View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1365_low_14 (Length: 478)

Name: NF1365_low_14
Description: NF1365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1365_low_14
NF1365_low_14
[»] chr2 (16 HSPs)
chr2 (202-468)||(44623928-44624196)
chr2 (101-287)||(44614858-44615047)
chr2 (348-472)||(44614733-44614857)
chr2 (6-78)||(16124634-16124706)
chr2 (6-78)||(16334960-16335032)
chr2 (282-367)||(39137894-39137979)
chr2 (286-387)||(39152579-39152680)
chr2 (286-387)||(39459256-39459357)
chr2 (307-369)||(39161864-39161926)
chr2 (307-369)||(39207268-39207330)
chr2 (307-385)||(39389096-39389174)
chr2 (286-388)||(39397787-39397889)
chr2 (286-390)||(39370109-39370213)
chr2 (205-248)||(39414622-39414665)
chr2 (235-286)||(39421698-39421749)
chr2 (338-387)||(39468343-39468392)
[»] chr8 (2 HSPs)
chr8 (235-392)||(45342049-45342206)
chr8 (202-243)||(45342230-45342271)
[»] chr6 (1 HSPs)
chr6 (307-387)||(16113303-16113383)
[»] chr3 (3 HSPs)
chr3 (6-71)||(36017112-36017177)
chr3 (6-71)||(36034018-36034083)
chr3 (6-78)||(36025203-36025275)
[»] chr7 (2 HSPs)
chr7 (205-237)||(19808027-19808059)
chr7 (282-360)||(19807851-19807929)
[»] chr5 (2 HSPs)
chr5 (205-243)||(17059656-17059694)
chr5 (237-278)||(17059589-17059630)
[»] chr4 (1 HSPs)
chr4 (6-74)||(12894918-12894986)


Alignment Details
Target: chr2 (Bit Score: 182; Significance: 3e-98; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 202 - 468
Target Start/End: Complemental strand, 44624196 - 44623928
Alignment:
Q  202 aatatgtagatcaggttattaaaaatatcaacatcaataaaata--gatgaatagcaacatttaccaaattctttttcctcatcaaattgtttctctgtc 299  Q
    ||||| |||||| ||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||| ||||||  |||||||||||||    
T  44624196 aatatatagatctggttattaaaaatatcaacatcaataaaagaaagatgaatagcaacatttaccaaattctttttcttcatcatgttgtttctctgtc 44624097  T
Q  300 agatcaagctcctttagttgtccaccaaaattattcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaactcgagtgctttga 399  Q
    |  |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44624096 aactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatttgtacttcaatctgattctcttttaattcgagtgctttga 44623997  T
Q  400 cagatttgagattgtcctcagtttggttttcaatttgctgcatttttccttcaaattcctctacctttg 468  Q
    ||||||||||||||||||||  ||| ||||||| ||||||||||||| |||| |||| |||| ||||||    
T  44623996 cagatttgagattgtcctcaacttgattttcaaattgctgcatttttacttcgaatttctcttcctttg 44623928  T

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Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 101 - 287
Target Start/End: Complemental strand, 44615047 - 44614858
Alignment:
Q  101 atattatatccaaaactccaaataggattattatgtgtgtgatatagaatagttgaatagcaagtactgcattaacatcattaaattattannnnnnnnn 200  Q
    |||||||| |||||||| ||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||             
T  44615047 atattatagccaaaactacaaataggactattatttgtgtgatatagaatagttgaattgcaagtactgcattaacatcattaaattattatttattttt 44614948  T
Q  201 ---aaatatgtagatcaggttattaaaaatatcaacatcaataaaatagatgaatagcaacatttaccaaattctttttcctcatcaaat 287  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614947 tttaaatatgtagatcaggttattaaaaatatcaacatcaataaaatagatgaatagcaacatttaccaaattctttttcctcatcaaat 44614858  T

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Target: chr2; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 348 - 472
Target Start/End: Complemental strand, 44614857 - 44614733
Alignment:
Q  348 agatccttgatttgtacttcaatctgattctcttttaactcgagtgctttgacagatttgagattgtcctcagtttggttttcaatttgctgcatttttc 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614857 agatccttgatttgtacttcaatctgattctcttttaactcgagtgctttgacagatttgagattgtcctcagtttggttttcaatttgctgcatttttc 44614758  T
Q  448 cttcaaattcctctacctttgtttc 472  Q
    |||||||||||||||||||||||||    
T  44614757 cttcaaattcctctacctttgtttc 44614733  T

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Target: chr2; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 16124706 - 16124634
Alignment:
Q  6 aagatgctctcaccgaagtctccaatttatctgggtgggactctaaaaattcaaggtaaataaaatgaattat 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16124706 aagatgctctcaccgaagtctccaatttatctgggtgggactctaaaagttcaaggtaaataaaatgaattat 16124634  T

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Target: chr2; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 16334960 - 16335032
Alignment:
Q  6 aagatgctctcaccgaagtctccaatttatctgggtgggactctaaaaattcaaggtaaataaaatgaattat 78  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16334960 aagatgctctcaccgaagtctccaaattatctgggtgggactctaaaaattcaaggtaaataaaatgaattat 16335032  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 282 - 367
Target Start/End: Complemental strand, 39137979 - 39137894
Alignment:
Q  282 tcaaattgtttctctgtcagatcaagctcctttagttgtccaccaaaattattcagctttgactcaagatccttgatttgtacttc 367  Q
    |||||||||||||||||||| ||| ||||||| | ||||||| |||| |||| |||||||||  || |||||||||| ||| ||||    
T  39137979 tcaaattgtttctctgtcagttcaggctccttcaattgtccatcaaatttatccagctttgaaccaggatccttgatctgtccttc 39137894  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 387
Target Start/End: Complemental strand, 39152680 - 39152579
Alignment:
Q  286 attgtttctctgtcagatcaagctcctttagttgtccaccaaaattattcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaa 385  Q
    ||||||||||||||| |||| |||||||    |||||| ||   ||||| |||||||||||||||||||||  || |||||||| ||| |||||||||||    
T  39152680 attgtttctctgtcaaatcatgctccttcgactgtccatcatgtttatttagctttgactcaagatccttggcttctacttcaagctgcttctcttttaa 39152581  T
Q  386 ct 387  Q
    ||    
T  39152580 ct 39152579  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 387
Target Start/End: Complemental strand, 39459357 - 39459256
Alignment:
Q  286 attgtttctctgtcagatcaagctcctttagttgtccaccaaaattattcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaa 385  Q
    |||||||| ||||||  ||| ||||||| | ||||||| |||||||||| |||||||||||  ||||||||| |||| ||||||  || || ||||||||    
T  39459357 attgtttcactgtcaactcaggctccttcacttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaa 39459258  T
Q  386 ct 387  Q
    ||    
T  39459257 ct 39459256  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 369
Target Start/End: Complemental strand, 39161926 - 39161864
Alignment:
Q  307 gctcctttagttgtccaccaaaattattcagctttgactcaagatccttgatttgtacttcaa 369  Q
    ||||||||||||||||| |||| ||||||| |||||||| | ||||||||| |||| ||||||    
T  39161926 gctcctttagttgtccatcaaatttattcatctttgacttaggatccttgacttgtccttcaa 39161864  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 369
Target Start/End: Original strand, 39207268 - 39207330
Alignment:
Q  307 gctcctttagttgtccaccaaaattattcagctttgactcaagatccttgatttgtacttcaa 369  Q
    ||||||||||||||||| |||| ||||||| |||||||| | ||||||||| |||| ||||||    
T  39207268 gctcctttagttgtccatcaaatttattcatctttgacttaggatccttgacttgtccttcaa 39207330  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 385
Target Start/End: Original strand, 39389096 - 39389174
Alignment:
Q  307 gctcctttagttgtccaccaaaattattcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaa 385  Q
    ||||||||| ||||||| |||| |||||||||||||||||| |||| |||| |||  |||||| ||| || ||||||||    
T  39389096 gctcctttatttgtccatcaaatttattcagctttgactcaggatcgttgacttgcccttcaaactgcttttcttttaa 39389174  T

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Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 388
Target Start/End: Original strand, 39397787 - 39397889
Alignment:
Q  286 attgtttctctgtcagatcaagctcctttagttgtccaccaaaattattcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaa 385  Q
    |||||||| ||||||  ||| ||||||| ||||||||| |||| |||| |||| |||||||||| ||||||| | |  || ||| ||| |||||||||||    
T  39397787 attgtttccctgtcaactcaggctccttcagttgtccatcaaatttatccagccttgactcaagttccttgactcgacctgcaacctgcttctcttttaa 39397886  T
Q  386 ctc 388  Q
    |||    
T  39397887 ctc 39397889  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 390
Target Start/End: Complemental strand, 39370213 - 39370109
Alignment:
Q  286 attgtttctctgtcagatcaagctcctttagttgtccaccaaaattattcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaa 385  Q
    ||||||||| ||||   ||| ||| ||||||||||||| | || ||||||| ||||||||||||| |||||| ||||  | ||| ||| |||||||||||    
T  39370213 attgtttctttgtcgactcaggcttctttagttgtccatccaatttattcatctttgactcaagacccttgacttgtcttccaaactgcttctcttttaa 39370114  T
Q  386 ctcga 390  Q
     ||||    
T  39370113 ttcga 39370109  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 248
Target Start/End: Original strand, 39414622 - 39414665
Alignment:
Q  205 atgtagatcaggttattaaaaatatcaacatcaataaaatagat 248  Q
    ||||||||||| ||||||||||||||||||||| |||| |||||    
T  39414622 atgtagatcagattattaaaaatatcaacatcattaaactagat 39414665  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 39421698 - 39421749
Alignment:
Q  235 tcaataaaatagatgaatagcaacatttaccaaattctttttcctcatcaaa 286  Q
    |||||||| ||||||||||  ||||||||||| |||| ||||||||||||||    
T  39421698 tcaataaattagatgaataagaacatttaccagattcattttcctcatcaaa 39421749  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 387
Target Start/End: Complemental strand, 39468392 - 39468343
Alignment:
Q  338 ctttgactcaagatccttgatttgtacttcaatctgattctcttttaact 387  Q
    |||||||| ||| ||||||| |||| |||||||||| |||||||||||||    
T  39468392 ctttgactgaagttccttgacttgtccttcaatctgcttctcttttaact 39468343  T

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Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 235 - 392
Target Start/End: Complemental strand, 45342206 - 45342049
Alignment:
Q  235 tcaataaaatagatgaatagcaacatttaccaaattctttttcctcatcaaattgtttctctgtcagatcaagctcctttagttgtccaccaaaattatt 334  Q
    |||||||| |||||||||| |||  ||||||||||||||||||||||||  ||||||||| |||||  ||||||||||||| ||||||| | ||||||||    
T  45342206 tcaataaactagatgaataacaaattttaccaaattctttttcctcatcgtattgtttctttgtcaactcaagctcctttatttgtccatccaaattatt 45342107  T
Q  335 cagctttgactcaagatccttgatttgtacttcaatctgattctcttttaactcgagt 392  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||||||||||||| ||||    
T  45342106 cagctttgactcaaggtccttgatttgcacttcaaactgattctcttttaactggagt 45342049  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 45342271 - 45342230
Alignment:
Q  202 aatatgtagatcaggttattaaaaatatcaacatcaataaaa 243  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  45342271 aatatgtagatcaggttattaaaaatatcaacatcaacaaaa 45342230  T

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Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 307 - 387
Target Start/End: Complemental strand, 16113383 - 16113303
Alignment:
Q  307 gctcctttagttgtccaccaaaattattcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaact 387  Q
    ||||||| |||||||| ||||| |  ||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||    
T  16113383 gctccttcagttgtccgccaaattcgttcagctttgactcaagctccttgacttgtacttcaatctgcttctcttttaact 16113303  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 36017177 - 36017112
Alignment:
Q  6 aagatgctctcaccgaagtctccaatttatctgggtgggactctaaaaattcaaggtaaataaaat 71  Q
    ||||||||||||| ||||   ||| ||||||||||||| ||| | |||||||||||||||||||||    
T  36017177 aagatgctctcactgaagcagccactttatctgggtggcactatcaaaattcaaggtaaataaaat 36017112  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 36034083 - 36034018
Alignment:
Q  6 aagatgctctcaccgaagtctccaatttatctgggtgggactctaaaaattcaaggtaaataaaat 71  Q
    ||||||||||||| ||||   ||| ||||||||||||| ||| | |||||||||||||||||||||    
T  36034083 aagatgctctcactgaagcagccactttatctgggtggcactatcaaaattcaaggtaaataaaat 36034018  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 36025275 - 36025203
Alignment:
Q  6 aagatgctctcaccgaagtctccaatttatctgggtgggactctaaaaattcaaggtaaataaaatgaattat 78  Q
    ||||||||||||||||||   |||||||| |||||||| ||||| ||||||  | ||||||||||| ||||||    
T  36025275 aagatgctctcaccgaagctgccaatttagctgggtggtactctcaaaattacaagtaaataaaataaattat 36025203  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 19808059 - 19808027
Alignment:
Q  205 atgtagatcaggttattaaaaatatcaacatca 237  Q
    |||||||||||||||||||||||||||||||||    
T  19808059 atgtagatcaggttattaaaaatatcaacatca 19808027  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 360
Target Start/End: Complemental strand, 19807929 - 19807851
Alignment:
Q  282 tcaaattgtttctctgtcagatcaagctcctttagttgtccaccaaaattattcagctttgactcaagatccttgattt 360  Q
    |||||||||||||||||||  |||  |||||| | ||||||| |||| |||| |||||||||  || ||||||||||||    
T  19807929 tcaaattgtttctctgtcaactcagactccttcaattgtccatcaaatttatccagctttgaaccaggatccttgattt 19807851  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 17059694 - 17059656
Alignment:
Q  205 atgtagatcaggttattaaaaatatcaacatcaataaaa 243  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  17059694 atgtagatcaggatattaaaaatagcaacatcaataaaa 17059656  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 17059630 - 17059589
Alignment:
Q  237 aataaaatagatgaatagcaacatttaccaaattctttttcc 278  Q
    |||||| |||||||||| ||||||||||||||||| ||||||    
T  17059630 aataaactagatgaataacaacatttaccaaattcattttcc 17059589  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 12894918 - 12894986
Alignment:
Q  6 aagatgctctcaccgaagtctccaatttatctgggtgggactctaaaaattcaaggtaaataaaatgaa 74  Q
    ||||||||||||  ||||   |||||||| |||||||| ||||| ||||||  ||||||||||||||||    
T  12894918 aagatgctctcattgaagcagccaatttagctgggtggcactctcaaaattacaggtaaataaaatgaa 12894986  T

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