View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1365_low_21 (Length: 367)
Name: NF1365_low_21
Description: NF1365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1365_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 8 - 289
Target Start/End: Original strand, 52179718 - 52179999
Alignment:
| Q |
8 |
ccaagaatattacacaatgtcacaaacacattcaatgctcgagtttacaaaggagaatcttaactattggctactagatcacccatcaattgtttcattc |
107 |
Q |
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| T |
52179718 |
ccaagaaaattacacaatgtcacaaacatattcaatgctcgagtttacaaaggagaatcttaactattggctactagatcacccatcaattgtttcattc |
52179817 |
T |
|
| Q |
108 |
cggtggagtcctgccctatcatggggagccacatggtggtttctcatctccgccatattcttttacatctccatcacggtaactatccacgtcatcctta |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52179818 |
cggtggagtcctgccctatcatggggagccacatggtggtttctcatctccgccatattcttttacatctccatcacggtaactatccacgtcatcctta |
52179917 |
T |
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| Q |
208 |
aactatgtcggagactgcgccctgtacctttaggtccattcccagcaattcataatctctccatgtcattgatctccctaac |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
52179918 |
aactatgtcggagactgcgccctgtacctttaggtccattaccagcaattcatagtctctccatgtcattaatctccctaac |
52179999 |
T |
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