View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1365_low_23 (Length: 346)

Name: NF1365_low_23
Description: NF1365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1365_low_23
NF1365_low_23
[»] chr2 (24 HSPs)
chr2 (141-346)||(16124443-16124650)
chr2 (12-140)||(2059620-2059748)
chr2 (13-140)||(42028578-42028705)
chr2 (15-140)||(13279974-13280099)
chr2 (12-140)||(31860221-31860349)
chr2 (31-140)||(16115046-16115155)
chr2 (13-140)||(7317772-7317899)
chr2 (71-143)||(31860076-31860148)
chr2 (63-140)||(42028765-42028842)
chr2 (67-140)||(36059278-36059351)
chr2 (48-140)||(31470587-31470678)
chr2 (49-140)||(38086140-38086231)
chr2 (63-141)||(16115231-16115309)
chr2 (63-140)||(2059490-2059567)
chr2 (63-140)||(7317635-7317712)
chr2 (58-140)||(15332844-15332926)
chr2 (82-140)||(13279840-13279898)
chr2 (68-140)||(38085967-38086038)
chr2 (74-139)||(3671822-3671886)
chr2 (49-140)||(3671996-3672087)
chr2 (74-140)||(31470776-31470841)
chr2 (141-197)||(16335109-16335168)
chr2 (315-346)||(16335016-16335047)
chr2 (83-140)||(15330449-15330505)
[»] chr5 (29 HSPs)
chr5 (12-140)||(26534634-26534762)
chr5 (12-141)||(791591-791720)
chr5 (12-140)||(130384-130512)
chr5 (13-138)||(8323844-8323970)
chr5 (17-137)||(42630848-42630968)
chr5 (48-140)||(5146675-5146767)
chr5 (63-141)||(26534505-26534583)
chr5 (48-140)||(228717-228809)
chr5 (48-140)||(33377820-33377912)
chr5 (49-140)||(8489123-8489214)
chr5 (49-140)||(19898927-19899018)
chr5 (63-140)||(130254-130331)
chr5 (63-140)||(8323707-8323784)
chr5 (48-140)||(13823320-13823412)
chr5 (49-140)||(6518203-6518294)
chr5 (63-141)||(42630710-42630788)
chr5 (49-122)||(40881992-40882065)
chr5 (72-140)||(14069861-14069928)
chr5 (49-137)||(35454623-35454710)
chr5 (49-140)||(40881792-40881881)
chr5 (71-137)||(19897228-19897293)
chr5 (83-140)||(791810-791867)
chr5 (72-140)||(5146504-5146571)
chr5 (77-140)||(6518404-6518466)
chr5 (71-140)||(14388515-14388583)
chr5 (71-140)||(35454451-35454519)
chr5 (56-140)||(13823150-13823233)
chr5 (52-115)||(27319643-27319706)
chr5 (82-137)||(228990-229044)
[»] chr1 (24 HSPs)
chr1 (12-140)||(26552128-26552256)
chr1 (13-140)||(10227712-10227839)
chr1 (12-131)||(19059514-19059633)
chr1 (63-136)||(19059378-19059451)
chr1 (48-140)||(50892963-50893055)
chr1 (49-140)||(28217692-28217783)
chr1 (49-140)||(23346419-23346510)
chr1 (63-138)||(26551992-26552067)
chr1 (48-139)||(39669230-39669321)
chr1 (49-140)||(48871410-48871501)
chr1 (74-140)||(10227910-10227976)
chr1 (48-140)||(41833874-41833966)
chr1 (71-140)||(7062192-7062260)
chr1 (49-109)||(7062038-7062098)
chr1 (71-140)||(48752589-48752657)
chr1 (71-139)||(50905107-50905175)
chr1 (71-146)||(42180565-42180639)
chr1 (74-140)||(48871247-48871312)
chr1 (74-140)||(50893161-50893226)
chr1 (71-140)||(28217530-28217598)
chr1 (53-139)||(50904992-50905080)
chr1 (75-132)||(23346620-23346676)
chr1 (71-140)||(41834071-41834139)
chr1 (48-109)||(42180744-42180805)
[»] chr3 (15 HSPs)
chr3 (12-140)||(33214443-33214571)
chr3 (15-140)||(27073047-27073172)
chr3 (12-141)||(36274119-36274247)
chr3 (63-140)||(33214626-33214703)
chr3 (48-140)||(36635410-36635502)
chr3 (63-138)||(10598810-10598885)
chr3 (49-140)||(19580483-19580574)
chr3 (63-140)||(33219072-33219149)
chr3 (63-140)||(36274312-36274389)
chr3 (82-141)||(10599004-10599063)
chr3 (82-140)||(27072913-27072971)
chr3 (13-69)||(33219209-33219265)
chr3 (49-140)||(11651000-11651091)
chr3 (72-137)||(36635241-36635305)
chr3 (13-68)||(10598945-10599001)
[»] chr4 (13 HSPs)
chr4 (13-140)||(40534100-40534227)
chr4 (13-140)||(3102677-3102804)
chr4 (13-121)||(9231717-9231825)
chr4 (63-140)||(3102540-3102617)
chr4 (63-139)||(13690216-13690292)
chr4 (63-140)||(9231580-9231657)
chr4 (63-140)||(40533963-40534040)
chr4 (49-140)||(18936850-18936941)
chr4 (49-140)||(37177799-37177890)
chr4 (71-140)||(11147014-11147083)
chr4 (55-140)||(18381488-18381573)
chr4 (74-140)||(5121005-5121071)
chr4 (60-140)||(18936676-18936755)
[»] chr8 (13 HSPs)
chr8 (13-140)||(37994845-37994972)
chr8 (48-140)||(397177-397269)
chr8 (49-140)||(41539770-41539861)
chr8 (48-140)||(2814416-2814508)
chr8 (36-122)||(25101748-25101834)
chr8 (63-140)||(37994708-37994785)
chr8 (63-140)||(44036814-44036891)
chr8 (13-80)||(44036951-44037018)
chr8 (60-140)||(14193509-14193588)
chr8 (68-140)||(41539963-41540034)
chr8 (63-140)||(2814243-2814319)
chr8 (49-140)||(14193324-14193414)
chr8 (63-140)||(397007-397083)
[»] chr6 (8 HSPs)
chr6 (12-139)||(33022304-33022431)
chr6 (63-140)||(33022164-33022241)
chr6 (48-140)||(21389021-21389113)
chr6 (48-139)||(7789842-7789933)
chr6 (71-137)||(21389217-21389282)
chr6 (50-139)||(28472535-28472624)
chr6 (58-129)||(7789678-7789748)
chr6 (50-139)||(29859723-29859813)
[»] scaffold0214 (2 HSPs)
scaffold0214 (13-136)||(11630-11754)
scaffold0214 (63-140)||(11814-11891)
[»] chr7 (10 HSPs)
chr7 (12-140)||(19805549-19805678)
chr7 (48-140)||(7298635-7298727)
chr7 (48-140)||(40521188-40521280)
chr7 (63-140)||(19804797-19804874)
chr7 (71-140)||(40521016-40521084)
chr7 (71-140)||(28949001-28949069)
chr7 (72-140)||(7298833-7298900)
chr7 (71-137)||(46567960-46568025)
chr7 (48-114)||(46568130-46568196)
chr7 (71-140)||(16979613-16979681)
[»] scaffold0135 (2 HSPs)
scaffold0135 (13-121)||(37583-37691)
scaffold0135 (63-140)||(37446-37523)
[»] scaffold0140 (1 HSPs)
scaffold0140 (72-140)||(15847-15915)


Alignment Details
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 141 - 346
Target Start/End: Original strand, 16124443 - 16124650
Alignment:
Q  141 gattaatgaactgctttgattcttcgaaatttaaatccatcgaatcaatccattttg-cccctcaacaataaaacatgtagtaaactagtacacagatac 239  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  16124443 gattaatgaactgttttgattcatcgaaatttaaatccatcgaatcaatccattttgtccccttaacaataaaacatgtagtaaactagtacacagatac 16124542  T
Q  240 cggggcttatgtttccatttatattccttcaatatgcacagttatttgtactatattacagacaactcgtgacatg-aataaattagatggataattcat 338  Q
    | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||    
T  16124543 cagggcttatgtttccatttatattccttcaatatgcatagttatttgtactatattagagacaagtcgtgacatgaaataaattagatggataattcat 16124642  T
Q  339 tttattta 346  Q
    ||||||||    
T  16124643 tttattta 16124650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 2059620 - 2059748
Alignment:
Q  12 agagagagagaaaggattagttgatttatattttgataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgatagg 111  Q
    ||||||||||||| || |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2059620 agagagagagaaatgactagttgatttatttttttataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttgtaaggatgatagg 2059719  T
Q  112 ttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||| | |||||||||||||||    
T  2059720 ttaggttcgttccaacacaataatttctc 2059748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 42028705 - 42028578
Alignment:
Q  13 gagagagagaaaggattagttgatttatattttgataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggt 112  Q
    ||||||||||||||| |||||||||||  |||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||    
T  42028705 gagagagagaaaggactagttgatttaattttttataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaagaatgataggt 42028606  T
Q  113 taggttcgtttctacacaataatttctc 140  Q
    |||||||||| |||||||| ||||||||    
T  42028605 taggttcgttcctacacaagaatttctc 42028578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 13279974 - 13280099
Alignment:
Q  15 gagagagaaaggattagttgatttatattttgataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggtta 114  Q
    ||||||||||||| | |||||||||| |||| ||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||    
T  13279974 gagagagaaaggacttgttgatttatttttttataattattttaaaagaaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggtta 13280073  T
Q  115 ggttcgtttctacacaataatttctc 140  Q
    |||||||| |||||||| ||||||||    
T  13280074 ggttcgttcctacacaagaatttctc 13280099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 31860221 - 31860349
Alignment:
Q  12 agagagagagaaaggattagttgatttatattttgataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgatagg 111  Q
    |||||||||||||||| ||||| |||||| |||| |||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||| ||||    
T  31860221 agagagagagaaaggactagttaatttatttttttataattattttaaaagaaaacaacgatgtgtcatgttttaatttgttgtttgtaaggatggtagg 31860320  T
Q  112 ttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||| |||||||| ||||||||    
T  31860321 ttaggttcgttcctacacaagaatttctc 31860349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 16115155 - 16115046
Alignment:
Q  31 gttgatttatattttgataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacaca 130  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||    
T  16115155 gttgatttatttttttataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcttacaca 16115056  T
Q  131 ataatttctc 140  Q
    | ||||||||    
T  16115055 aaaatttctc 16115046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 7317772 - 7317899
Alignment:
Q  13 gagagagagaaaggattagttgatttatattttgataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggt 112  Q
    |||||||||||| || |||||||||||| |||| |||||||||||||||||||| ||| | ||||||| ||||||||| |||||| ||||||||||||||    
T  7317772 gagagagagaaatgactagttgatttatttttttataattattttaaaagaaaaaaacaatgtgtcatgttttaatttattgtttgtaaggatgataggt 7317871  T
Q  113 taggttcgtttctacacaataatttctc 140  Q
    |||||||||| |||||||| ||||||||    
T  7317872 taggttcgttcctacacaagaatttctc 7317899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 31860148 - 31860076
Alignment:
Q  71 gacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctcgat 143  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  31860148 gacgtgtcatgttttaatttgttgtttataaggatgataggttaggttcgttcctacacaagaatttctcgat 31860076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 42028765 - 42028842
Alignment:
Q  63 aaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||    
T  42028765 aaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 42028842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 36059278 - 36059351
Alignment:
Q  67 caacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||||||| |||||||||||||||| ||||||||||| |||||||||||| |||||||| ||||||||    
T  36059278 caacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 36059351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 31470678 - 31470587
Alignment:
Q  48 taattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||||||| ||||||| |||||||||| |||||||||||||||| |||  |||||| |||||||||||| |||||||| ||||||||    
T  31470678 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgata-gttaggttcgttcctacacaagaatttctc 31470587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 38086140 - 38086231
Alignment:
Q  49 aattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||||| ||||||| ||||| ||||||||||||||||||||| |||| |||||| |||||||| ||  |||||||| ||||||||    
T  38086140 aattattttaaaataaaacaatgacgtatcatattttaatttgttgtttgtaagaatgatatgttaggtttgtccctacacaaaaatttctc 38086231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 63 - 141
Target Start/End: Original strand, 16115231 - 16115309
Alignment:
Q  63 aaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctcg 141  Q
    ||||||| || ||||||||||||| |||||||||| |||| ||||||||||||||||||| |||||||| |||||||||    
T  16115231 aaaacaatgaagtgtcatattttagtttgttgtttgtaagaatgataggttaggttcgttcctacacaaaaatttctcg 16115309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 2059567 - 2059490
Alignment:
Q  63 aaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||| || ||||||||||||| |||||||||| |||||||||||||||||||||||| |||| ||| ||||||||    
T  2059567 aaaacaatgaagtgtcatattttagtttgttgtttgtaaggatgataggttaggttcgttcctacccaagaatttctc 2059490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 7317712 - 7317635
Alignment:
Q  63 aaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||||||||||| ||||| |||||||||  |||||||||||||||||||||||| |||||||| | ||||||    
T  7317712 aaaacaacgacgtgtcatgttttagtttgttgttagtaaggatgataggttaggttcgttcctacacaaaagtttctc 7317635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 15332844 - 15332926
Alignment:
Q  58 aaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||| ||||||| |||||||||| ||||||||| |||||| |||| |||||| |||||||||||| |||||||| ||||||||    
T  15332844 aaaataaaacaatgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 15332926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 13279898 - 13279840
Alignment:
Q  82 ttttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||||||||| |||||||||||| ||||||||||| |||||||| ||||||||    
T  13279898 ttttaatttgttgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 13279840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 38086038 - 38085967
Alignment:
Q  68 aacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||||| |||||||||||||||| |||| |||||| ||||| |||||| |||||||| ||||||||    
T  38086038 aacgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttagtttcgttcctacacaagaatttctc 38085967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 139
Target Start/End: Complemental strand, 3671886 - 3671822
Alignment:
Q  74 gtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttct 139  Q
    ||||||| |||||||||||||||| |||| |||||| |||||||||||| |||||||| |||||||    
T  3671886 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttct 3671822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 3671996 - 3672087
Alignment:
Q  49 aattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||||| ||||||| ||||||| ||||||||||||||| ||| |||  ||||||  |||| |||||| || || || ||||||||    
T  3671996 aattattttaaaataaaacaatgacgtgttatattttaatttgttatttgtaaaaatgatatattagattcgttcctccataagaatttctc 3672087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 31470776 - 31470841
Alignment:
Q  74 gtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||  ||||||||||||||| |||| ||||||| ||||||||||| |||||||| ||||||||    
T  31470776 gtgtcattatttaatttgttgtttgtaagaatgatag-ttaggttcgttcctacacaaaaatttctc 31470841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 16335168 - 16335109
Alignment:
Q  141 gattaatgaactgctttgattcttcgaaatttaaatcc---atcgaatcaatccattttg 197  Q
    ||||||||||||| |||||||| |||||||||||||||   || ||||||||||||||||    
T  16335168 gattaatgaactgttttgattcatcgaaatttaaatccaatattgaatcaatccattttg 16335109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 346
Target Start/End: Complemental strand, 16335047 - 16335016
Alignment:
Q  315 gaataaattagatggataattcattttattta 346  Q
    ||||||||||||||||||||||||||||||||    
T  16335047 gaataaattagatggataattcattttattta 16335016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 15330505 - 15330449
Alignment:
Q  83 tttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||| |||||| |||| ||||||| ||||||||||| |||||||| ||||||||    
T  15330505 tttaatttattgtttgtaagaatgatag-ttaggttcgttcctacacaagaatttctc 15330449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 26534634 - 26534762
Alignment:
Q  12 agagagagagaaaggattagttgatttatattttgataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgatagg 111  Q
    |||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  26534634 agagagagagaaaggactagttgatttatttttttataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatagg 26534733  T
Q  112 ttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||| |||||||| ||||||||    
T  26534734 ttaggttcgttcctacacaagaatttctc 26534762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 791720 - 791591
Alignment:
Q  12 agagagagagaaaggattagttgatttatattttgataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgatagg 111  Q
    |||||||||||||||| ||||| |||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||    
T  791720 agagagagagaaaggactagttaatttatttttttataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtagg 791621  T
Q  112 ttaggttcgtttctacacaataatttctcg 141  Q
    ||||||||||| |||||||| |||||||||    
T  791620 ttaggttcgttcctacacaaaaatttctcg 791591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 130384 - 130512
Alignment:
Q  12 agagagagagaaaggattagttgatttatattttgataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgatagg 111  Q
    |||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||    
T  130384 agagagagagaaaggactagttgatttatttttttataattattttaaaagaaaacaacgacgtgttatgttttaatttgttgtttgtaaggatgatagg 130483  T
Q  112 ttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||| ||||| || ||||||||    
T  130484 ttaggttcgttactacaaaagaatttctc 130512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 8323844 - 8323970
Alignment:
Q  13 gagagagagaaaggattagttgatttatattttg-ataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgatagg 111  Q
    ||||||||||||||| |||||||||||| ||||  |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |    
T  8323844 gagagagagaaaggactagttgatttattttttttataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatg 8323943  T
Q  112 ttaggttcgtttctacacaataatttc 138  Q
    ||||||||||| |||||||| ||||||    
T  8323944 ttaggttcgttcctacacaagaatttc 8323970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 42630848 - 42630968
Alignment:
Q  17 gagagaaaggattagttgatttatattttgataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttagg 116  Q
    |||||| |||| ||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  42630848 gagagagaggactagttgattcatttttttataattattttaaaagaaaacaacgacgtgtcatattttaatttattgtttgtaaggatgataggttagg 42630947  T
Q  117 ttcgtttctacacaataattt 137  Q
    |||||  |||||||| |||||    
T  42630948 ttcgtgcctacacaagaattt 42630968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 5146675 - 5146767
Alignment:
Q  48 taattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||||||| ||||||| |||||||||| |||||||||||||||| |||| ||||||  |||||||||||||||||||| ||||||||    
T  5146675 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtttctacacaagaatttctc 5146767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 63 - 141
Target Start/End: Complemental strand, 26534583 - 26534505
Alignment:
Q  63 aaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctcg 141  Q
    |||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||| |||||||| |||||||||    
T  26534583 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgttcctacacaagaatttctcg 26534505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 228809 - 228717
Alignment:
Q  48 taattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||||||| |||||||  ||||||||| ||||||||| ||||||||||| |||||| |||||||||||| ||||||| |||||||||    
T  228809 taattattttaaaataaaacaataacgtgtcatgttttaatttattgtttataagaatgatatgttaggttcgttcctacacagtaatttctc 228717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 33377820 - 33377912
Alignment:
Q  48 taattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||||||| ||||||| |||||||||| |||||||||||||||| |||| |||||| |||||||||||| ||||| || ||||||||    
T  33377820 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacataagaatttctc 33377912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 8489214 - 8489123
Alignment:
Q  49 aattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| |||||| ||||| || ||| |||||||| ||||||||    
T  8489214 aattattttaaaataaaacaatgacgtgtcatattttaatttgttgtttgtaagaatgatatgttagatttgttcctacacaagaatttctc 8489123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 19898927 - 19899018
Alignment:
Q  49 aattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||||| ||||||| ||| |||||| ||||||||||||||||||||  |||||| |||||||||||| |||||||| ||||||||    
T  19898927 aattattttaaaataaaacaatgacatgtcatgttttaatttgttgtttataaaaatgatatgttaggttcgttcctacacaagaatttctc 19899018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 130331 - 130254
Alignment:
Q  63 aaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||||||||||| |||||||||||||||| ||||| ||| |||||||||||||| |||||||| ||||||||    
T  130331 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgacaggttaggttcgttcctacacaagaatttctc 130254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 8323784 - 8323707
Alignment:
Q  63 aaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||||||||||| ||||||||| |||||| ||| |||||||||||||||||||| |||||||| ||||||||    
T  8323784 aaaacaacgacgtgtcatgttttaatttattgtttgtaaagatgataggttaggttcgttcctacacaagaatttctc 8323707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 13823320 - 13823412
Alignment:
Q  48 taattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||||||| ||||||| |||||||||| |||||||||||| ||| |||  |||||| |||| ||||||| |||||||| ||||||||    
T  13823320 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttatttgtaaaaatgatatgttaagttcgttcctacacaagaatttctc 13823412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 6518294 - 6518203
Alignment:
Q  49 aattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||||| ||||||| ||| ||  || |||||||||||||||| |||| |||||| |||||||||||| |||||||| ||||||||    
T  6518294 aattattttaaaataaaacaatgacatgcaatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 6518203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 63 - 141
Target Start/End: Complemental strand, 42630788 - 42630710
Alignment:
Q  63 aaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctcg 141  Q
    ||||||| || ||||||| ||||| |||||||||| ||||||||||||||||||||||||  ||||||| |||||||||    
T  42630788 aaaacaatgaagtgtcatgttttagtttgttgtttgtaaggatgataggttaggttcgttcatacacaagaatttctcg 42630710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 40881992 - 40882065
Alignment:
Q  49 aattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtt 122  Q
    ||||||||||||| |||||||  |||||||||||||||||||||||||| |||| |||||| ||||| ||||||    
T  40881992 aattattttaaaataaaacaataacgtgtcatattttaatttgttgtttgtaagaatgatatgttagattcgtt 40882065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 140
Target Start/End: Complemental strand, 14069928 - 14069861
Alignment:
Q  72 acgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||||| ||||||||||||||||||||| |||||| |||||||||||| |||||||| ||||||||    
T  14069928 acgtgtcatgttttaatttgttgtttataagaatgata-gttaggttcgttcctacacaagaatttctc 14069861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 35454623 - 35454710
Alignment:
Q  49 aattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataattt 137  Q
    ||||||||| ||  ||||||| |||||||||| |||||||||||||||| |||| |||||| |||||||||||| |||||||| |||||    
T  35454623 aattatttttaactaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaattt 35454710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 40881881 - 40881792
Alignment:
Q  49 aattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||||| ||||||| |||||||||| ||||||||| |||||| |||| || ||  |||||||||||| |||||||| ||||||||    
T  40881881 aattattttaaaataaaacaatgacgtgtcatgttttaatttattgtttgtaagaataat--gttaggttcgttcctacacaacaatttctc 40881792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 19897293 - 19897228
Alignment:
Q  71 gacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataattt 137  Q
    |||||||||| |||||||||||||||| |||| |||||| |||||||||||| ||||||||||||||    
T  19897293 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaataattt 19897228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 791810 - 791867
Alignment:
Q  83 tttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||||||| ||| |||||||||||||||||||| |||||||| ||||||||    
T  791810 tttaatttgttgtttgtaaagatgataggttaggttcgttcctacacaagaatttctc 791867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 140
Target Start/End: Complemental strand, 5146571 - 5146504
Alignment:
Q  72 acgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||||| ||||||||| |||||| |||| ||||||| ||||||||||| |||||||||||||||||    
T  5146571 acgtgtcatgttttaatttattgtttgtaagaatgatag-ttaggttcgttcctacacaataatttctc 5146504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 6518404 - 6518466
Alignment:
Q  77 tcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||||||||||||| |||| |||||| |||||||||||| |||||||| ||||||||    
T  6518404 tcatattttaatttgttgtttgtaagaatgata-gttaggttcgttactacacaagaatttctc 6518466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 140
Target Start/End: Original strand, 14388515 - 14388583
Alignment:
Q  71 gacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||| |||||||||||||||| |||| |||||| |||||||| ||| |||||||| ||||||||    
T  14388515 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggtttgttcctacacaagaatttctc 14388583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 140
Target Start/End: Complemental strand, 35454519 - 35454451
Alignment:
Q  71 gacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||| |||||||||||||||| |||| |||||| ||||||||||||  ||||||| ||||||||    
T  35454519 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcatacacaagaatttctc 35454451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 56 - 140
Target Start/End: Complemental strand, 13823233 - 13823150
Alignment:
Q  56 ttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||| ||  ||||||||| ||||| ||| ||||||||| | |||||| |||||||||||| |||||||| ||||||||    
T  13823233 ttaaaagaaaaaaaatacgtgtcatgttttagtttattgtttatacgaatgata-gttaggttcgttcctacacaagaatttctc 13823150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 27319643 - 27319706
Alignment:
Q  52 tattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttag 115  Q
    |||||||||| ||||||| || || ||||||||||||||||||||| |||| |||||| |||||    
T  27319643 tattttaaaataaaacaatgatgtttcatattttaatttgttgtttgtaagaatgatatgttag 27319706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 228990 - 229044
Alignment:
Q  82 ttttaatttgttgtttataaggatgataggttaggttcgtttctacacaataattt 137  Q
    |||||||||||||||| |||| |||||| |||| |||||||||||||||| |||||    
T  228990 ttttaatttgttgtttgtaagaatgata-gttatgttcgtttctacacaaaaattt 229044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 5e-50; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 26552128 - 26552256
Alignment:
Q  12 agagagagagaaaggattagttgatttatattttgataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgatagg 111  Q
    |||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26552128 agagagagagaaaggactagttgatttatttttttataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttgtaaggatgatagg 26552227  T
Q  112 ttaggttcgtttctacacaataatttctc 140  Q
    ||||||||| | |||||||| ||||||||    
T  26552228 ttaggttcgatcctacacaagaatttctc 26552256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 10227839 - 10227712
Alignment:
Q  13 gagagagagaaaggattagttgatttatattttgataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggt 112  Q
    ||||||||||||||| ||||| |||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||    
T  10227839 gagagagagaaaggactagttaatttatttttttataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggt 10227740  T
Q  113 taggttcgtttctacacaataatttctc 140  Q
    |||||||||| |||||||| ||||||||    
T  10227739 taggttcgttcctacacaagaatttctc 10227712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 19059514 - 19059633
Alignment:
Q  12 agagagagagaaaggattagttgatttatattttgataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgatagg 111  Q
    |||||||||||||| | | |||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  19059514 agagagagagaaagtactggttgatttatttttttataattattttaaaagaaaacaacgatgtgtcatattttaatttgttctttataaggatgatagg 19059613  T
Q  112 ttaggttcgtttctacacaa 131  Q
    ||||||||||| ||||||||    
T  19059614 ttaggttcgttcctacacaa 19059633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 19059451 - 19059378
Alignment:
Q  63 aaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatt 136  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||| ||||    
T  19059451 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatt 19059378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 50893055 - 50892963
Alignment:
Q  48 taattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||||||| ||||||| |||||||||| |||||||||||||||| |||| |||||| |||| ||||||| |||||||| ||||||||    
T  50893055 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaagttcgttgctacacaaaaatttctc 50892963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 28217692 - 28217783
Alignment:
Q  49 aattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||||| ||||||| || ||||||| |||| ||||||||||| |||| |||||| |||||||||||| |||||||||||||||||    
T  28217692 aattattttaaaataaaacaatgatgtgtcatgttttgatttgttgtttgtaagaatgatatgttaggttcgttcctacacaataatttctc 28217783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 23346510 - 23346419
Alignment:
Q  49 aattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||||| |||| || |||||||||| ||||||||| |||||| |||| |||||| |||||||||||| |||||||| ||||||||    
T  23346510 aattattttaaaataaaaaaatgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 23346419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 26552067 - 26551992
Alignment:
Q  63 aaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttc 138  Q
    |||||||||||||| ||||||||||||| |||||| ||||||||||||||||| |||||| |||||||| ||||||    
T  26552067 aaaacaacgacgtgccatattttaattttttgtttgtaaggatgataggttagattcgttcctacacaagaatttc 26551992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 48 - 139
Target Start/End: Original strand, 39669230 - 39669321
Alignment:
Q  48 taattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttct 139  Q
    |||||||||||||| |||||||  ||||||||| |||||||||||| ||| |||| |||||| |||| |||||||||||||||| |||||||    
T  39669230 taattattttaaaataaaacaataacgtgtcatgttttaatttgttctttgtaagaatgatatgttaagttcgtttctacacaagaatttct 39669321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 48871410 - 48871501
Alignment:
Q  49 aattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||||| ||||||| ||||||  || |||||||||||||||| |||| |||||| |||||||||||| |||||||| ||||||||    
T  48871410 aattattttaaaataaaacaatgacgtgcaatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 48871501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 10227910 - 10227976
Alignment:
Q  74 gtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||    
T  10227910 gtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 10227976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 41833966 - 41833874
Alignment:
Q  48 taattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||||||| |||| || |||||||||| |||||||||||||| | |||| ||||||  |||| |||||||||| |||| ||||||||    
T  41833966 taattattttaaaataaaataatgacgtgtcatgttttaatttgttgtgtgtaagaatgatatattagattcgtttctatacaagaatttctc 41833874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 71 - 140
Target Start/End: Original strand, 7062192 - 7062260
Alignment:
Q  71 gacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||||||||||||||||||| |||  |||||| |||||||||||| |||||||| ||||||||    
T  7062192 gacgtgtcatattttaatttgttgtttgtaaaaatgata-gttaggttcgttcctacacaaaaatttctc 7062260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 7062098 - 7062038
Alignment:
Q  49 aattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgata 109  Q
    ||||||||||||| ||||||| |||||||||| |||||||||||||||| |||| ||||||    
T  7062098 aattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgata 7062038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 140
Target Start/End: Original strand, 48752589 - 48752657
Alignment:
Q  71 gacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||| |||||||||||||||| |||| |||||| ||||||||||||  ||||||| ||||||||    
T  48752589 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcatacacaagaatttctc 48752657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 50905107 - 50905175
Alignment:
Q  71 gacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttct 139  Q
    ||||| |||| |||||||||||||||| |||| |||||| ||||| ||||||| ||||||| |||||||    
T  50905107 gacgtatcatgttttaatttgttgtttgtaagaatgatatgttagattcgtttttacacaaaaatttct 50905175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 42180639 - 42180565
Alignment:
Q  71 gacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctcgattaa 146  Q
    |||||||||| |||||||||||||||| |||  ||| ||| ||||||||||| |||||||| |||||||| |||||    
T  42180639 gacgtgtcatgttttaatttgttgtttgtaataatgctag-ttaggttcgttcctacacaagaatttctcaattaa 42180565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 140
Target Start/End: Complemental strand, 48871312 - 48871247
Alignment:
Q  74 gtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||| |||||||||||| ||| |||| ||||||| ||||||||||| |||||||| ||||||||    
T  48871312 gtgtcatgttttaatttgttatttgtaagaatgatag-ttaggttcgttcctacacaagaatttctc 48871247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 50893161 - 50893226
Alignment:
Q  74 gtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||| |||||||||||||||| |||  ||||||| ||||||||||| |||||||| ||||||||    
T  50893161 gtgtcatgttttaatttgttgtttgtaataatgatag-ttaggttcgttcctacacaagaatttctc 50893226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 140
Target Start/End: Complemental strand, 28217598 - 28217530
Alignment:
Q  71 gacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||| |||||||||||||||| |||| ||||||  ||||||||||| |||||||  ||||||||    
T  28217598 gacgtgtcatgttttaatttgttgtttgtaagaatgata-attaggttcgttcctacacaggaatttctc 28217530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 139
Target Start/End: Complemental strand, 50905080 - 50904992
Alignment:
Q  53 attttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggt--taggttcgtttctacacaataatttct 139  Q
    ||||||||| ||||||| |||||||||| |||||| ||||||||| |||  ||||||  |  |||||||||| |||||||| |||||||    
T  50905080 attttaaaataaaacaatgacgtgtcatgttttaacttgttgtttgtaaaaatgatatatattaggttcgttcctacacaagaatttct 50904992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 23346620 - 23346676
Alignment:
Q  75 tgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaat 132  Q
    |||||| ||||||||| |||||| |||| ||||||| ||||||||||| |||||||||    
T  23346620 tgtcatgttttaatttattgtttgtaagaatgatag-ttaggttcgttcctacacaat 23346676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 140
Target Start/End: Original strand, 41834071 - 41834139
Alignment:
Q  71 gacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||| |||||||||||||||| |||  ||| || |||| ||||||| |||||||| ||||||||    
T  41834071 gacgtgtcatgttttaatttgttgtttgtaataatgcta-gttatgttcgttcctacacaagaatttctc 41834139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 42180744 - 42180805
Alignment:
Q  48 taattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgata 109  Q
    |||||||||||||| |||| || || ||||||| ||||| |||||||||| |||| ||||||    
T  42180744 taattattttaaaataaaataatgatgtgtcatgttttagtttgttgtttgtaagaatgata 42180805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 12 - 140
Target Start/End: Complemental strand, 33214571 - 33214443
Alignment:
Q  12 agagagagagaaaggattagttgatttatattttgataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgatagg 111  Q
    ||||||||||||| || |||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  33214571 agagagagagaaatgactagttgatttatttttttataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatagg 33214472  T
Q  112 ttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||| |||||||| ||||||||    
T  33214471 ttaggttcgttcctacacaagaatttctc 33214443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 27073047 - 27073172
Alignment:
Q  15 gagagagaaaggattagttgatttatattttgataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggtta 114  Q
    ||||||||||||| | |||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  27073047 gagagagaaaggacttgttgatttatttttttataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggtta 27073146  T
Q  115 ggttcgtttctacacaataatttctc 140  Q
    |||||||| |||||||| ||||||||    
T  27073147 ggttcgttcctacacaagaatttctc 27073172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 36274247 - 36274119
Alignment:
Q  12 agagagagagaaaggattagttgatttatattttgataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgatagg 111  Q
    |||||||||||||| | |||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |    
T  36274247 agagagagagaaagaactagttgatttatttttttataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatg 36274148  T
Q  112 ttaggttcgtttctacacaataatttctcg 141  Q
    ||||||||||| |||||||| |||||||||    
T  36274147 ttaggttcgttcctacacaa-aatttctcg 36274119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 33214626 - 33214703
Alignment:
Q  63 aaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||| |||||||| ||||||||    
T  33214626 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgttcctacacaagaatttctc 33214703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 36635410 - 36635502
Alignment:
Q  48 taattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||||||| ||||||| |||||||||| |||||||||||||||| |||  |||||| |||||||||||| |||||||| ||||||||    
T  36635410 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctc 36635502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 10598885 - 10598810
Alignment:
Q  63 aaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttc 138  Q
    |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||| |||||||| ||||||    
T  10598885 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaagatgataggttaggttcgttcctacacaagaatttc 10598810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 19580483 - 19580574
Alignment:
Q  49 aattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||||| ||||||| ||| |||||| |||||||||||||||| |||| |||||| |||||||||||| ||| |||| ||||||||    
T  19580483 aattattttaaaataaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctatacaagaatttctc 19580574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 33219149 - 33219072
Alignment:
Q  63 aaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||| ||||  |||| |||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||    
T  33219149 aaaacaatgacgaatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 33219072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 36274312 - 36274389
Alignment:
Q  63 aaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||||||||||| |||||||||||||||| ||| ||||||||||||| |||||| ||||| || ||||||||    
T  36274312 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaagatgataggttagattcgttcctacataagaatttctc 36274389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 10599004 - 10599063
Alignment:
Q  82 ttttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctcg 141  Q
    |||||||||||||||| ||||||||||| |||||||||||||| |||||| |||||||||    
T  10599004 ttttaatttgttgtttgtaaggatgatatgttaggttcgtttccacacaagaatttctcg 10599063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 27072971 - 27072913
Alignment:
Q  82 ttttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||||||||| |||||||||||| ||||||||||| |||||||| ||||||||    
T  27072971 ttttaatttgttgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 27072913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 33219209 - 33219265
Alignment:
Q  13 gagagagagaaaggattagttgatttatattttgataattattttaaaagaaaacaa 69  Q
    ||||||||||||||| |||||||||||  |||| |||||||||||||||||||||||    
T  33219209 gagagagagaaaggactagttgatttaattttttataattattttaaaagaaaacaa 33219265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 11651091 - 11651000
Alignment:
Q  49 aattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||||| ||||||| ||  | ||||||||||| ||||||||| |||| |||||| ||||||||||||  || |||| ||||||||    
T  11651091 aattattttaaaataaaacaatgatatatcatattttaaattgttgtttgtaagaatgatatgttaggttcgttcataaacaagaatttctc 11651000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 36635305 - 36635241
Alignment:
Q  72 acgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataattt 137  Q
    ||||||||| |||||||||||||||| |||  |||||| |||||||||||| |||||||| |||||    
T  36635305 acgtgtcatgttttaatttgttgtttgtaacaatgata-gttaggttcgttcctacacaagaattt 36635241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 10598945 - 10599001
Alignment:
Q  13 gagagagagaaaggattagttgatttatattttg-ataattattttaaaagaaaaca 68  Q
    |||||||| ||| || |||||||||||| ||||  ||||||||||||||||||||||    
T  10598945 gagagagaaaaatgactagttgatttattttttttataattattttaaaagaaaaca 10599001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 40534100 - 40534227
Alignment:
Q  13 gagagagagaaaggattagttgatttatattttgataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggt 112  Q
    ||||||||||||||| |||||||||||  |||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  40534100 gagagagagaaaggactagttgatttaattttttataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggt 40534199  T
Q  113 taggttcgtttctacacaataatttctc 140  Q
    |||||||||| |||||||| ||||||||    
T  40534200 taggttcgttcctacacaagaatttctc 40534227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 3102677 - 3102804
Alignment:
Q  13 gagagagagaaaggattagttgatttatattttgataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggt 112  Q
    ||||||||||||||| |||||||||||  |||| ||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  3102677 gagagagagaaaggactagttgatttaattttttataattattttaaaaaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggt 3102776  T
Q  113 taggttcgtttctacacaataatttctc 140  Q
    |||||||||| |||||||| ||||||||    
T  3102777 taggttcgttcctacacaagaatttctc 3102804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 9231717 - 9231825
Alignment:
Q  13 gagagagagaaaggattagttgatttatattttgataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggt 112  Q
    ||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||  ||| |||||||||||||||| ||||||||||||||    
T  9231717 gagagagagaaaggactagttgatttatttttttataattattttaaaagaaaacaacgacgtagcatgttttaatttgttgtttgtaaggatgataggt 9231816  T
Q  113 taggttcgt 121  Q
    |||||||||    
T  9231817 taggttcgt 9231825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 3102617 - 3102540
Alignment:
Q  63 aaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||    
T  3102617 aaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 3102540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 13690292 - 13690216
Alignment:
Q  63 aaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttct 139  Q
    ||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||    
T  13690292 aaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 13690216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 9231657 - 9231580
Alignment:
Q  63 aaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||||||||||| |||||||||||||||| |||||||| |||| |||||||||| |||||||| ||||||||    
T  9231657 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggctaggttcgttcctacacaagaatttctc 9231580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 40534040 - 40533963
Alignment:
Q  63 aaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||||| |||| |||||||||||||||| |||| ||||||||||||||||||| |||||||| ||||||||    
T  40534040 aaaacaacgacgtatcatgttttaatttgttgtttgtaagaatgataggttaggttcgttcctacacaagaatttctc 40533963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 18936850 - 18936941
Alignment:
Q  49 aattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||||| ||||||| |||||||||| ||||||||| |||||| |||| ||||||  ||||||||||| ||| |||| ||||||||    
T  18936850 aattattttaaaataaaacaatgacgtgtcatgttttaatttattgtttgtaagaatgatatattaggttcgttcctagacaagaatttctc 18936941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 37177799 - 37177890
Alignment:
Q  49 aattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||||| ||||||| ||||| |||| |||||||||||||||| |||| |||||| |||| ||||||| ||| |||| ||||||||    
T  37177799 aattattttaaaataaaacaatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttatgttcgttcctagacaagaatttctc 37177890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 71 - 140
Target Start/End: Complemental strand, 11147083 - 11147014
Alignment:
Q  71 gacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||| |||||||||||||||| |||| ||||||  ||||||||||| |||||||| ||||||||    
T  11147083 gacgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgttcctacacaagaatttctc 11147014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 18381488 - 18381573
Alignment:
Q  55 tttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||| ||||||| || ||||||| ||||||||||||| || |||| |||| | |||||||||||| |||||||| ||||||||    
T  18381488 tttaaaataaaacaatgatgtgtcatgttttaatttgttgcttgtaagaatgaaatgttaggttcgttcctacacaagaatttctc 18381573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 5121005 - 5121071
Alignment:
Q  74 gtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||| |||||||||||||||| |||| |||||| |||||||| ||| |||||||| ||||||||    
T  5121005 gtgtcatgttttaatttgttgtttgtaagaatgatatgttaggtttgttcctacacaagaatttctc 5121071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 18936755 - 18936676
Alignment:
Q  60 aagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||| || ||||| |||| |||||||||||||||| |||| |||||| |||| |||||||  ||||||| ||||||||    
T  18936755 aagaaaaaaatgacgtatcatgttttaatttgttgtttgtaagaatgata-gttatgttcgttcatacacaagaatttctc 18936676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 37994845 - 37994972
Alignment:
Q  13 gagagagagaaaggattagttgatttatattttgataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggt 112  Q
    ||||||||||||||| |||||||||||  |||| |||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||    
T  37994845 gagagagagaaaggactagttgatttaattttttataattattttaaaagaaaacaacgacgtgtcatgttttaatttattgtttgtaaggatgataggt 37994944  T
Q  113 taggttcgtttctacacaataatttctc 140  Q
    |||||||||| |||||||| ||||||||    
T  37994945 taggttcgttcctacacaagaatttctc 37994972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 397177 - 397269
Alignment:
Q  48 taattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||||||| ||||||| |||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||    
T  397177 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttataagaatgatatgttaggttcgtttctacacaagaatttctc 397269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 41539861 - 41539770
Alignment:
Q  49 aattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||||| ||||||||    
T  41539861 aattattttaaaataaaacaacgacgtgtcatattttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 41539770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 2814416 - 2814508
Alignment:
Q  48 taattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||| ||| ||||||| |||||||||| |||||||||||||||| |||| |||||| |||||||||||| |||||||| ||||||||    
T  2814416 taattatttttaaaaaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 2814508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 25101834 - 25101748
Alignment:
Q  36 tttatattttgataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtt 122  Q
    ||||| |||| |||||||||||||||||||||||| | ||||||||||||| ||||||||||  ||| |||||||||||||||||||    
T  25101834 tttatttttttataattattttaaaagaaaacaacaatgtgtcatattttattttgttgtttgcaagaatgataggttaggttcgtt 25101748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 37994785 - 37994708
Alignment:
Q  63 aaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||||| |||| ||||||||| |||||| |||||||||||||||||||||||| |||||||| ||||||||    
T  37994785 aaaacaacgacgtatcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 37994708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 44036891 - 44036814
Alignment:
Q  63 aaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||  |||||||  ||||||||    
T  44036891 aaaacaacgacgtgtcatgtttgaatttgttgtttgtaaggatgataggttaggttcgtccctacacatgaatttctc 44036814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 44036951 - 44037018
Alignment:
Q  13 gagagagagaaaggattagttgatttatattttgataattattttaaaagaaaacaacgacgtgtcat 80  Q
    |||||||||||| ||||| || |||||| |||| ||||||||||||||||||||||||||||||||||    
T  44036951 gagagagagaaatgattaattaatttatttttttataattattttaaaagaaaacaacgacgtgtcat 44037018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 14193509 - 14193588
Alignment:
Q  60 aagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||| || |||||||||| |||||||||||||||| |||| |||||| |||||||||||| |||||||| ||||||||    
T  14193509 aagaaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 14193588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 41539963 - 41540034
Alignment:
Q  68 aacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||||| |||||||||||||||| |||| |||||| |||||||||||| |||||||| ||||||||    
T  41539963 aacgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 41540034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 2814319 - 2814243
Alignment:
Q  63 aaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||| |||||||||||||  ||||||||||||||| |||| |||||| |||||||||||| |||||||| ||||||||    
T  2814319 aaaaaaacgacgtgtcatgatttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 2814243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 14193414 - 14193324
Alignment:
Q  49 aattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||||| ||||||| || ||||||| |||||||||||||||| |||  || ||| |||||||||||| ||| |||| ||||||||    
T  14193414 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaaaaataatatgttaggttcgttccta-acaaaaatttctc 14193324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 397083 - 397007
Alignment:
Q  63 aaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||| ||| |||||| || ||||||||| |||||| |||| ||||||| ||||||||||| || ||||| ||||||||    
T  397083 aaaaaaacaacgtgttatgttttaatttattgtttgtaagaatgatag-ttaggttcgttcctgcacaagaatttctc 397007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 33022304 - 33022431
Alignment:
Q  12 agagagagagaaaggattagttgatttatattttgataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgatagg 111  Q
    ||||||||||||| || |||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |    
T  33022304 agagagagagaaatgactagttgatttatttttttataattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatg 33022403  T
Q  112 ttaggttcgtttctacacaataatttct 139  Q
    ||||||||||| |||||||| |||||||    
T  33022404 ttaggttcgttcctacacaagaatttct 33022431  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 33022241 - 33022164
Alignment:
Q  63 aaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  33022241 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaataatttctc 33022164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 21389113 - 21389021
Alignment:
Q  48 taattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||||||| ||||||| ||||| |||| |||||||||||||||| |||| |||||| |||||||||||| ||||| || ||||||||    
T  21389113 taattattttaaaataaaacaatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacagaagaatttctc 21389021  T

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Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 139
Target Start/End: Original strand, 7789842 - 7789933
Alignment:
Q  48 taattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttct 139  Q
    ||||||||||  || ||||||| |||||||||| |||||||||||||||| |||| |||||| ||||||||| || |||||||| |||||||    
T  7789842 taattattttttaaaaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcattcctacacaagaatttct 7789933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 21389217 - 21389282
Alignment:
Q  71 gacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataattt 137  Q
    |||||||||| |||||||||||||||| |||| |||||| |||||||||||| |||||||| |||||    
T  21389217 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaattt 21389282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 139
Target Start/End: Original strand, 28472535 - 28472624
Alignment:
Q  50 attattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttct 139  Q
    ||||||||||||||||| ||  |||||| ||  |||||||||||||||||||  ||||||  ||||||||||| ||||| || |||||||    
T  28472535 attattttaaaagaaaaaaataacgtgttatgatttaatttgttgtttataaaaatgatatattaggttcgttcctacataaaaatttct 28472624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 7789748 - 7789678
Alignment:
Q  58 aaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacac 129  Q
    |||| ||||||| ||| |||||| |||||||||||||||| |||| |||||| |||||||||||| ||||||    
T  7789748 aaaaaaaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacac 7789678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 139
Target Start/End: Original strand, 29859723 - 29859813
Alignment:
Q  50 attattttaaaagaaaacaacga-cgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttct 139  Q
    ||||||||||||||||| ||  | ||||| ||  |||||||||||||||||||  ||||||  ||||||||||| ||||| || |||||||    
T  29859723 attattttaaaagaaaaaaaataacgtgttatgatttaatttgttgtttataaaaatgatatattaggttcgttcctacataaaaatttct 29859813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 11754 - 11630
Alignment:
Q  13 gagagagagaaaggattagttgattta-tattttgataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgatagg 111  Q
    ||||||||||||||| ||||||||||| | |||| ||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||    
T  11754 gagagagagaaaggactagttgatttagtttttttataattattttaaaagaaaacaatgatgtgtcatattttaatttgttgtttgtaaggatgatagg 11655  T
Q  112 ttaggttcgtttctacacaataatt 136  Q
    ||||||||||| |||||||| ||||    
T  11654 ttaggttcgttcctacacaagaatt 11630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 11814 - 11891
Alignment:
Q  63 aaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||    
T  11814 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 11891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 19805549 - 19805678
Alignment:
Q  12 agagagagagaaaggattagttgatttatat-tttgataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgatag 110  Q
    ||||||||||||| || |||||||||||| | ||| ||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||    
T  19805549 agagagagagaaatgactagttgatttatttattttataattattttaaaagaaagcaacgacgtgtcatgttttaatttgttatttataaggatgatag 19805648  T
Q  111 gttaggttcgtttctacacaataatttctc 140  Q
    |||| ||||||| |||||||| ||||||||    
T  19805649 gttaagttcgttcctacacaagaatttctc 19805678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 7298727 - 7298635
Alignment:
Q  48 taattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||||||| ||||||| |||||||||| |||||||||||||||| |||  |||||| |||||||||||| |||||||| ||||||||    
T  7298727 taattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctc 7298635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 40521188 - 40521280
Alignment:
Q  48 taattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||||||| ||||||| || ||||||| |||||||||||||||| |||| |||||| |||||||||||| |||||||| ||||||||    
T  40521188 taattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 40521280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 19804874 - 19804797
Alignment:
Q  63 aaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||| ||||| | ||| |||||||||||| ||||||| |||||||||||||||| |||||||| ||||||||    
T  19804874 aaaacaacgatgtgtcgtgtttcaatttgttgtttgtaaggataataggttaggttcgttcctacacaagaatttctc 19804797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 140
Target Start/End: Complemental strand, 40521084 - 40521016
Alignment:
Q  71 gacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||||| ||||||||    
T  40521084 gacgtgtcatattttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 40521016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 140
Target Start/End: Original strand, 28949001 - 28949069
Alignment:
Q  71 gacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||| ||||||||| |||||| |||| ||||||| ||||||||||| |||||||| ||||||||    
T  28949001 gacgtgtcatgttttaatttattgtttgtaagaatgatag-ttaggttcgttcctacacaaaaatttctc 28949069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 7298833 - 7298900
Alignment:
Q  72 acgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||| || |||||||||||||||| |||| |||||| |||||||||||| |||||||| ||||||||    
T  7298833 acgtgttatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 7298900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 46568025 - 46567960
Alignment:
Q  71 gacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataattt 137  Q
    |||||||||| |||||||||||||||| |||| |||||| |||| ||||||| |||||||| |||||    
T  46568025 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaagttcgttcctacacaagaattt 46567960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 46568130 - 46568196
Alignment:
Q  48 taattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggtta 114  Q
    |||||||||| ||| ||||||| || ||||||| |||||||||||||||| |||| |||||| ||||    
T  46568130 taattatttttaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatgtta 46568196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 140
Target Start/End: Original strand, 16979613 - 16979681
Alignment:
Q  71 gacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||| |||||||||||| ||| |||| |||||| ||||| |||||| |||||||| ||||||||    
T  16979613 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttagattcgttcctacacaagaatttctc 16979681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 37583 - 37691
Alignment:
Q  13 gagagagagaaaggattagttgatttatattttgataattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggt 112  Q
    ||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||  ||| |||||||||||||||| ||||||||||||||    
T  37583 gagagagagaaaggactagttgatttatttttttataattattttaaaagaaaacaacgacgtagcatgttttaatttgttgtttgtaaggatgataggt 37682  T
Q  113 taggttcgt 121  Q
    |||||||||    
T  37683 taggttcgt 37691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 37523 - 37446
Alignment:
Q  63 aaaacaacgacgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    |||||||||||||||||| |||||||||||||||| |||||||| |||| |||||||||| |||||||| ||||||||    
T  37523 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggctaggttcgttcctacacaagaatttctc 37446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 140
Target Start/End: Complemental strand, 15915 - 15847
Alignment:
Q  72 acgtgtcatattttaatttgttgtttataaggatgataggttaggttcgtttctacacaataatttctc 140  Q
    ||||||||| |||||||||||||||| |||| |||||| |||||||||||| |||||||| ||||||||    
T  15915 acgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 15847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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