View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1365_low_24 (Length: 337)
Name: NF1365_low_24
Description: NF1365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1365_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 173 - 330
Target Start/End: Complemental strand, 36664150 - 36663995
Alignment:
| Q |
173 |
ttgctaaagttgaaggcactctacaatcacattctattgttctctttttccaacttcagcaacttcatttctcactcttccattcaacatttcctcaata |
272 |
Q |
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| T |
36664150 |
ttgctaaagttgaaggcactctacaatcacattctcttgttctctttttccaacttcagcaacttcatttctcactcttccattcaacatttcctcaata |
36664051 |
T |
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| Q |
273 |
aagcaaaatattctcttgtttatacacacactttaggtaacaataactacctatgcta |
330 |
Q |
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| T |
36664050 |
aagcaaaatattctcttgtttatac--acactttaggtaacaataactacctaggcta |
36663995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 36664320 - 36664265
Alignment:
| Q |
4 |
ttcttaaatgcaaaatgtcacttagctagttaatgaactttgaggattattgttag |
59 |
Q |
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| T |
36664320 |
ttcttaaatgcaaaatataacttagctagttaatgaactttgagaattattgttag |
36664265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 153
Target Start/End: Complemental strand, 36664204 - 36664170
Alignment:
| Q |
119 |
ggtttcttcggcgacagtcatggtagactaaactg |
153 |
Q |
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| T |
36664204 |
ggtttcttcagcgacagtcatggtagactaaactg |
36664170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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