View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1365_low_15 (Length: 460)
Name: NF1365_low_15
Description: NF1365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1365_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 11 - 431
Target Start/End: Complemental strand, 34435840 - 34435430
Alignment:
| Q |
11 |
cacagacacacgcaccagacacaagctgacacataactactaataataattttgaaaaaa--gacgtaattaaaggcaaccacatatgtcggatccggat |
108 |
Q |
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| T |
34435840 |
cacagacacacgcaccagacacaagctgacacataactactaataataattttgaaaaaatagacgtaattaaaggcaaccacatatgtcagatccggat |
34435741 |
T |
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| Q |
109 |
tgtaaataggttgtccaatcaagatcagacagtctacattacaagctaagtattttagatctnnnnnnnccaaaatcctctttaaaatctggactgttct |
208 |
Q |
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| T |
34435740 |
tgtaaataggttgtccaatcaagatcagacagtctagattacaagctaagtattttagatctaa-------aaaaacc-----aaaatctggactgttct |
34435653 |
T |
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| Q |
209 |
atctttattgacagctgatatgcctgtgcagtcacactgcacccaatccaaatgtgtgagtgttaagacaccggcaaatgtcggacacaaaacatgtgtt |
308 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34435652 |
atctttattgacagctgatatgcctgtgcaatcacactgcaaccaatccaaatgtgtgagtgttaagacaccggcaaatgtcggacacaaaacatgtgtt |
34435553 |
T |
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| Q |
309 |
ccatctgatgatggtgatgtattaatacattttttggcactaacttatataatccatatgattttataattccagccctatcatgatgagtgctggagag |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34435552 |
ccatctgatgatggtgatgtattaatacattttttggcactaacttatataatccatatgattttataattccagccctatcatgatgagtgctggagag |
34435453 |
T |
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| Q |
409 |
ctagaaagtggaaatgcgggaga |
431 |
Q |
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| T |
34435452 |
ctagaaagtggaaatgcgggaga |
34435430 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 381 - 431
Target Start/End: Complemental strand, 30666118 - 30666068
Alignment:
| Q |
381 |
cagccctatcatgatgagtgctggagagctagaaagtggaaatgcgggaga |
431 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
30666118 |
cagccccatcatgatgagtgctggagagcttgaaagtggaaatgcaggaga |
30666068 |
T |
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