View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1365_low_12 (Length: 491)
Name: NF1365_low_12
Description: NF1365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1365_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Complemental strand, 53295733 - 53295253
Alignment:
| Q |
1 |
gccgaatttccctgaatggcccatcgagttagcccgaaataaagaaatccaatttcaagtttccatcgcgacaaaaccctaatttccaatttgtaaaacg |
100 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53295733 |
gccgaatttccctgaatggctcattgagttagcccgaaataaagaaatccaatttcaagtttccatcgcgacaaaaccctaatttccaatttgtaaaacg |
53295634 |
T |
|
| Q |
101 |
aaaaccctaattttcacttcaagctgaaacagagaggagaaagcagcgaccgtttcagcgtcttcgttttcgaaccgttctacaatggccgtaagtatct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
53295633 |
aaaaccctaattttcacttcaagctgaaacagagaggagaaagcatccaccgtttcagcgtcttcgttttcgaaccgttctacaatggccgtaagcatct |
53295534 |
T |
|
| Q |
201 |
ttttccctccgattagcatctttttccctccgatttgcatcttttatacattcaattagcttattatccaattttctcattgatttgtgtattgaaattt |
300 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53295533 |
ttttacctccgattagcatctttttccctccgattaacatcttttatacattcaattagcttattatccaattttctcattgatttgtgtattgaaattt |
53295434 |
T |
|
| Q |
301 |
ctaacaatatgatttaatgtgaattatttttctaattcatgttttgcagactattcctgttaatcccaagccttttttgaacaatttgactggaaagcct |
400 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53295433 |
ctaacaatgtgatttaatgtgaattatttttctaattcatgttttgcagactattcctgttaatcccaagccttttttgaacaatttgactggaaagcct |
53295334 |
T |
|
| Q |
401 |
gttattgtgaaactcaaatggggaatggagtacaaaggtaaatcctttattattatgttgctaa-tttctacatgtttcat |
480 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
53295333 |
gttattgtgaaactcaaatggggaatggagtacaaaggtaaatcctttattattatgttgctaattttcttcatgtttcat |
53295253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 436
Target Start/End: Original strand, 47349716 - 47349778
Alignment:
| Q |
374 |
tttttgaacaatttgactggaaagcctgttattgtgaaactcaaatggggaatggagtacaaa |
436 |
Q |
| |
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||||||||||| ||||| || ||||||||| |||||||||| ||||||| ||||| ||||||| |
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| T |
47349716 |
tttttgaacaaattgaccgggaagcctgttcttgtgaaactaaaatgggaaatggggtacaaa |
47349778 |
T |
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