View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1365_low_27 (Length: 266)

Name: NF1365_low_27
Description: NF1365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1365_low_27
NF1365_low_27
[»] chr1 (11 HSPs)
chr1 (30-266)||(47436451-47436689)
chr1 (175-221)||(39940567-39940613)
chr1 (175-221)||(2492557-2492603)
chr1 (176-226)||(27545396-27545446)
chr1 (175-208)||(33939391-33939424)
chr1 (168-264)||(36141680-36141777)
chr1 (175-220)||(43929431-43929476)
chr1 (194-226)||(4540696-4540728)
chr1 (167-223)||(10506297-10506353)
chr1 (188-228)||(26545027-26545067)
chr1 (168-223)||(44746653-44746709)
[»] chr8 (12 HSPs)
chr8 (181-222)||(9793444-9793485)
chr8 (166-220)||(18959245-18959299)
chr8 (175-233)||(38414295-38414353)
chr8 (175-210)||(7258677-7258712)
chr8 (175-226)||(8793736-8793787)
chr8 (175-220)||(2296556-2296601)
chr8 (175-220)||(12958793-12958838)
chr8 (175-220)||(35011229-35011274)
chr8 (175-220)||(42786381-42786426)
chr8 (175-220)||(44796359-44796404)
chr8 (194-226)||(2627206-2627238)
chr8 (175-223)||(6197905-6197953)
[»] chr7 (11 HSPs)
chr7 (173-263)||(48872979-48873070)
chr7 (174-210)||(30138880-30138916)
chr7 (175-218)||(28949285-28949328)
chr7 (175-226)||(41850613-41850664)
chr7 (175-220)||(4826779-4826824)
chr7 (175-228)||(9555334-9555387)
chr7 (176-221)||(22752574-22752619)
chr7 (175-220)||(27231919-27231964)
chr7 (175-228)||(37101708-37101761)
chr7 (194-226)||(28038575-28038607)
chr7 (194-234)||(41247908-41247948)
[»] chr2 (8 HSPs)
chr2 (175-226)||(28249013-28249064)
chr2 (175-226)||(5109380-5109431)
chr2 (175-226)||(12873740-12873791)
chr2 (175-220)||(5528173-5528218)
chr2 (175-208)||(26234118-26234151)
chr2 (175-228)||(31102023-31102076)
chr2 (175-228)||(41153189-41153242)
chr2 (175-220)||(45034415-45034460)
[»] chr3 (14 HSPs)
chr3 (175-221)||(21970514-21970560)
chr3 (175-221)||(21992950-21992996)
chr3 (175-208)||(336079-336112)
chr3 (165-226)||(1755866-1755927)
chr3 (175-212)||(24596904-24596941)
chr3 (175-226)||(39836941-39836992)
chr3 (198-263)||(52532721-52532787)
chr3 (183-232)||(21730147-21730196)
chr3 (175-208)||(38677578-38677611)
chr3 (175-208)||(41743684-41743717)
chr3 (183-220)||(54087483-54087520)
chr3 (193-221)||(22405122-22405150)
chr3 (188-228)||(29019765-29019805)
chr3 (177-221)||(47334723-47334767)
[»] scaffold0294 (1 HSPs)
scaffold0294 (175-212)||(13002-13039)
[»] chr5 (13 HSPs)
chr5 (174-226)||(1100069-1100121)
chr5 (175-226)||(1098641-1098692)
chr5 (175-226)||(13391544-13391595)
chr5 (175-221)||(15968328-15968374)
chr5 (175-224)||(892564-892613)
chr5 (174-227)||(7613433-7613486)
chr5 (175-208)||(26141768-26141801)
chr5 (175-228)||(36897755-36897808)
chr5 (175-212)||(40515240-40515277)
chr5 (175-223)||(6834043-6834091)
chr5 (194-226)||(17768042-17768074)
chr5 (194-226)||(22398121-22398153)
chr5 (194-226)||(41527008-41527040)
[»] chr4 (12 HSPs)
chr4 (167-226)||(26254559-26254617)
chr4 (175-226)||(53225724-53225775)
chr4 (175-221)||(44755510-44755556)
chr4 (175-220)||(20459326-20459371)
chr4 (175-228)||(39993116-39993169)
chr4 (175-220)||(42804273-42804318)
chr4 (175-220)||(43020773-43020818)
chr4 (175-220)||(47866053-47866098)
chr4 (175-208)||(49481893-49481926)
chr4 (175-223)||(5656512-5656560)
chr4 (175-223)||(37895338-37895386)
chr4 (194-226)||(51313542-51313574)
[»] chr6 (5 HSPs)
chr6 (175-212)||(1302760-1302797)
chr6 (175-208)||(31398320-31398353)
chr6 (194-226)||(7055591-7055623)
chr6 (175-223)||(30438760-30438808)
chr6 (188-228)||(31971108-31971148)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 30 - 266
Target Start/End: Original strand, 47436451 - 47436689
Alignment:
Q  30 caaagaatcatcaaattataatgatacaatatattttttatttacatcaatccaaagtgtgcgtacttcaatctcttt--gtaaccaaaatgaaaataca 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||    
T  47436451 caaagaatcatcaaattataatgatacaatatattttttatttacatcaatccaaagtgtgcgtacttcaatctgtttttgtaaccaaaatgaaaataca 47436550  T
Q  128 ttaatgttctaacaataaaatttaaagacgtagtccatcagtctcagttataagtaaaagtttacattttagattcattcaataattaatgtatttggtt 227  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||     
T  47436551 ttaatgttctaacaataaaatttaaagacgtagtccatcggtctcagttataagtaaaagtttacattgtagattcattcaataaccaatgtatttggtc 47436650  T
Q  228 tgtattacgatctaatacattagtcattgaatgaattaa 266  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  47436651 tgtattacgacctaatacattagtcattgaatgaattaa 47436689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 39940613 - 39940567
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgtat 221  Q
    |||||||||||| ||||| ||||||||||||||||||| ||||||||    
T  39940613 ttataagtaaaaatttactttttagattcattcaataaataatgtat 39940567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 2492603 - 2492557
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgtat 221  Q
    ||||||| ||||||||||||||||||| |||||||||| | ||||||    
T  2492603 ttataagcaaaagtttacattttagatccattcaataaatgatgtat 2492557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 27545446 - 27545396
Alignment:
Q  176 tataagtaaaagtttacattttagattcattcaataattaatgtatttggt 226  Q
    |||||| | ||||| || ||||||||||||||||||| |||||||||||||    
T  27545446 tataagcataagttcactttttagattcattcaataactaatgtatttggt 27545396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 33939424 - 33939391
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattca 208  Q
    ||||||| ||||||||||||||||||||||||||    
T  33939424 ttataagcaaaagtttacattttagattcattca 33939391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 36141680 - 36141777
Alignment:
Q  168 gtctcagttataagtaaaagtttacattttagattcattcaataattaatgtatttggtttgtatta-cgatctaatacattagtcattgaatgaatt 264  Q
    |||||| ||||||| |||| || |||||||| |||| || ||||| ||||||||||||| | |||||  |||| ||||||||| | ||| ||||||||    
T  36141680 gtctcaattataagcaaaaattaacattttaaattcctttaataactaatgtatttggtctttattatagatcaaatacattaattattaaatgaatt 36141777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 43929476 - 43929431
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgta 220  Q
    ||||||| ||||||| || ||||||||||||||||||||| |||||    
T  43929476 ttataagaaaaagttaactttttagattcattcaataattgatgta 43929431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 4540728 - 4540696
Alignment:
Q  194 ttttagattcattcaataattaatgtatttggt 226  Q
    |||||||||||||||||| ||||||||||||||    
T  4540728 ttttagattcattcaatacttaatgtatttggt 4540696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 10506353 - 10506297
Alignment:
Q  167 agtctcagttataagtaaaagtttacattttagattcattcaataattaatgtattt 223  Q
    ||||||| || ||||||||| ||||| ||||||||||||| |||| || ||||||||    
T  10506353 agtctcatttttaagtaaaattttactttttagattcattgaatagttgatgtattt 10506297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 26545027 - 26545067
Alignment:
Q  188 tttacattttagattcattcaataattaatgtatttggttt 228  Q
    ||||| ||||||||||||| ||||||| |||||||||||||    
T  26545027 tttactttttagattcattaaataatttatgtatttggttt 26545067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 44746709 - 44746653
Alignment:
Q  168 gtctcagttataagtaaaagtttacatttt-agattcattcaataattaatgtattt 223  Q
    |||||| ||||||  |||| |||||||||| |||||||||||||||||||| |||||    
T  44746709 gtctcaattataaacaaaaatttacatttttagattcattcaataattaatatattt 44746653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 9793485 - 9793444
Alignment:
Q  181 gtaaaagtttacattttagattcattcaataattaatgtatt 222  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  9793485 gtaaaagtttacattttagattcattcaataactaatgtatt 9793444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 18959245 - 18959299
Alignment:
Q  166 cagtctcagttataagtaaaagtttacattttagattcattcaataattaatgta 220  Q
    ||||| ||||||||||||||| || ||||||||| |||||||||||||| |||||    
T  18959245 cagtcacagttataagtaaaatttaacattttaggttcattcaataattgatgta 18959299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 38414353 - 38414295
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgtatttggtttgtatt 233  Q
    |||||| |||||||| || |||||||||||||||||||| |||||||||| | ||||||    
T  38414353 ttataaataaaagttcactttttagattcattcaataatgaatgtatttgatatgtatt 38414295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 7258712 - 7258677
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaat 210  Q
    |||||||||||| |||||||||||||||||||||||    
T  7258712 ttataagtaaaattttacattttagattcattcaat 7258677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 8793736 - 8793787
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgtatttggt 226  Q
    ||||||||||||||| | |||||||||||||| | ||||| |||||||||||    
T  8793736 ttataagtaaaagttgatattttagattcattgagtaattgatgtatttggt 8793787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 2296601 - 2296556
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgta 220  Q
    |||||||||||| ||| ||||||||||||||||||| | |||||||    
T  2296601 ttataagtaaaattttgcattttagattcattcaattaataatgta 2296556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 12958793 - 12958838
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgta 220  Q
    ||||||| ||||||| || ||||||||||||||||||||| |||||    
T  12958793 ttataagaaaaagttaactttttagattcattcaataattgatgta 12958838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 35011229 - 35011274
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgta 220  Q
    ||||||| ||||||| |  |||||||||||||||||||||||||||    
T  35011229 ttataagaaaaagttaattttttagattcattcaataattaatgta 35011274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 42786381 - 42786426
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgta 220  Q
    ||||||| ||||||| || ||||||||||||||||||||| |||||    
T  42786381 ttataagaaaaagttaactttttagattcattcaataattgatgta 42786426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 44796359 - 44796404
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgta 220  Q
    ||||||| ||||||| || ||||||||||||||||||||| |||||    
T  44796359 ttataagaaaaagttaactttttagattcattcaataattgatgta 44796404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 2627206 - 2627238
Alignment:
Q  194 ttttagattcattcaataattaatgtatttggt 226  Q
    ||||||||||||||||||| |||||||||||||    
T  2627206 ttttagattcattcaataaataatgtatttggt 2627238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 6197953 - 6197905
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgtattt 223  Q
    ||||||| |||| ||||| |||||||| |||| ||||||||||||||||    
T  6197953 ttataagcaaaactttactttttagatacattaaataattaatgtattt 6197905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 263
Target Start/End: Complemental strand, 48873070 - 48872979
Alignment:
Q  173 agttataagtaaaagtttacattttagattcattcaataattaatgtatttggtttgtattac-gatctaatacattagtcattgaatgaat 263  Q
    ||||||||| ||||||| |  ||||| |||||||||||||||||||||||||||  ||||||| || | |||| |||||| | |||||||||    
T  48873070 agttataagcaaaagttcaatttttaaattcattcaataattaatgtatttggtcggtattactgaccaaatatattagttaatgaatgaat 48872979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 30138916 - 30138880
Alignment:
Q  174 gttataagtaaaagtttacattttagattcattcaat 210  Q
    ||||||||||||| |||||||||||||||||||||||    
T  30138916 gttataagtaaaaatttacattttagattcattcaat 30138880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 28949285 - 28949328
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatg 218  Q
    ||||||||||||||||||| |||||||||||||| || ||||||    
T  28949285 ttataagtaaaagtttacagtttagattcattcattatttaatg 28949328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 41850613 - 41850664
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgtatttggt 226  Q
    ||||||| ||||||| |  ||||||||||||| |||||||||||||||||||    
T  41850613 ttataagaaaaagttaattttttagattcattgaataattaatgtatttggt 41850664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 4826779 - 4826824
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgta 220  Q
    ||||||| ||||||| || ||||||||||||||||||||| |||||    
T  4826779 ttataagaaaaagttaactttttagattcattcaataattgatgta 4826824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 9555387 - 9555334
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgtatttggttt 228  Q
    ||||||| |||| ||||||||||||||||||||| ||| | |||||| ||||||    
T  9555387 ttataagcaaaactttacattttagattcattcattaaatgatgtatgtggttt 9555334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 22752574 - 22752619
Alignment:
Q  176 tataagtaaaagtttacattttagattcattcaataattaatgtat 221  Q
    |||||| |||| |||| |||||||||||||||||||| ||||||||    
T  22752574 tataagcaaaaatttatattttagattcattcaataaataatgtat 22752619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 27231964 - 27231919
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgta 220  Q
    ||||||| ||||||| || ||||||||||||||||||||| |||||    
T  27231964 ttataagaaaaagttaactttttagattcattcaataattgatgta 27231919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 37101708 - 37101761
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgtatttggttt 228  Q
    |||||||||||| ||| ||||||||||||||||| ||| | |||||| ||||||    
T  37101708 ttataagtaaaactttgcattttagattcattcattaaatgatgtatgtggttt 37101761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 28038607 - 28038575
Alignment:
Q  194 ttttagattcattcaataattaatgtatttggt 226  Q
    |||||||||||||||||| ||||||||||||||    
T  28038607 ttttagattcattcaatacttaatgtatttggt 28038575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 41247908 - 41247948
Alignment:
Q  194 ttttagattcattcaataattaatgtatttggtttgtatta 234  Q
    ||||||||| ||| |||||||||||||| ||||||||||||    
T  41247908 ttttagatttattgaataattaatgtatatggtttgtatta 41247948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 28249064 - 28249013
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgtatttggt 226  Q
    ||||||| ||||||| || ||||||||||||| |||||||||||||||||||    
T  28249064 ttataagaaaaagttgactttttagattcattaaataattaatgtatttggt 28249013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 5109380 - 5109431
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgtatttggt 226  Q
    ||||||| ||||||| || ||||||||||||| | |||||||||||||||||    
T  5109380 ttataagaaaaagttaactttttagattcattgagtaattaatgtatttggt 5109431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 12873740 - 12873791
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgtatttggt 226  Q
    ||||||| ||||||| || ||||||||||||| | |||||||||||||||||    
T  12873740 ttataagaaaaagttgactttttagattcattaagtaattaatgtatttggt 12873791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 5528173 - 5528218
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgta 220  Q
    |||||||||||||||||  ||||| ||||||||||||| |||||||    
T  5528173 ttataagtaaaagtttattttttatattcattcaataactaatgta 5528218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 26234151 - 26234118
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattca 208  Q
    ||||||| ||||||||||||||||||||||||||    
T  26234151 ttataagcaaaagtttacattttagattcattca 26234118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 31102076 - 31102023
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgtatttggttt 228  Q
    ||||||| |||||||| ||||||||||||||||| ||| | |||||| ||||||    
T  31102076 ttataagcaaaagtttgcattttagattcattcattaaatgatgtatgtggttt 31102023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 41153242 - 41153189
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgtatttggttt 228  Q
    ||||||| ||||||| || ||||||||||||| | ||||| |||||||||||||    
T  41153242 ttataagaaaaagttgactttttagattcattgagtaattgatgtatttggttt 41153189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 45034415 - 45034460
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgta 220  Q
    ||||||| ||||||| || ||||||||||||||||||||| |||||    
T  45034415 ttataagaaaaagttaactttttagattcattcaataattgatgta 45034460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 21970514 - 21970560
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgtat 221  Q
    |||||||||||||||||||||||| ||||||||||||| | ||||||    
T  21970514 ttataagtaaaagtttacattttatattcattcaataaatgatgtat 21970560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 21992950 - 21992996
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgtat 221  Q
    |||||||||||||||||||||||| ||||||||||||| | ||||||    
T  21992950 ttataagtaaaagtttacattttatattcattcaataaatgatgtat 21992996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 208
Target Start/End: Original strand, 336079 - 336112
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattca 208  Q
    ||||||||||||||||||||||||||||||||||    
T  336079 ttataagtaaaagtttacattttagattcattca 336112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 1755866 - 1755927
Alignment:
Q  165 tcagtctcagttataagtaaaagtttacattttagattcattcaataattaatgtatttggt 226  Q
    |||||||||||||| || |||| || |  || ||||||||||||||||||||||||||||||    
T  1755866 tcagtctcagttatcagcaaaaattcattttctagattcattcaataattaatgtatttggt 1755927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 24596904 - 24596941
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataa 212  Q
    |||||||||||| |||||||||||||||||||||||||    
T  24596904 ttataagtaaaaatttacattttagattcattcaataa 24596941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 39836992 - 39836941
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgtatttggt 226  Q
    |||||| ||||||||||| ||||||||||||||||||| | |||||| ||||    
T  39836992 ttataaataaaagtttactttttagattcattcaataaatgatgtatgtggt 39836941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 263
Target Start/End: Complemental strand, 52532787 - 52532721
Alignment:
Q  198 agattcattcaataattaatgtatttggtttgtatta-cgatctaatacattagtcattgaatgaat 263  Q
    ||||| |||||||||||||| |||||||| | |||||  |||| ||||||||||| |||||||||||    
T  52532787 agattgattcaataattaatatatttggtctttattatagatcaaatacattagttattgaatgaat 52532721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 21730196 - 21730147
Alignment:
Q  183 aaaagtttacattttagattcattcaataattaatgtatttggtttgtat 232  Q
    |||| ||||| ||||||||| ||||| ||||||||||||||||| |||||    
T  21730196 aaaactttactttttagatttattcattaattaatgtatttggtctgtat 21730147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 208
Target Start/End: Original strand, 38677578 - 38677611
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattca 208  Q
    ||||||| ||||||||||||||||||||||||||    
T  38677578 ttataagcaaaagtttacattttagattcattca 38677611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 41743717 - 41743684
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattca 208  Q
    ||||||||||||||||||||||| ||||||||||    
T  41743717 ttataagtaaaagtttacattttggattcattca 41743684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 54087520 - 54087483
Alignment:
Q  183 aaaagtttacattttagattcattcaataattaatgta 220  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  54087520 aaaagttaacattttaaattcattcaataattaatgta 54087483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 221
Target Start/End: Complemental strand, 22405150 - 22405122
Alignment:
Q  193 attttagattcattcaataattaatgtat 221  Q
    |||||||||||||||||||||||||||||    
T  22405150 attttagattcattcaataattaatgtat 22405122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 29019765 - 29019805
Alignment:
Q  188 tttacattttagattcattcaataattaatgtatttggttt 228  Q
    |||||||||||||| |||| ||||||| |||||||||||||    
T  29019765 tttacattttagatacattaaataatttatgtatttggttt 29019805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 47334767 - 47334723
Alignment:
Q  177 ataagtaaaagtttacattttagattcattcaataattaatgtat 221  Q
    |||||||||| ||||||||||||||||||||| ||| | ||||||    
T  47334767 ataagtaaaattttacattttagattcattcattaaatgatgtat 47334723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 13039 - 13002
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataa 212  Q
    |||||||||||||||||| |||||||||||||||||||    
T  13039 ttataagtaaaagtttactttttagattcattcaataa 13002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 1100069 - 1100121
Alignment:
Q  174 gttataagtaaaagtttacattttagattcattcaataattaatgtatttggt 226  Q
    |||||||| |||||||||||||||||||||||||| ||| | |||||| ||||    
T  1100069 gttataagcaaaagtttacattttagattcattcattaaatgatgtatgtggt 1100121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 1098641 - 1098692
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgtatttggt 226  Q
    ||||||||||||||| || ||||||||||||||||||| | |||||| ||||    
T  1098641 ttataagtaaaagttgactttttagattcattcaataaatgatgtatgtggt 1098692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 13391544 - 13391595
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgtatttggt 226  Q
    ||||||||||||||  || ||||||||||||||||||| | |||||||||||    
T  13391544 ttataagtaaaagtcaactttttagattcattcaataaatgatgtatttggt 13391595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 15968328 - 15968374
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgtat 221  Q
    ||||||| ||||||| |  ||||||||||||||||||||||||||||    
T  15968328 ttataagaaaaagttaattttttagattcattcaataattaatgtat 15968374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 892564 - 892613
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgtatttg 224  Q
    ||||||| |||| || || ||||||||||||| |||||||||||||||||    
T  892564 ttataagcaaaaattcactttttagattcattgaataattaatgtatttg 892613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 7613486 - 7613433
Alignment:
Q  174 gttataagtaaaagtttacattttagattcattcaataattaatgtatttggtt 227  Q
    |||||||||||||||  || ||||||||||||| ||||| | ||||||||||||    
T  7613486 gttataagtaaaagtcaactttttagattcatttaataaatgatgtatttggtt 7613433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 208
Target Start/End: Original strand, 26141768 - 26141801
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattca 208  Q
    ||||||| ||||||||||||||||||||||||||    
T  26141768 ttataagcaaaagtttacattttagattcattca 26141801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 36897755 - 36897808
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgtatttggttt 228  Q
    |||||||||||| ||||||||||| ||||||| ||||| | |||||| ||||||    
T  36897755 ttataagtaaaaatttacattttaaattcattaaataaatgatgtatgtggttt 36897808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 40515240 - 40515277
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataa 212  Q
    ||||||||||||||| || |||||||||||||||||||    
T  40515240 ttataagtaaaagttgactttttagattcattcaataa 40515277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 6834043 - 6834091
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgtattt 223  Q
    |||||||||||| ||||| ||||||||  ||| ||||||||||||||||    
T  6834043 ttataagtaaaattttactttttagatatattgaataattaatgtattt 6834091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 17768042 - 17768074
Alignment:
Q  194 ttttagattcattcaataattaatgtatttggt 226  Q
    |||||||||||||||||| ||||||||||||||    
T  17768042 ttttagattcattcaatatttaatgtatttggt 17768074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 22398153 - 22398121
Alignment:
Q  194 ttttagattcattcaataattaatgtatttggt 226  Q
    ||||||||||||| |||||||||||||||||||    
T  22398153 ttttagattcattgaataattaatgtatttggt 22398121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 41527008 - 41527040
Alignment:
Q  194 ttttagattcattcaataattaatgtatttggt 226  Q
    |||||||||||||||||| ||||||||||||||    
T  41527008 ttttagattcattcaatacttaatgtatttggt 41527040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 26254559 - 26254617
Alignment:
Q  167 agtctcagttataagtaaaagtttacattttagattcattcaataattaatgtatttggt 226  Q
    ||||||| ||||||||| | |||||| ||||| ||||||| |||||||||||||||||||    
T  26254559 agtctcaattataagtaga-gtttactttttatattcatttaataattaatgtatttggt 26254617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 53225775 - 53225724
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgtatttggt 226  Q
    ||||||| |||| || || ||||||||||||| |||||||||||||||||||    
T  53225775 ttataagaaaaaattgactttttagattcattgaataattaatgtatttggt 53225724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 44755556 - 44755510
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgtat 221  Q
    |||||||||||| ||| ||||||||||||||||| ||| ||||||||    
T  44755556 ttataagtaaaactttgcattttagattcattcattaaataatgtat 44755510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 20459371 - 20459326
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgta 220  Q
    ||||||| ||||||| || ||||||||||||||||||||| |||||    
T  20459371 ttataagaaaaagttaactttttagattcattcaataattgatgta 20459326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 39993169 - 39993116
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgtatttggttt 228  Q
    ||||||||||||  | || ||||||||||||| |||||||||||||||| ||||    
T  39993169 ttataagtaaaaaataactttttagattcattgaataattaatgtatttagttt 39993116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 42804273 - 42804318
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgta 220  Q
    ||||||| ||||||| || ||||||||||||||||||||| |||||    
T  42804273 ttataagaaaaagttaactttttagattcattcaataattgatgta 42804318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 43020773 - 43020818
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgta 220  Q
    ||||||| ||||||| || ||||||||||||||||||||| |||||    
T  43020773 ttataagaaaaagttaactttttagattcattcaataattgatgta 43020818  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 47866053 - 47866098
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgta 220  Q
    ||||||| ||||||| || ||||||||||||||||||||| |||||    
T  47866053 ttataagaaaaagttaactttttagattcattcaataattgatgta 47866098  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 208
Target Start/End: Original strand, 49481893 - 49481926
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattca 208  Q
    ||||||| ||||||||||||||||||||||||||    
T  49481893 ttataagcaaaagtttacattttagattcattca 49481926  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 5656512 - 5656560
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgtattt 223  Q
    ||||||| |||||||||||||||||||||||| ||| | | ||||||||    
T  5656512 ttataagaaaaagtttacattttagattcattaaattaatgatgtattt 5656560  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 37895386 - 37895338
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgtattt 223  Q
    ||||||| ||||||| || ||||||||||||  ||||||||||||||||    
T  37895386 ttataagaaaaagttgactttttagattcatagaataattaatgtattt 37895338  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 51313574 - 51313542
Alignment:
Q  194 ttttagattcattcaataattaatgtatttggt 226  Q
    |||||||||||||||||| ||||||||||||||    
T  51313574 ttttagattcattcaatacttaatgtatttggt 51313542  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 1302760 - 1302797
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataa 212  Q
    |||||||||||| |||||||||||| ||||||||||||    
T  1302760 ttataagtaaaaatttacattttagtttcattcaataa 1302797  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 31398353 - 31398320
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattca 208  Q
    ||||||| ||||||||||||||||||||||||||    
T  31398353 ttataagcaaaagtttacattttagattcattca 31398320  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 7055591 - 7055623
Alignment:
Q  194 ttttagattcattcaataattaatgtatttggt 226  Q
    |||||||||||||||||| ||||||||||||||    
T  7055591 ttttagattcattcaatacttaatgtatttggt 7055623  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 30438760 - 30438808
Alignment:
Q  175 ttataagtaaaagtttacattttagattcattcaataattaatgtattt 223  Q
    ||||||| ||||||| || ||||||||||||  ||||||||||||||||    
T  30438760 ttataagaaaaagttgactttttagattcatagaataattaatgtattt 30438808  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 31971148 - 31971108
Alignment:
Q  188 tttacattttagattcattcaataattaatgtatttggttt 228  Q
    |||||||||||||| |||| ||||||| |||||||||||||    
T  31971148 tttacattttagatacattaaataatttatgtatttggttt 31971108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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