View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1365_low_11 (Length: 508)

Name: NF1365_low_11
Description: NF1365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1365_low_11
NF1365_low_11
[»] chr1 (32 HSPs)
chr1 (30-446)||(37295657-37296090)
chr1 (288-354)||(49888740-49888806)
chr1 (288-335)||(7218124-7218171)
chr1 (292-329)||(11218001-11218038)
chr1 (288-332)||(473137-473181)
chr1 (288-340)||(24915096-24915148)
chr1 (288-332)||(25006087-25006131)
chr1 (288-332)||(34952188-34952232)
chr1 (288-332)||(36070223-36070267)
chr1 (288-332)||(49517043-49517087)
chr1 (288-332)||(51538895-51538939)
chr1 (288-331)||(38018418-38018461)
chr1 (288-331)||(49557114-49557157)
chr1 (290-332)||(27976570-27976612)
chr1 (288-330)||(29128353-29128395)
chr1 (296-373)||(5421932-5422009)
chr1 (297-354)||(7244689-7244746)
chr1 (287-332)||(29793754-29793799)
chr1 (288-325)||(37841971-37842008)
chr1 (287-332)||(38578499-38578544)
chr1 (290-333)||(1813848-1813889)
chr1 (296-332)||(6110220-6110256)
chr1 (280-332)||(8130401-8130453)
chr1 (288-332)||(10581130-10581174)
chr1 (300-332)||(15515526-15515558)
chr1 (288-332)||(17269223-17269267)
chr1 (288-332)||(27738233-27738277)
chr1 (296-332)||(30371129-30371165)
chr1 (288-340)||(31517785-31517837)
chr1 (288-340)||(37769705-37769757)
chr1 (288-332)||(37842408-37842452)
chr1 (290-334)||(40394936-40394980)
[»] chr6 (9 HSPs)
chr6 (288-343)||(9093598-9093653)
chr6 (290-332)||(415279-415321)
chr6 (288-333)||(6909924-6909969)
chr6 (288-332)||(7485121-7485165)
chr6 (288-332)||(4006687-4006731)
chr6 (287-331)||(5550104-5550148)
chr6 (288-332)||(10476174-10476218)
chr6 (288-332)||(20671918-20671962)
chr6 (288-332)||(33828619-33828663)
[»] chr2 (15 HSPs)
chr2 (288-329)||(42907332-42907373)
chr2 (288-332)||(1625873-1625917)
chr2 (288-330)||(9750919-9750961)
chr2 (288-332)||(11513871-11513915)
chr2 (288-332)||(18066101-18066145)
chr2 (288-332)||(35755555-35755599)
chr2 (288-332)||(43199387-43199431)
chr2 (290-332)||(26626848-26626890)
chr2 (288-354)||(42457921-42457987)
chr2 (288-326)||(43199852-43199890)
chr2 (291-332)||(40279173-40279214)
chr2 (288-329)||(41851508-41851549)
chr2 (288-332)||(6167336-6167380)
chr2 (288-332)||(10494641-10494685)
chr2 (288-332)||(33942123-33942167)
[»] chr4 (10 HSPs)
chr4 (288-332)||(25885832-25885876)
chr4 (288-354)||(27043861-27043927)
chr4 (288-332)||(6927546-6927590)
chr4 (291-343)||(35571673-35571725)
chr4 (291-331)||(47946174-47946214)
chr4 (290-331)||(47119019-47119060)
chr4 (288-341)||(49219112-49219165)
chr4 (288-332)||(17884041-17884085)
chr4 (288-320)||(26520294-26520326)
chr4 (288-332)||(52746893-52746937)
[»] chr8 (13 HSPs)
chr8 (288-332)||(34770865-34770909)
chr8 (291-332)||(24558829-24558870)
chr8 (288-332)||(778362-778406)
chr8 (288-332)||(7918826-7918870)
chr8 (288-335)||(16210936-16210983)
chr8 (288-330)||(773302-773344)
chr8 (288-330)||(787796-787838)
chr8 (288-330)||(2093252-2093294)
chr8 (288-353)||(2595029-2595094)
chr8 (288-332)||(447364-447408)
chr8 (296-332)||(7645959-7645995)
chr8 (296-332)||(9834842-9834878)
chr8 (288-332)||(42597374-42597418)
[»] chr5 (16 HSPs)
chr5 (288-354)||(12425544-12425610)
chr5 (291-332)||(10272484-10272525)
chr5 (291-332)||(42646891-42646932)
chr5 (288-332)||(6587160-6587204)
chr5 (290-332)||(2568632-2568675)
chr5 (291-354)||(39105440-39105503)
chr5 (294-332)||(37914732-37914770)
chr5 (288-330)||(40452264-40452306)
chr5 (290-335)||(12554494-12554539)
chr5 (287-332)||(42569730-42569775)
chr5 (288-332)||(1619063-1619107)
chr5 (288-332)||(4855671-4855715)
chr5 (294-330)||(5559704-5559740)
chr5 (288-332)||(9202801-9202845)
chr5 (311-351)||(15402863-15402903)
chr5 (288-332)||(42583122-42583166)
[»] chr3 (12 HSPs)
chr3 (288-354)||(21367640-21367706)
chr3 (288-332)||(14145885-14145929)
chr3 (288-330)||(35450563-35450605)
chr3 (288-330)||(48397619-48397661)
chr3 (288-329)||(30956682-30956723)
chr3 (288-329)||(30972494-30972535)
chr3 (288-332)||(10101529-10101573)
chr3 (288-332)||(10212454-10212498)
chr3 (291-343)||(20669595-20669647)
chr3 (290-354)||(28622030-28622094)
chr3 (288-332)||(33405220-33405264)
chr3 (288-332)||(41057011-41057055)
[»] scaffold0475 (1 HSPs)
scaffold0475 (289-326)||(11814-11851)
[»] chr7 (9 HSPs)
chr7 (295-372)||(18350720-18350797)
chr7 (291-354)||(20881667-20881730)
chr7 (288-327)||(30180024-30180063)
chr7 (288-338)||(30496677-30496727)
chr7 (288-332)||(1417237-1417281)
chr7 (288-332)||(12110333-12110377)
chr7 (288-332)||(27548236-27548280)
chr7 (288-332)||(34083578-34083622)
chr7 (288-332)||(39967893-39967937)
[»] scaffold0024 (1 HSPs)
scaffold0024 (288-332)||(27549-27593)


Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 30 - 446
Target Start/End: Complemental strand, 37296090 - 37295657
Alignment:
Q  30 gattttgattgaaagctgttttcacttttcagcgtatgattattaatttta-----------------tgtgtttttgttgttgctactaggaagagaaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||||    
T  37296090 gattttgattgaaagctgttttcacttttcagcgtatgattattaattttaattttaaggttattttatgtgtttttgttgttgctactaggaagagaaa 37295991  T
Q  113 cgagaattgtatgtaatcggcaattgggatttgtgatgtatagattattgagatctttaagccaaatttaaattgtttgcctttaaccaagagaagattt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||    
T  37295990 cgagaattgtatgtaatcggcaattgggatttgtgatgtatagattattgagatctttaacccgaatttaaattgtttgcctttaactaagagaagattt 37295891  T
Q  213 ttataagatttgtaccactaagccaggcccttttggaataaacagcttaatttgcagcttatgctagcttacagcataaagttaaattgttttcgtttaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37295890 ttataagatttgtaccactaagccaggcccttttggaataaacagcttaatctgcagcttatgctagcttacagcataaagttaaattgttttcgtttaa 37295791  T
Q  313 gctataagttgttttcataacctgtcttagaaaacgtatgaacatgttttaagctgtttttgtcacacaacttgtgtcagtagataataagccaatccaa 412  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37295790 gctataagttgttttcataacctatcttagaaaacgtatgaacatgttttaagctgtttttgtcacacaacttgtgtcagtagataataagccaatccaa 37295691  T
Q  413 acaggcttaattctttgcctcttaactccctatg 446  Q
    ||||||||||||||||||||||||||||| ||||    
T  37295690 acaggcttaattctttgcctcttaactccatatg 37295657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 288 - 354
Target Start/End: Original strand, 49888740 - 49888806
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataacctgtcttagaaaacgtatgaa 354  Q
    |||||||| |||||||||||| |||||||| |||||||||||||| || ||||||| ||| ||||||    
T  49888740 ataaagtttaattgttttcgtataagctattagttgttttcataagctatcttagagaacttatgaa 49888806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 288 - 335
Target Start/End: Complemental strand, 7218171 - 7218124
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataacct 335  Q
    ||||||| ||||||||||| | ||||||||||||||||||||||||||    
T  7218171 ataaagtcaaattgttttcatataagctataagttgttttcataacct 7218124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 11218038 - 11218001
Alignment:
Q  292 agttaaattgttttcgtttaagctataagttgttttca 329  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  11218038 agttaaattgttttcgtataagctataagttgttttca 11218001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 473137 - 473181
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||||||||||||||||| || ||||||||||||||| ||||    
T  473137 ataaagttaaattgttttcgtgtatgctataagttgtttttataa 473181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 340
Target Start/End: Complemental strand, 24915148 - 24915096
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataacctgtctt 340  Q
    |||||||||||||||||| || || |||||||| ||||||||||| |||||||    
T  24915148 ataaagttaaattgtttttgtatatgctataagctgttttcataagctgtctt 24915096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 25006131 - 25006087
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||| ||||||||||| | |||||||||||||||||||||||    
T  25006131 ataaagtcaaattgttttcatataagctataagttgttttcataa 25006087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 34952188 - 34952232
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||||||||||||||||  |||||| ||||||||||||||||    
T  34952188 ataaagttaaattgttttcgaataagctgtaagttgttttcataa 34952232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 36070223 - 36070267
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||||||||||| ||||  |||||||||||||||||||||||    
T  36070223 ataaagttaaattgtcttcggataagctataagttgttttcataa 36070267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 49517043 - 49517087
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||    
T  49517043 ataaagtcaaattgttttcatttaagctataagctgttttcataa 49517087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 51538939 - 51538895
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    |||||||||||||||||||||||||| |  |||||||||||||||    
T  51538939 ataaagttaaattgttttcgtttaagttggaagttgttttcataa 51538895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 331
Target Start/End: Complemental strand, 38018461 - 38018418
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcata 331  Q
    ||||||||||||||||||||| ||||||| ||| ||||||||||    
T  38018461 ataaagttaaattgttttcgtataagctagaagctgttttcata 38018418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 331
Target Start/End: Original strand, 49557114 - 49557157
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcata 331  Q
    |||||||||||| || ||| ||||||||||||||||||||||||    
T  49557114 ataaagttaaatagtattcatttaagctataagttgttttcata 49557157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 332
Target Start/End: Original strand, 27976570 - 27976612
Alignment:
Q  290 aaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    |||||||||||||||| || || ||||||||||||||||||||    
T  27976570 aaagttaaattgtttttgtatatgctataagttgttttcataa 27976612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 330
Target Start/End: Complemental strand, 29128395 - 29128353
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcat 330  Q
    |||||||||| || |||||||||||||||||| ||||||||||    
T  29128395 ataaagttaatttattttcgtttaagctataaattgttttcat 29128353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 373
Target Start/End: Complemental strand, 5422009 - 5421932
Alignment:
Q  296 aaattgttttcgtttaagctataagttgttttcataacctgtcttagaaaacgtatgaacatgttttaagctgttttt 373  Q
    ||||||||||| | |||||||||||||||||| |||| || ||||||| | | ||  ||||||| |||| ||||||||    
T  5422009 aaattgttttcttataagctataagttgttttgataagctatcttagagagcttacaaacatgtcttaaactgttttt 5421932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 7244746 - 7244689
Alignment:
Q  297 aattgttttcgtttaagctataagttgttttcataacctgtcttagaaaacgtatgaa 354  Q
    |||||||||||| ||||||||| ||||||||||||| |  |||| || ||||||||||    
T  7244746 aattgttttcgtataagctatacgttgttttcataagcgatcttggagaacgtatgaa 7244689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 332
Target Start/End: Original strand, 29793754 - 29793799
Alignment:
Q  287 cataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||||||| |||||||||| ||||||||||||||  |||||||    
T  29793754 cataaagttaagttgttttcgtataagctataagttgagttcataa 29793799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 325
Target Start/End: Original strand, 37841971 - 37842008
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgtt 325  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  37841971 ataaagttaaattgttttcgtataagctatatgttgtt 37842008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 332
Target Start/End: Original strand, 38578499 - 38578544
Alignment:
Q  287 cataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    |||||||||||||| |||| || ||||||||||||||||| |||||    
T  38578499 cataaagttaaattatttttgtataagctataagttgtttacataa 38578544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 333
Target Start/End: Complemental strand, 1813889 - 1813848
Alignment:
Q  290 aaagttaaattgttttcgtttaagctataagttgttttcataac 333  Q
    ||||||||||||||||||| |||  |||||||||||||||||||    
T  1813889 aaagttaaattgttttcgtataa--tataagttgttttcataac 1813848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 6110256 - 6110220
Alignment:
Q  296 aaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  6110256 aaattgttttcatttaaggtataagttgttttcataa 6110220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 332
Target Start/End: Original strand, 8130401 - 8130453
Alignment:
Q  280 cttacagcataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    |||| |||||||||| ||| |||||||   |||||||||||||||||||||||    
T  8130401 cttatagcataaagtcaaactgttttcacataagctataagttgttttcataa 8130453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 10581174 - 10581130
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||| ||| | ||||| |||||||||||||||||||||||||    
T  10581174 ataaagtcaaacttttttcatttaagctataagttgttttcataa 10581130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 332
Target Start/End: Original strand, 15515526 - 15515558
Alignment:
Q  300 tgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||||| |||||||||||||||||||||||    
T  15515526 tgttttcgtataagctataagttgttttcataa 15515558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 17269223 - 17269267
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||| ||||||||||| | ||||| |||||||||||||||||    
T  17269223 ataaagtcaaattgttttcatataagcaataagttgttttcataa 17269267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 27738277 - 27738233
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||| ||||||||||| | |||||||||| ||||||||||||    
T  27738277 ataaagtcaaattgttttcatataagctataatttgttttcataa 27738233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 30371129 - 30371165
Alignment:
Q  296 aaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||||||| | |||||||||||||||||||||||    
T  30371129 aaattgttttcatataagctataagttgttttcataa 30371165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 340
Target Start/End: Complemental strand, 31517837 - 31517785
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataacctgtctt 340  Q
    |||||||||||||| |||| | ||||||||||| ||| ||||||| |||||||    
T  31517837 ataaagttaaattgatttcatataagctataagctgtcttcataatctgtctt 31517785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 340
Target Start/End: Complemental strand, 37769757 - 37769705
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataacctgtctt 340  Q
    ||||||||||||| |||| ||||| |||| |||||||||| |||| |||||||    
T  37769757 ataaagttaaattatttttgtttatgctacaagttgtttttataagctgtctt 37769705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 37842452 - 37842408
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||||||| ||| ||||  |||||||||||||||||||||||    
T  37842452 ataaagttaaactgtgttcgaataagctataagttgttttcataa 37842408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 334
Target Start/End: Complemental strand, 40394980 - 40394936
Alignment:
Q  290 aaagttaaattgttttcgtttaagctataagttgttttcataacc 334  Q
    ||||||||||||||||| | |||  ||||||||||||||||||||    
T  40394980 aaagttaaattgttttcatataaattataagttgttttcataacc 40394936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 288 - 343
Target Start/End: Complemental strand, 9093653 - 9093598
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataacctgtcttaga 343  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||    
T  9093653 ataaagttaaattgttttcgtataagctataagctgttttcataagctgtcttaga 9093598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 332
Target Start/End: Original strand, 415279 - 415321
Alignment:
Q  290 aaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  415279 aaagttaaattgttttcgtataagctataagttgtttttataa 415321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 6909969 - 6909924
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataac 333  Q
    |||||||||||||||||| || || |||||||||||||||||||||    
T  6909969 ataaagttaaattgtttttgtatatgctataagttgttttcataac 6909924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 7485165 - 7485121
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||||||||| ||||| | |||||||||||||||||||||||    
T  7485165 ataaagttaaatttttttcatataagctataagttgttttcataa 7485121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 4006687 - 4006731
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||| ||||||||||  | |||||||||||||||||||||||    
T  4006687 ataaagtcaaattgtttttatataagctataagttgttttcataa 4006731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 331
Target Start/End: Original strand, 5550104 - 5550148
Alignment:
Q  287 cataaagttaaattgttttcgtttaagctataagttgttttcata 331  Q
    |||||||| ||||||||||| | ||||||||||| ||||||||||    
T  5550104 cataaagtcaaattgttttcatataagctataagctgttttcata 5550148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 10476218 - 10476174
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||| ||| |||||||| ||||||| ||||||||||||||||    
T  10476218 ataaagtcaaactgttttcgattaagctgtaagttgttttcataa 10476174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 20671962 - 20671918
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||| ||||||||||||| |||||| ||| ||||||||||||    
T  20671962 ataaagtcaaattgttttcgtataagctttaaattgttttcataa 20671918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 33828619 - 33828663
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||| ||||||||||||| |||| ||||||||||||| ||||    
T  33828619 ataaagtcaaattgttttcgtataagttataagttgttttaataa 33828663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 42907332 - 42907373
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttca 329  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  42907332 ataaagttaaattgttttcgtttaagctataagttgttttca 42907373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 1625873 - 1625917
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||    
T  1625873 ataaagttaaattgttttcgtataagttataagttgttttcataa 1625917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 330
Target Start/End: Original strand, 9750919 - 9750961
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcat 330  Q
    ||||||||||||||||||| | |||||||||||||||||||||    
T  9750919 ataaagttaaattgttttcttataagctataagttgttttcat 9750961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 11513871 - 11513915
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||| ||||||||||| | |||||||||||||||||||||||    
T  11513871 ataaagtcaaattgttttcatataagctataagttgttttcataa 11513915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 18066101 - 18066145
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||||||||||||||| | ||||||||||| |||||||||||    
T  18066101 ataaagttaaattgttttcatataagctataagctgttttcataa 18066145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 35755599 - 35755555
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||| ||||||||||| | |||||||||||||||||||||||    
T  35755599 ataaagtcaaattgttttcatgtaagctataagttgttttcataa 35755555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 43199387 - 43199431
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||||||||| | ||||| |||||||||||||||||||||||    
T  43199387 ataaagttaaattatcttcgtataagctataagttgttttcataa 43199431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 332
Target Start/End: Original strand, 26626848 - 26626890
Alignment:
Q  290 aaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||||||||||||||| ||||||| ||| |||||||||||    
T  26626848 aaagttaaattgttttcgtataagctagaagctgttttcataa 26626890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 354
Target Start/End: Original strand, 42457921 - 42457987
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataacctgtcttagaaaacgtatgaa 354  Q
    |||||||||||||||||| ||||||||| | || ||| ||||||| || ||||||| ||| ||||||    
T  42457921 ataaagttaaattgtttttgtttaagctcttagctgtattcataagctatcttagagaacatatgaa 42457987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 326
Target Start/End: Complemental strand, 43199890 - 43199852
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttt 326  Q
    |||||||||||||||||| || |||||||||||||||||    
T  43199890 ataaagttaaattgtttttgtataagctataagttgttt 43199852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 332
Target Start/End: Original strand, 40279173 - 40279214
Alignment:
Q  291 aagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||||||||||| || |||| ||||||||||||||||||    
T  40279173 aagttaaattgttttggtataagatataagttgttttcataa 40279214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 41851508 - 41851549
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttca 329  Q
    |||||||||||||||||| || || |||||||||||||||||    
T  41851508 ataaagttaaattgtttttgtatatgctataagttgttttca 41851549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 6167380 - 6167336
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||| |||||| |||||||||||||||||| |||||| ||||    
T  6167380 ataaagtgaaattgctttcgtttaagctataagctgtttttataa 6167336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 10494641 - 10494685
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||| |||||||||| ||||| | ||||||||||||||||||    
T  10494641 ataaagtgaaattgtttttgtttatggtataagttgttttcataa 10494685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 33942123 - 33942167
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||| ||| ||||||| | |||||||||||||||||||||||    
T  33942123 ataaagtcaaactgttttcatgtaagctataagttgttttcataa 33942167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 25885832 - 25885876
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  25885832 ataaagttaaattgttttcgtgtaagctataagttgttttcataa 25885876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 288 - 354
Target Start/End: Complemental strand, 27043927 - 27043861
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataacctgtcttagaaaacgtatgaa 354  Q
    ||||||||||||||||||||| ||||||||||| |||||| |||| || |||| || ||||||||||    
T  27043927 ataaagttaaattgttttcgtataagctataagatgtttttataaactatcttggagaacgtatgaa 27043861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 6927590 - 6927546
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||||||||||||||| | ||| |||||||||||||||||||    
T  6927590 ataaagttaaattgttttcatgtaaactataagttgttttcataa 6927546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 343
Target Start/End: Complemental strand, 35571725 - 35571673
Alignment:
Q  291 aagttaaattgttttcgtttaagctataagttgttttcataacctgtcttaga 343  Q
    |||||| ||||||||||| ||||||||||| ||||||||||| || |||||||    
T  35571725 aagttatattgttttcgtataagctataagctgttttcataagctatcttaga 35571673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 47946174 - 47946214
Alignment:
Q  291 aagttaaattgttttcgtttaagctataagttgttttcata 331  Q
    |||||||||||||||||| |||||||||| |||||||||||    
T  47946174 aagttaaattgttttcgtataagctataaattgttttcata 47946214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 47119060 - 47119019
Alignment:
Q  290 aaagttaaattgttttcgtttaagctataagttgttttcata 331  Q
    ||||||||||||||||| | ||||||||||||||| ||||||    
T  47119060 aaagttaaattgttttcatataagctataagttgtattcata 47119019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 49219112 - 49219165
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataacctgtctta 341  Q
    ||||||| ||||| ||||| | ||||||||||||||||||||||| || |||||    
T  49219112 ataaagtcaaattattttcatataagctataagttgttttcataaactatctta 49219165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 17884041 - 17884085
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    |||||||||||||||||| || |||| ||| ||||||||||||||    
T  17884041 ataaagttaaattgtttttgtataagttatcagttgttttcataa 17884085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 320
Target Start/End: Complemental strand, 26520326 - 26520294
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataag 320  Q
    ||||||||||||||||||||| |||||||||||    
T  26520326 ataaagttaaattgttttcgtgtaagctataag 26520294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 52746937 - 52746893
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    |||||||||||||||||| || ||||| ||||| |||||||||||    
T  52746937 ataaagttaaattgtttttgtgtaagccataagctgttttcataa 52746893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 34770865 - 34770909
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||    
T  34770865 ataaagtcaaattgttttcatttaagctataagttgttttcataa 34770909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 332
Target Start/End: Original strand, 24558829 - 24558870
Alignment:
Q  291 aagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    |||||||||| ||||||| |||||||||||||||||||||||    
T  24558829 aagttaaattattttcgtataagctataagttgttttcataa 24558870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 778362 - 778406
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||||||||||||||| ||| ||||||||| |||||||||||    
T  778362 ataaagttaaattgttttcattttagctataagctgttttcataa 778406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 7918870 - 7918826
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||||||||| ||||| | |||||||||||||||||||||||    
T  7918870 ataaagttaaatttttttcttgtaagctataagttgttttcataa 7918826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 335
Target Start/End: Complemental strand, 16210983 - 16210936
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataacct 335  Q
    ||||||||| ||||||||| | |||||||||||||||||||| |||||    
T  16210983 ataaagttacattgttttcatataagctataagttgttttcaaaacct 16210936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 330
Target Start/End: Original strand, 773302 - 773344
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcat 330  Q
    ||||||||||||||||||| ||| ||||||||| |||||||||    
T  773302 ataaagttaaattgttttcattttagctataagctgttttcat 773344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 330
Target Start/End: Original strand, 787796 - 787838
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcat 330  Q
    ||||||||||||||||||| ||| ||||||||| |||||||||    
T  787796 ataaagttaaattgttttcattttagctataagctgttttcat 787838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 330
Target Start/End: Original strand, 2093252 - 2093294
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcat 330  Q
    ||||||| |||| |||||| |||||||||||||||||||||||    
T  2093252 ataaagtcaaatggttttcttttaagctataagttgttttcat 2093294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 353
Target Start/End: Complemental strand, 2595094 - 2595029
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataacctgtcttagaaaacgtatga 353  Q
    |||||||||||||||||||||   ||| ||||||||||||||||| |||  ||||| ||| |||||    
T  2595094 ataaagttaaattgttttcgtactagccataagttgttttcataagctgcattagacaacttatga 2595029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 447408 - 447364
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||||| ||||||||| |||||  ||||||||||||||||||    
T  447408 ataaagttacattgttttcatttaaaatataagttgttttcataa 447364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 7645959 - 7645995
Alignment:
Q  296 aaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||||||| | |||||||||||||||||||||||    
T  7645959 aaattgttttcatgtaagctataagttgttttcataa 7645995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 9834878 - 9834842
Alignment:
Q  296 aaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||||||| | |||||||||||||||||||||||    
T  9834878 aaattgttttcatataagctataagttgttttcataa 9834842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 42597374 - 42597418
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||| ||||||||||| |  ||||||||||||||||||||||    
T  42597374 ataaagtaaaattgttttcatgcaagctataagttgttttcataa 42597418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 354
Target Start/End: Original strand, 12425544 - 12425610
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataacctgtcttagaaaacgtatgaa 354  Q
    ||||||||||||||||||||| ||||||||||| |||||||| || || |||| || ||| ||||||    
T  12425544 ataaagttaaattgttttcgtataagctataagctgttttcacaagctatcttggagaacttatgaa 12425610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 332
Target Start/End: Complemental strand, 10272525 - 10272484
Alignment:
Q  291 aagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    |||| ||||||||||||| |||||||||||||||||||||||    
T  10272525 aagtcaaattgttttcgtataagctataagttgttttcataa 10272484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 332
Target Start/End: Original strand, 42646891 - 42646932
Alignment:
Q  291 aagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||||||||||| |||||||||||||| |||||||||||    
T  42646891 aagttaaattgtttttgtttaagctataaggtgttttcataa 42646932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 6587204 - 6587160
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||| || |||||||||||| |||||||||||||||||||||||    
T  6587204 ataaacttcaattgttttcgtataagctataagttgttttcataa 6587160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 332
Target Start/End: Original strand, 2568632 - 2568675
Alignment:
Q  290 aaagttaaattgtttt-cgtttaagctataagttgttttcataa 332  Q
    |||||||||||||||| ||| |||||||||||||||||||||||    
T  2568632 aaagttaaattgtttttcgtataagctataagttgttttcataa 2568675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 354
Target Start/End: Original strand, 39105440 - 39105503
Alignment:
Q  291 aagttaaattgttttcgtttaagctataagttgttttcataacctgtcttagaaaacgtatgaa 354  Q
    |||||||||||||||||| ||||||||||  ||||||||||| || |||| || ||| ||||||    
T  39105440 aagttaaattgttttcgtataagctataatctgttttcataagctatcttggagaacttatgaa 39105503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 332
Target Start/End: Original strand, 37914732 - 37914770
Alignment:
Q  294 ttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  37914732 ttaaattgttttcgtataagctataaattgttttcataa 37914770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 330
Target Start/End: Original strand, 40452264 - 40452306
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcat 330  Q
    ||||||||||||| |||| |||||||||||||| |||||||||    
T  40452264 ataaagttaaattattttggtttaagctataagctgttttcat 40452306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 12554494 - 12554539
Alignment:
Q  290 aaagttaaattgttttcgtttaagctataagttgttttcataacct 335  Q
    |||||||||||||||| || || ||||||||||||||| |||||||    
T  12554494 aaagttaaattgtttttgtatatgctataagttgtttttataacct 12554539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 332
Target Start/End: Original strand, 42569730 - 42569775
Alignment:
Q  287 cataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    |||||||| ||||||||||||| ||||||||||| ||| |||||||    
T  42569730 cataaagtgaaattgttttcgtctaagctataagctgtcttcataa 42569775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 1619063 - 1619107
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||||||||| ||| ||| ||||||||||| |||||||||||    
T  1619063 ataaagttaaattctttccgtataagctataagctgttttcataa 1619107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 4855671 - 4855715
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    |||||||||||||||| || | |||| ||||||||||||||||||    
T  4855671 ataaagttaaattgttatcatataagttataagttgttttcataa 4855715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 5559704 - 5559740
Alignment:
Q  294 ttaaattgttttcgtttaagctataagttgttttcat 330  Q
    |||||||||||| || |||||||||||||||||||||    
T  5559704 ttaaattgttttagtataagctataagttgttttcat 5559740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 9202845 - 9202801
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||||||||||||||| | ||||| ||||| |||||||||||    
T  9202845 ataaagttaaattgttttcatataagcaataagctgttttcataa 9202801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 351
Target Start/End: Complemental strand, 15402903 - 15402863
Alignment:
Q  311 aagctataagttgttttcataacctgtcttagaaaacgtat 351  Q
    ||||||||||||||||||||||||| | ||||| |||||||    
T  15402903 aagctataagttgttttcataacctattttagagaacgtat 15402863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 42583122 - 42583166
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||||||||||||||||| ||||  ||||| |||||||||||    
T  42583122 ataaagttaaattgttttcgtgtaagggataagctgttttcataa 42583166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 354
Target Start/End: Original strand, 21367640 - 21367706
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataacctgtcttagaaaacgtatgaa 354  Q
    ||||||||||||||||||||| |||  |||||||||||||||||| || |||| || ||| ||||||    
T  21367640 ataaagttaaattgttttcgtataatgtataagttgttttcataagctatcttggagaacttatgaa 21367706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 14145885 - 14145929
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||||||||||||||||| || |||||||||| |||||||||    
T  14145885 ataaagttaaattgttttcgtatatgctataagttattttcataa 14145929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 330
Target Start/End: Original strand, 35450563 - 35450605
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcat 330  Q
    ||||||| ||||||||||| | |||||||||||||||||||||    
T  35450563 ataaagtaaaattgttttcttataagctataagttgttttcat 35450605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 330
Target Start/End: Original strand, 48397619 - 48397661
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcat 330  Q
    ||||||| ||||||||||  |||||||||||||||||||||||    
T  48397619 ataaagtcaaattgtttttatttaagctataagttgttttcat 48397661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 30956723 - 30956682
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttca 329  Q
    |||||||||||||||||| || || |||||||||||||||||    
T  30956723 ataaagttaaattgtttttgtataggctataagttgttttca 30956682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 30972535 - 30972494
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttca 329  Q
    |||||||||||||||||| || || |||||||||||||||||    
T  30972535 ataaagttaaattgtttttgtataggctataagttgttttca 30972494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 10101573 - 10101529
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||||||||||||||| | |||| || |||||||||||||||    
T  10101573 ataaagttaaattgttttcatataagataaaagttgttttcataa 10101529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 10212498 - 10212454
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||||||||||||||| | |||| || |||||||||||||||    
T  10212498 ataaagttaaattgttttcatataagataaaagttgttttcataa 10212454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 343
Target Start/End: Original strand, 20669595 - 20669647
Alignment:
Q  291 aagttaaattgttttcgtttaagctataagttgttttcataacctgtcttaga 343  Q
    |||||||||||||||| | |||||||||| | |||||||||| || |||||||    
T  20669595 aagttaaattgttttcatataagctataattcgttttcataaactatcttaga 20669647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 354
Target Start/End: Complemental strand, 28622094 - 28622030
Alignment:
Q  290 aaagttaaattgttttcgtttaagctataagttgttttcataacctgtcttagaaaacgtatgaa 354  Q
    |||||||| ||||||| || ||||||||||| ||||||||||| || |||| || ||| ||||||    
T  28622094 aaagttaagttgtttttgtgtaagctataagctgttttcataaactatcttcgagaacttatgaa 28622030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 33405264 - 33405220
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    |||||||||| |||||||| | ||||||||||| |||||||||||    
T  33405264 ataaagttaatttgttttcatataagctataagctgttttcataa 33405220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 41057011 - 41057055
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||| |||| |||||||| | |||||||||||||||||||||||    
T  41057011 ataaaattaatttgttttcatataagctataagttgttttcataa 41057055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 289 - 326
Target Start/End: Complemental strand, 11851 - 11814
Alignment:
Q  289 taaagttaaattgttttcgtttaagctataagttgttt 326  Q
    |||||||||||||||||||| |||||||||||||||||    
T  11851 taaagttaaattgttttcgtataagctataagttgttt 11814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 295 - 372
Target Start/End: Complemental strand, 18350797 - 18350720
Alignment:
Q  295 taaattgttttcgtttaagctataagttgttttcataacctgtcttagaaaacgtatgaacatgttttaagctgtttt 372  Q
    |||||||||||||| |||| |||||| ||||||||||| || || | || | | ||||||||||||||||||| ||||    
T  18350797 taaattgttttcgtataagttataagctgttttcataagctatcatggagagcttatgaacatgttttaagctatttt 18350720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 354
Target Start/End: Complemental strand, 20881730 - 20881667
Alignment:
Q  291 aagttaaattgttttcgtttaagctataagttgttttcataacctgtcttagaaaacgtatgaa 354  Q
    |||||||||||||| |||  |||||||||||||||||||||| || ||||| | ||| ||||||    
T  20881730 aagttaaattgtttccgtacaagctataagttgttttcataaactatcttaaagaacttatgaa 20881667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 327
Target Start/End: Original strand, 30180024 - 30180063
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgtttt 327  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  30180024 ataaagttaaattgttttcgtataagctataagctgtttt 30180063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 338
Target Start/End: Original strand, 30496677 - 30496727
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataacctgtc 338  Q
    ||||||| ||||||||||||| ||| ||||| ||||||||||||| |||||    
T  30496677 ataaagtcaaattgttttcgtataacctataggttgttttcataaactgtc 30496727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 1417237 - 1417281
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||| ||||||||||| | ||||| |||||||||||||||||    
T  1417237 ataaagtcaaattgttttcatataagcaataagttgttttcataa 1417281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 12110333 - 12110377
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||| |||||||||| || ||||||||||| |||||||||||    
T  12110333 ataaagtcaaattgttttggtataagctataagctgttttcataa 12110377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 27548236 - 27548280
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    |||||||  |||||||||| ||||||||||||| |||||||||||    
T  27548236 ataaagtctaattgttttcatttaagctataagctgttttcataa 27548280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 34083622 - 34083578
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    |||||||||||||||||  || ||||||||||| |||||||||||    
T  34083622 ataaagttaaattgtttgtgtataagctataagctgttttcataa 34083578  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 39967893 - 39967937
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||| |||||||||||||||   |||||||||||||||||||||    
T  39967893 ataaacttaaattgttttcgtactagctataagttgttttcataa 39967937  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 27549 - 27593
Alignment:
Q  288 ataaagttaaattgttttcgtttaagctataagttgttttcataa 332  Q
    ||||||| ||||||||||| | ||| |||||||||||||||||||    
T  27549 ataaagtcaaattgttttcatataaactataagttgttttcataa 27593  T

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