View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1365_low_20 (Length: 398)
Name: NF1365_low_20
Description: NF1365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1365_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 30 - 386
Target Start/End: Original strand, 38220172 - 38220527
Alignment:
| Q |
30 |
tgtggtgcatgattcaacttgatactcaacctgaaacaattaaaatccatattgctttactatataatacccaacactggattagtgttacatttcagag |
129 |
Q |
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| T |
38220172 |
tgtggtgcatgattcaacttgatactcaacctgaaacaaagaaa-tccatattgctttactatataatacccaacattggattagtgttacatttcagag |
38220270 |
T |
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| Q |
130 |
ttaaatcgagattgagacaaacaaactacaaatttggattccttgcaatctcgagactctacattcacgcaatcgacatagactgttggttcaagatcgg |
229 |
Q |
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| T |
38220271 |
ttaaatcgagattgagacaaacaaactacaaatttggattccttgcaatctcgagactctacattcacgcaatcgacatagactgttggttcaagatcgg |
38220370 |
T |
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| Q |
230 |
acggtcctagatttcaagctaggtattttggatgttaatnnnnnnnnnnnnnntcaaaatttgtatattttgtgaaccgactgatcttgatctaactttt |
329 |
Q |
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| T |
38220371 |
acggtcctagatttcaatctaggtattttggattttaataaaaaaaaaaaaaatcaaaatttgtatattttgtgaactgactgatcttgatctaacattt |
38220470 |
T |
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| Q |
330 |
attgtgcatcgactgcgtgtttcttgatgaatttgtttacctttcaatcatgttctg |
386 |
Q |
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| T |
38220471 |
attgtgcatcgactgcgtgtttcttgatgaatttgtttaccttgcaatcatgttctg |
38220527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 30 - 381
Target Start/End: Original strand, 38243027 - 38243370
Alignment:
| Q |
30 |
tgtggtgcatgattcaacttgatactcaacctgaaacaattaaaatccatattgctttactatataatacccaacactggattagtgttacatttcagag |
129 |
Q |
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| T |
38243027 |
tgtgctgcaagattcaacttgatactcaatctgaaacaaagaaa-tccatgttgct---cactatgatacccaacaatgggctagtgttacatttaagag |
38243122 |
T |
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| Q |
130 |
ttaaatcgagattgagacaaacaaactacaaatttggattccttgcaatctcgagactctacattcacgcaatcgacatagactgttggttc-aagatcg |
228 |
Q |
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| T |
38243123 |
ttaaatcgagattgagacaaataaattactaatttggattcctagcagccgagagactctacattcacgcaatcagcacagactgttggaccaaagatca |
38243222 |
T |
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| Q |
229 |
gacggtcctagatttcaagctaggtattttggatgttaatnnnnnnnnnnnnnntcaaaatttgtatattttgtgaaccgactgatcttgatctaacttt |
328 |
Q |
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| T |
38243223 |
gaaggtcctagatttcaagctcggtattttggattttaat------caaaataatcaatattcgtatattttgtgaactgactggtcttgatccaacatt |
38243316 |
T |
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| Q |
329 |
tattg-tgcatcgactgcgtgtttcttgatgaatttgtttacctttcaatcatg |
381 |
Q |
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| T |
38243317 |
cattgatgcattgactgtgtgtttcttgatgaattcatttaccttgcaatcatg |
38243370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 38214134 - 38214187
Alignment:
| Q |
30 |
tgtggtgcatgattcaacttgatactcaacctgaaacaattaaaatccatattgct |
85 |
Q |
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|||||| || ||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
38214134 |
tgtggtacaagattcaacttgatactcaacctgaaacaa--aaaatccatgttgct |
38214187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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