View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1365_low_25 (Length: 306)
Name: NF1365_low_25
Description: NF1365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1365_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 30 - 212
Target Start/End: Complemental strand, 45595253 - 45595072
Alignment:
| Q |
30 |
cgtctgttcgataaactggcgattggatcaataactgagggggaacaactgtccaaaaaagtgaatgatctccacaaaggaaggtatgtaattggaaaaa |
129 |
Q |
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| T |
45595253 |
cgtctgttcgataaactggcgattggatcaataactgagggggaacaactgtccaaaaaagtgaatgatctccacaaaggaaggtatgtaattggaaaaa |
45595154 |
T |
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| Q |
130 |
atagaaaaacattaatgtaaatgtcaagtagtttaataataagttggataaatatgttttatatacatatcgtatatcatatt |
212 |
Q |
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| T |
45595153 |
atagaaaaacattaatgtaaatgtcaagtagtttaataat-agttggataaatatgttttatatacatatcgtatatcatatt |
45595072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 207 - 299
Target Start/End: Complemental strand, 45594993 - 45594904
Alignment:
| Q |
207 |
catattactcattcagagacatgtttacacctcagattatactaataatgattaaaacaatttatttatttgattgatatttggtctgtggtg |
299 |
Q |
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| T |
45594993 |
catattactcattcagagacatgtttacacctcagattatac---taatgattaaaacaatttatttatttgattgatatttggtttgtggtg |
45594904 |
T |
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