View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1365_low_29 (Length: 261)

Name: NF1365_low_29
Description: NF1365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1365_low_29
NF1365_low_29
[»] chr4 (3 HSPs)
chr4 (29-261)||(53295699-53295931)
chr4 (60-122)||(34259945-34260006)
chr4 (85-121)||(45548815-45548851)
[»] chr8 (2 HSPs)
chr8 (60-122)||(33511720-33511781)
chr8 (85-121)||(43873722-43873758)
[»] chr3 (2 HSPs)
chr3 (95-124)||(41349019-41349048)
chr3 (85-121)||(47849676-47849712)
[»] chr1 (2 HSPs)
chr1 (88-121)||(36930787-36930820)
chr1 (85-121)||(39669810-39669846)
[»] chr6 (1 HSPs)
chr6 (85-121)||(11785359-11785395)
[»] chr5 (1 HSPs)
chr5 (85-121)||(38500947-38500983)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 29 - 261
Target Start/End: Complemental strand, 53295931 - 53295699
Alignment:
Q  29 aggtgtgggatgggaaagggagatgtatttcagaagagagaacaagaactttgtcccaaaaaagtttcacaaaatggttgtacaaatatcattagtcact 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||  ||| ||||||||||||||||||||||||||||||||    
T  53295931 aggtgtgggatgggaaagggagatgtatttcagaagagagaacaagaagtttgccccaaaaactttttacaaaatggttgtacaaatatcattagtcact 53295832  T
Q  129 actctattttnnnnnnnnnnntgtaggggagtgtgggaagtaattagggacgtgtagatatgcaggaagcccaagatgataatcatttaactaactgggc 228  Q
    ||||||||||           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53295831 actctattttttttttaaaaatgtaggggaatgtgggaagtaattagggacgtgtagatatgcaggaagcccaagatgataatcatttaactaactgggc 53295732  T
Q  229 cgaatttccctgaatggcccattgagttagccc 261  Q
    |||||||||||||||||| ||||||||||||||    
T  53295731 cgaatttccctgaatggctcattgagttagccc 53295699  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 34259945 - 34260006
Alignment:
Q  60 agaagagagaacaagaactttgtcccaaaaaagtt-tcacaaaatggttgtacaaatatcatta 122  Q
    ||||||||||| ||||| |||||| |||||  ||| |||| |||||||||||||||||||||||    
T  34259945 agaagagagaaaaagaagtttgtcacaaaa--gttgtcaccaaatggttgtacaaatatcatta 34260006  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 45548815 - 45548851
Alignment:
Q  85 caaaaaagtttcacaaaatggttgtacaaatatcatt 121  Q
    ||||||| | |||||||||||||||||||||||||||    
T  45548815 caaaaaattatcacaaaatggttgtacaaatatcatt 45548851  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 33511720 - 33511781
Alignment:
Q  60 agaagagagaacaagaactttgtcccaaaaaagtttcacaaaatggttgtacaaatatcatta 122  Q
    ||||||||||| |||||  |||||||||||   ||||||||||| ||||||||||||||||||    
T  33511720 agaagagagaagaagaatgttgtcccaaaagt-tttcacaaaatagttgtacaaatatcatta 33511781  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 43873722 - 43873758
Alignment:
Q  85 caaaaaagtttcacaaaatggttgtacaaatatcatt 121  Q
    ||||||| | |||||||||||||||||||||||||||    
T  43873722 caaaaaattgtcacaaaatggttgtacaaatatcatt 43873758  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 124
Target Start/End: Original strand, 41349019 - 41349048
Alignment:
Q  95 tcacaaaatggttgtacaaatatcattagt 124  Q
    ||||||||||||||||||||||||||||||    
T  41349019 tcacaaaatggttgtacaaatatcattagt 41349048  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 47849712 - 47849676
Alignment:
Q  85 caaaaaagtttcacaaaatggttgtacaaatatcatt 121  Q
    ||||||| | |||||||||||||||||||||||||||    
T  47849712 caaaaaattatcacaaaatggttgtacaaatatcatt 47849676  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 121
Target Start/End: Original strand, 36930787 - 36930820
Alignment:
Q  88 aaaagtttcacaaaatggttgtacaaatatcatt 121  Q
    ||||||||||||||||| ||||||||||||||||    
T  36930787 aaaagtttcacaaaatgattgtacaaatatcatt 36930820  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 39669846 - 39669810
Alignment:
Q  85 caaaaaagtttcacaaaatggttgtacaaatatcatt 121  Q
    ||||||| | |||||||||||||||||||||||||||    
T  39669846 caaaaaattgtcacaaaatggttgtacaaatatcatt 39669810  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 11785395 - 11785359
Alignment:
Q  85 caaaaaagtttcacaaaatggttgtacaaatatcatt 121  Q
    ||||||| | |||||||||||||||||||||||||||    
T  11785395 caaaaaattgtcacaaaatggttgtacaaatatcatt 11785359  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 38500983 - 38500947
Alignment:
Q  85 caaaaaagtttcacaaaatggttgtacaaatatcatt 121  Q
    ||||||| | |||||||||||||||||||||||||||    
T  38500983 caaaaaattgtcacaaaatggttgtacaaatatcatt 38500947  T

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