  501 aacactt 507  Q
    |||||||    
T  27738796 aacactt 27738790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 301 - 507
Target Start/End: Complemental strand, 39236546 - 39236339
Alignment:
Q  301 ctgcaatgcttataaaatttgtttggttgcataatataacatctcttatgaatttctacaaacaaaaaa-tattgtattatatgtgtttgataaaatgtc 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  39236546 ctgcaatgcttataaaatttgtttggttgcataatataacatctcttatgaatttctacaaataaaaaaatattgcattatatgtgtttgataaaatgtc 39236447  T
Q  400 tcttagagcttaaagtgattttttatgaaaattatgcagttagtaacttaaatatttatgctaaagtgtttgaatgtaattttaaacactagtttaaaat 499  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39236446 tcttagagcttaaagtgattttttatgaaaattatgcggttagtaacttaaatatttatggtaaagtgtttgaatgtaattttaaacactagtttaaaat 39236347  T
Q  500 gaacactt 507  Q
    ||||||||    
T  39236346 gaacactt 39236339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 5 - 168
Target Start/End: Complemental strand, 21022572 - 21022410
Alignment:
Q  5 tctccaataatatttgcttttttctacctggaaccttaaattcattcactccgctgtccacttttctcttgctagaactcaaccacccttcacaaattta 104  Q
    |||||||  |||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||    
T  21022572 tctccaaccatatttgctttttt-tacctggaaccttaaattcattcactccactttccacttttctctagctagaactcaaccacccttcacaaattta 21022474  T
Q  105 atctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21022473 atctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 21022410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 5 - 168
Target Start/End: Complemental strand, 27739291 - 27739126
Alignment:
Q  5 tctccaataatatttgcttttttctacctggaaccttaaattcattcactccgc--tgtccacttttctcttgctagaactcaaccacccttcacaaatt 102  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||| | ||||||||||||||||||||||||||    
T  27739291 tctccaaccatatttgcttttttctacctggaaccttaaattcattcactccacactgtccacttttctctagttagaactcaaccacccttcacaaatt 27739192  T
Q  103 taatctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27739191 taatctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 27739126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 14 - 168
Target Start/End: Complemental strand, 39236827 - 39236673
Alignment:
Q  14 atatttgcttttttctacctggaaccttaaattcattcactccgctgtccacttttctcttgctagaactcaaccacccttcacaaatttaatctaaaaa 113  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||| ||||||| ||||||||||||||||| ||||||||    
T  39236827 atatttgcttttttctacctgaaaccttaaattcattcactccactgtccacttttctctagctataactcaatcacccttcacaaatttactctaaaaa 39236728  T
Q  114 tttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39236727 tttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 39236673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 5 - 162
Target Start/End: Original strand, 33229362 - 33229519
Alignment:
Q  5 tctccaataatatttgcttttttctacctggaaccttaaattcattcactccgctgtccacttttctcttgctagaactcaaccacccttcacaaattta 104  Q
    |||||||  ||||||| |||| ||||||||||||||||||||||||| |||| ||||| |||||||||| ||||||||||||||||||||||||||||||    
T  33229362 tctccaaccatatttgtttttctctacctggaaccttaaattcattcgctccactgtctacttttctctagctagaactcaaccacccttcacaaattta 33229461  T
Q  105 atctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatat 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33229462 atctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatat 33229519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 5 - 168
Target Start/End: Complemental strand, 7073215 - 7073052
Alignment:
Q  5 tctccaataatatttgcttttttctacctggaaccttaaattcattcactccgctgtccacttttctcttgctagaactcaaccacccttcacaaattta 104  Q
    |||||||  ||||||||||||||||||| | ||| |||||||||||||||    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  7073215 tctccaaccatatttgcttttttctacccgtaacgttaaattcattcactttagtgtccacttttctctagctagaactcaaccacccttcacaaattta 7073116  T
Q  105 atctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 168  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7073115 atctgaaaatttattgctattaggttatataacaacaacacctcctgctagcaaatattgtgct 7073052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 380 - 507
Target Start/End: Complemental strand, 7072940 - 7072806
Alignment:
Q  380 tatgtgtttgataaaatgtctcttagagcttaaagtgattttttatgaaaattatgcagttagtaacttaa------atatttatgctaaagtgtttgaa 473  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||      |||||||||||||||||||||||    
T  7072940 tatgtgtttgataaaatgtctattagagcttaaactgattttttatgaaaattatgcagttaggaacttaaatataaatatttatgctaaagtgtttgaa 7072841  T
Q  474 tgtaattttaaacactag-tttaaaatgaacactt 507  Q
     ||||||||||||||||| |||| |||||||||||    
T  7072840 cgtaattttaaacactagttttagaatgaacactt 7072806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 1e-76; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 301 - 477
Target Start/End: Complemental strand, 52057882 - 52057705
Alignment:
Q  301 ctgcaatgcttataaaatttgtttggttgcataatataacatctcttatgaatttctacaaacaaaaaatattgtattatatgtgtttgataaaatgtct 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  52057882 ctgcaatgcttataaaatttgtttggttgcataatataacatctcttatgaatttctacaaacaaaaacaattgtattatatgtgtttgataaaatgtct 52057783  T
Q  401 cttagagcttaaagtgatt-ttttatgaaaattatgcagttagtaacttaaatatttatgctaaagtgtttgaatgta 477  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||  |||||||||||||||||    
T  52057782 cttagagcttaaagtgatttttttatgaaaattatgtagttagtaatttaaatatttattgtaaagtgtttgaatgta 52057705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 5 - 168
Target Start/End: Complemental strand, 52058192 - 52058012
Alignment:
Q  5 tctccaataatatttgcttttttctacctggaaccttaaattcattcactccgctgtccacttttctcttgctagaactcaaccacccttcacaaattta 104  Q
    |||||||  |||||||||||||||||| || ||| ||||||||||||||| | |||| ||||||||||| |||| |||||||||||||||||||||||||    
T  52058192 tctccaaccatatttgcttttttctacttgaaacgttaaattcattcacttcactgttcacttttctctagctataactcaaccacccttcacaaattta 52058093  T
Q  105 -----------------atctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 168  Q
                     |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  52058092 atctgaaaataaatttaatctgaaaatttattgctattaggttatataacaacaccacctcctactagcaaatattgtgct 52058012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 24037686 - 24037579
Alignment:
Q  302 tgcaatgcttataaaatttgtttggttgcataatataacatctcttatgaatttctacaaacaaaaaatat---tgtattatatgtgtttgataaaatgt 398  Q
    ||||||||||||||||||||||||||| |||||  ||  | ||||||| ||||| ||||||  ||||||||   || ||| |||||||||||||||||||    
T  24037686 tgcaatgcttataaaatttgtttggttccataaattagtacctcttattaatttatacaaaggaaaaatattgctgcattgtatgtgtttgataaaatgt 24037587  T
Q  399 ctcttaga 406  Q
    ||||||||    
T  24037586 ctcttaga 24037579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 24037901 - 24037834
Alignment:
Q  83 tcaaccacccttcacaaatttaatctaaaaatttattgctattaggttatataacaacaccacctcct 150  Q
    ||||||||||||| ||||||||||| ||||||||||| | || || ||||||||||||| || |||||    
T  24037901 tcaaccacccttcccaaatttaatccaaaaatttattaccatcagcttatataacaacatcatctcct 24037834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 39382797 - 39382761
Alignment:
Q  83 tcaaccacccttcacaaatttaatctaaaaatttatt 119  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  39382797 tcaaccacccttcccaaatttaatccaaaaatttatt 39382761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 144; Significance: 2e-75; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 301 - 471
Target Start/End: Original strand, 35605264 - 35605431
Alignment:
Q  301 ctgcaatgcttataaaatttgtttggttgcataatataacatctcttatgaatttctacaaacaaaaaatattgtattatatgtgtttgataaaatgtct 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35605264 ctgcaatgcttataaaatttgtttggttgcataatataacatctcttatgaatttctacaaacaaaaaatattgtattatatgtatttgataaaatgtct 35605363  T
Q  401 cttagagcttaaagtgattttttatgaaaattatgcagttagtaacttaaatatttatgctaaagtgtttg 471  Q
    |||  || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35605364 ctt--agtttaaagtga-tttttatgaaaattatgcagttagtaacttaaatatttatgctaaagtgtttg 35605431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 5 - 168
Target Start/End: Original strand, 35604972 - 35605135
Alignment:
Q  5 tctccaataatatttgcttttttctacctggaaccttaaattcattcactccgctgtccacttttctcttgctagaactcaaccacccttcacaaattta 104  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||| | |||| ||||||||||| ||||||||||||||||||||||||||||||    
T  35604972 tctccaatcatatttgcttttttctacctggaacgttaaattcattcacttcactgttcacttttctctagctagaactcaaccacccttcacaaattta 35605071  T
Q  105 atctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 168  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35605072 atctgaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 35605135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 5 - 168
Target Start/End: Original strand, 46406579 - 46406742
Alignment:
Q  5 tctccaataatatttgcttttttctacctggaaccttaaattcattcactccgctgtccacttttctcttgctagaactcaaccacccttcacaaattta 104  Q
    |||||||  ||||||||||||||||||||| ||||||||||||||||| ||| || ||||||||||||| ||||||||||||||||||||||||||||||    
T  46406579 tctccaaccatatttgcttttttctacctgaaaccttaaattcattcagtccactatccacttttctctagctagaactcaaccacccttcacaaattta 46406678  T
Q  105 atctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 168  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  46406679 atctaaaaatttattgctattaagttatataacaacaccacctcttgctagcaaatattgtgct 46406742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 302 - 406
Target Start/End: Original strand, 26821642 - 26821749
Alignment:
Q  302 tgcaatgcttataaaatttgtttggttgcataatataacatctcttatgaatttctacaaacaaaaaatat---tgtattatatgtgtttgataaaatgt 398  Q
    ||||||||||||||||||||||||||| |||||  ||  | ||||||| ||||| ||||||  ||||||||   || ||| |||||||||||||||||||    
T  26821642 tgcaatgcttataaaatttgtttggttccataaattagtacctcttattaatttatacaaaggaaaaatattgctgcattgtatgtgtttgataaaatgt 26821741  T
Q  399 ctcttaga 406  Q
    ||||||||    
T  26821742 ctcttaga 26821749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 38843517 - 38843584
Alignment:
Q  83 tcaaccacccttcacaaatttaatctaaaaatttattgctattaggttatataacaacaccacctcct 150  Q
    ||||||||||||| ||||||||||| ||||||||||| | || || ||||||||||||| || |||||    
T  38843517 tcaaccacccttcccaaatttaatccaaaaatttattaccatcagcttatataacaacatcatctcct 38843584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 395
Target Start/End: Original strand, 46406752 - 46406786
Alignment:
Q  361 aacaaaaaatattgtattatatgtgtttgataaaa 395  Q
    |||||||||||||| ||||||||||||||||||||    
T  46406752 aacaaaaaatattgcattatatgtgtttgataaaa 46406786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 3e-68; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 5 - 168
Target Start/End: Original strand, 31813559 - 31813722
Alignment:
Q  5 tctccaataatatttgcttttttctacctggaaccttaaattcattcactccgctgtccacttttctcttgctagaactcaaccacccttcacaaattta 104  Q
    |||||||  ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  31813559 tctccaaccatatttgcttttttctacctgaaaccttaaattcattcactccactgtccacttttctctagctagaactcaaccacccttcacaaattta 31813658  T
Q  105 atctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 168  Q
    |||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  31813659 atctaaaaatttgttgcaattaggttatataacaacaccacctcctactagcaaatattgtgct 31813722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 51128639 - 51128532
Alignment:
Q  302 tgcaatgcttataaaatttgtttggttgcataatataacatctcttatgaatttctacaaacaaaaaatat---tgtattatatgtgtttgataaaatgt 398  Q
    ||||||||||||||||||||||||||| |||||  ||  | ||||||| ||||| ||||||  ||||||||   || ||| |||||||||||||||||||    
T  51128639 tgcaatgcttataaaatttgtttggttccataaattagtacctcttattaatttatacaaaggaaaaatattgctgcattgtatgtgtttgataaaatgt 51128540  T
Q  399 ctcttaga 406  Q
    ||||||||    
T  51128539 ctcttaga 51128532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 31813854 - 31813894
Alignment:
Q  301 ctgcaatgcttataaaatttgtttggttgcataatataaca 341  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31813854 ctgcaatgcttataaaatttgtttggttgcataatataaca 31813894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 47141241 - 47141174
Alignment:
Q  83 tcaaccacccttcacaaatttaatctaaaaatttattgctattaggttatataacaacaccacctcct 150  Q
    ||||||||||||| ||||||||||| ||||||||||| | || || ||||||||||||| || |||||    
T  47141241 tcaaccacccttcccaaatttaatccaaaaatttattaccatcagcttatataacaacatcatctcct 47141174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 51128854 - 51128787
Alignment:
Q  83 tcaaccacccttcacaaatttaatctaaaaatttattgctattaggttatataacaacaccacctcct 150  Q
    ||||||||||||| ||||||||||| ||||||||||| | || || ||||||||||||| || |||||    
T  51128854 tcaaccacccttcccaaatttaatccaaaaatttattaccatcagcttatataacaacatcatctcct 51128787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 52692293 - 52692360
Alignment:
Q  83 tcaaccacccttcacaaatttaatctaaaaatttattgctattaggttatataacaacaccacctcct 150  Q
    ||||||||||||| ||||||||||| ||||||||||| | || || ||||||||||||| || |||||    
T  52692293 tcaaccacccttcccaaatttaatccaaaaatttattaccatcagcttatataacaacatcatctcct 52692360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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