View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1365_low_34 (Length: 250)

Name: NF1365_low_34
Description: NF1365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1365_low_34
NF1365_low_34
[»] chr2 (4 HSPs)
chr2 (5-168)||(13892910-13893073)
chr2 (5-158)||(14033035-14033188)
chr2 (5-168)||(14033530-14033693)
chr2 (83-150)||(40254710-40254777)
[»] chr5 (5 HSPs)
chr5 (5-168)||(21022410-21022572)
chr5 (5-168)||(27739126-27739291)
chr5 (9-168)||(39236673-39236832)
chr5 (5-162)||(33229362-33229519)
chr5 (5-168)||(7073052-7073215)
[»] chr7 (1 HSPs)
chr7 (5-168)||(12909387-12909549)
[»] chr3 (4 HSPs)
chr3 (5-168)||(31813559-31813722)
chr3 (83-150)||(47141174-47141241)
chr3 (83-150)||(51128787-51128854)
chr3 (83-150)||(52692293-52692360)
[»] chr8 (5 HSPs)
chr8 (5-168)||(44238996-44239159)
chr8 (83-150)||(189999-190066)
chr8 (83-150)||(717603-717670)
chr8 (83-150)||(878710-878777)
chr8 (83-150)||(30984074-30984141)
[»] chr1 (3 HSPs)
chr1 (5-168)||(35604972-35605135)
chr1 (5-168)||(46406579-46406742)
chr1 (83-150)||(38843517-38843584)
[»] chr4 (3 HSPs)
chr4 (5-168)||(52058012-52058192)
chr4 (83-150)||(24037834-24037901)
chr4 (83-119)||(39382761-39382797)


Alignment Details
Target: chr2 (Bit Score: 144; Significance: 8e-76; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 5 - 168
Target Start/End: Original strand, 13892910 - 13893073
Alignment:
5 tctccaacaatatttgcttttttctacctggaaccttaaattcattcactccgctgtccacttttctcttgctagaactcaaccacccttcacaaattta 104  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||    
13892910 tctccaaccatatttgcttttttctacctggaaccttaaattcattcactccactgtccagttttctctagctagaactcaaccacccttcacaaattta 13893009  T
105 atctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 168  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
13893010 atctaaaaatttattgctattaggttatataaaaacaccacctcctgctagcaaatattgtgct 13893073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 5 - 158
Target Start/End: Original strand, 14033035 - 14033188
Alignment:
5 tctccaacaatatttgcttttttctacctggaaccttaaattcattcactccgctgtccacttttctcttgctagaactcaaccacccttcacaaattta 104  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||    
14033035 tctccaaccatatttgcttttttctacctggaaccttaaattcattcactccactgtccagttttctctagctagaactcaaccacccttcacaaattta 14033134  T
105 atctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaa 158  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
14033135 atctaaaaatttattgctattaggttatataaaaacaccacctcctgctagcaa 14033188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 5 - 168
Target Start/End: Original strand, 14033530 - 14033693
Alignment:
5 tctccaacaatatttgcttttttctacctggaaccttaaattcattcactccgctgtccacttttctcttgctagaactcaaccacccttcacaaattta 104  Q
    |||||||| ||||||| |||| ||||| |||||||||||||||||||| ||| ||||| |||||||||| ||||||||||||||||||||||||||||||    
14033530 tctccaaccatatttgattttatctacatggaaccttaaattcattcaatccactgtcaacttttctctagctagaactcaaccacccttcacaaattta 14033629  T
105 atctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14033630 atctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 14033693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 40254710 - 40254777
Alignment:
83 tcaaccacccttcacaaatttaatctaaaaatttattgctattaggttatataacaacaccacctcct 150  Q
    ||||||||||||| ||||||||||| ||||||||||| | || || ||||||||||||| || |||||    
40254710 tcaaccacccttcccaaatttaatccaaaaatttattaccatcagcttatataacaacatcatctcct 40254777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 5 - 168
Target Start/End: Complemental strand, 21022572 - 21022410
Alignment:
5 tctccaacaatatttgcttttttctacctggaaccttaaattcattcactccgctgtccacttttctcttgctagaactcaaccacccttcacaaattta 104  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||    
21022572 tctccaaccatatttgctttttt-tacctggaaccttaaattcattcactccactttccacttttctctagctagaactcaaccacccttcacaaattta 21022474  T
105 atctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
21022473 atctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 21022410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 5 - 168
Target Start/End: Complemental strand, 27739291 - 27739126
Alignment:
5 tctccaacaatatttgcttttttctacctggaaccttaaattcattcactccgc--tgtccacttttctcttgctagaactcaaccacccttcacaaatt 102  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||| | ||||||||||||||||||||||||||    
27739291 tctccaaccatatttgcttttttctacctggaaccttaaattcattcactccacactgtccacttttctctagttagaactcaaccacccttcacaaatt 27739192  T
103 taatctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27739191 taatctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 27739126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 39236832 - 39236673
Alignment:
9 caacaatatttgcttttttctacctggaaccttaaattcattcactccgctgtccacttttctcttgctagaactcaaccacccttcacaaatttaatct 108  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||| ||||||| ||||||||||||||||| |||    
39236832 caaccatatttgcttttttctacctgaaaccttaaattcattcactccactgtccacttttctctagctataactcaatcacccttcacaaatttactct 39236733  T
109 aaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
39236732 aaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 39236673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 5 - 162
Target Start/End: Original strand, 33229362 - 33229519
Alignment:
5 tctccaacaatatttgcttttttctacctggaaccttaaattcattcactccgctgtccacttttctcttgctagaactcaaccacccttcacaaattta 104  Q
    |||||||| ||||||| |||| ||||||||||||||||||||||||| |||| ||||| |||||||||| ||||||||||||||||||||||||||||||    
33229362 tctccaaccatatttgtttttctctacctggaaccttaaattcattcgctccactgtctacttttctctagctagaactcaaccacccttcacaaattta 33229461  T
105 atctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatat 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33229462 atctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatat 33229519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 5 - 168
Target Start/End: Complemental strand, 7073215 - 7073052
Alignment:
5 tctccaacaatatttgcttttttctacctggaaccttaaattcattcactccgctgtccacttttctcttgctagaactcaaccacccttcacaaattta 104  Q
    |||||||| ||||||||||||||||||| | ||| |||||||||||||||    ||||||||||||||| ||||||||||||||||||||||||||||||    
7073215 tctccaaccatatttgcttttttctacccgtaacgttaaattcattcactttagtgtccacttttctctagctagaactcaaccacccttcacaaattta 7073116  T
105 atctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 168  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
7073115 atctgaaaatttattgctattaggttatataacaacaacacctcctgctagcaaatattgtgct 7073052  T

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Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 5 - 168
Target Start/End: Original strand, 12909387 - 12909549
Alignment:
5 tctccaacaatatttgcttttttctacctggaaccttaaattcattcactccgctgtccacttttctcttgctagaactcaaccacccttcacaaattta 104  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||    
12909387 tctccaaccatatttgcttttttctacttggaaccttaaattcattcaatccactgtccacttttctctagctagaactcaaccacccttcacaaattta 12909486  T
105 atctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
12909487 atctaaaaatttattgctattaggttatataacaacaccacctcc-gctagcaaatattgtgct 12909549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 5 - 168
Target Start/End: Original strand, 31813559 - 31813722
Alignment:
5 tctccaacaatatttgcttttttctacctggaaccttaaattcattcactccgctgtccacttttctcttgctagaactcaaccacccttcacaaattta 104  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
31813559 tctccaaccatatttgcttttttctacctgaaaccttaaattcattcactccactgtccacttttctctagctagaactcaaccacccttcacaaattta 31813658  T
105 atctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 168  Q
    |||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||    
31813659 atctaaaaatttgttgcaattaggttatataacaacaccacctcctactagcaaatattgtgct 31813722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 47141241 - 47141174
Alignment:
83 tcaaccacccttcacaaatttaatctaaaaatttattgctattaggttatataacaacaccacctcct 150  Q
    ||||||||||||| ||||||||||| ||||||||||| | || || ||||||||||||| || |||||    
47141241 tcaaccacccttcccaaatttaatccaaaaatttattaccatcagcttatataacaacatcatctcct 47141174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 51128854 - 51128787
Alignment:
83 tcaaccacccttcacaaatttaatctaaaaatttattgctattaggttatataacaacaccacctcct 150  Q
    ||||||||||||| ||||||||||| ||||||||||| | || || ||||||||||||| || |||||    
51128854 tcaaccacccttcccaaatttaatccaaaaatttattaccatcagcttatataacaacatcatctcct 51128787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 52692293 - 52692360
Alignment:
83 tcaaccacccttcacaaatttaatctaaaaatttattgctattaggttatataacaacaccacctcct 150  Q
    ||||||||||||| ||||||||||| ||||||||||| | || || ||||||||||||| || |||||    
52692293 tcaaccacccttcccaaatttaatccaaaaatttattaccatcagcttatataacaacatcatctcct 52692360  T

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Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 5 - 168
Target Start/End: Original strand, 44238996 - 44239159
Alignment:
5 tctccaacaatatttgcttttttctacctggaaccttaaattcattcactccgctgtccacttttctcttgctagaactcaaccacccttcacaaattta 104  Q
    |||||||| ||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||  ||||||||||||||||    
44238996 tctccaaccatatttgtttttttctgcctggaaccttaaattcattcactccactgtccacttttctctagctagaactcaattacccttcacaaattta 44239095  T
105 atctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
44239096 atctaaaaatttattgctattaggttatataacaacaccacctcctcctagcaaatattgtgct 44239159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 189999 - 190066
Alignment:
83 tcaaccacccttcacaaatttaatctaaaaatttattgctattaggttatataacaacaccacctcct 150  Q
    ||||||||||||| ||||||||||| ||||||||||| | || || ||||||||||||| || |||||    
189999 tcaaccacccttcccaaatttaatccaaaaatttattaccatcagcttatataacaacatcatctcct 190066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 717603 - 717670
Alignment:
83 tcaaccacccttcacaaatttaatctaaaaatttattgctattaggttatataacaacaccacctcct 150  Q
    ||||||||||||| ||||||||||| ||||||||||| | || || ||||||||||||| || |||||    
717603 tcaaccacccttcccaaatttaatccaaaaatttattaccatcagcttatataacaacatcatctcct 717670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 878710 - 878777
Alignment:
83 tcaaccacccttcacaaatttaatctaaaaatttattgctattaggttatataacaacaccacctcct 150  Q
    ||||||||||||| ||||||||||| ||||||||||| | || || ||||||||||||| || |||||    
878710 tcaaccacccttcccaaatttaatccaaaaatttattaccatcagcttatataacaacatcatctcct 878777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 30984141 - 30984074
Alignment:
83 tcaaccacccttcacaaatttaatctaaaaatttattgctattaggttatataacaacaccacctcct 150  Q
    ||||||||||||| ||||||||||| ||||||||||| | || || ||||||||||||| || |||||    
30984141 tcaaccacccttcccaaatttaatccaaaaatttattaccatcagcttatataacaacatcatctcct 30984074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 5 - 168
Target Start/End: Original strand, 35604972 - 35605135
Alignment:
5 tctccaacaatatttgcttttttctacctggaaccttaaattcattcactccgctgtccacttttctcttgctagaactcaaccacccttcacaaattta 104  Q
    |||||||  ||||||||||||||||||||||||| ||||||||||||||| | |||| ||||||||||| ||||||||||||||||||||||||||||||    
35604972 tctccaatcatatttgcttttttctacctggaacgttaaattcattcacttcactgttcacttttctctagctagaactcaaccacccttcacaaattta 35605071  T
105 atctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 168  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35605072 atctgaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 35605135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 5 - 168
Target Start/End: Original strand, 46406579 - 46406742
Alignment:
5 tctccaacaatatttgcttttttctacctggaaccttaaattcattcactccgctgtccacttttctcttgctagaactcaaccacccttcacaaattta 104  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||| ||| || ||||||||||||| ||||||||||||||||||||||||||||||    
46406579 tctccaaccatatttgcttttttctacctgaaaccttaaattcattcagtccactatccacttttctctagctagaactcaaccacccttcacaaattta 46406678  T
105 atctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 168  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
46406679 atctaaaaatttattgctattaagttatataacaacaccacctcttgctagcaaatattgtgct 46406742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 38843517 - 38843584
Alignment:
83 tcaaccacccttcacaaatttaatctaaaaatttattgctattaggttatataacaacaccacctcct 150  Q
    ||||||||||||| ||||||||||| ||||||||||| | || || ||||||||||||| || |||||    
38843517 tcaaccacccttcccaaatttaatccaaaaatttattaccatcagcttatataacaacatcatctcct 38843584  T

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Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 168
Target Start/End: Complemental strand, 52058192 - 52058012
Alignment:
5 tctccaacaatatttgcttttttctacctggaaccttaaattcattcactccgctgtccacttttctcttgctagaactcaaccacccttcacaaattta 104  Q
    |||||||| |||||||||||||||||| || ||| ||||||||||||||| | |||| ||||||||||| |||| |||||||||||||||||||||||||    
52058192 tctccaaccatatttgcttttttctacttgaaacgttaaattcattcacttcactgttcacttttctctagctataactcaaccacccttcacaaattta 52058093  T
105 -----------------atctaaaaatttattgctattaggttatataacaacaccacctcctgctagcaaatattgtgct 168  Q
                     |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
52058092 atctgaaaataaatttaatctgaaaatttattgctattaggttatataacaacaccacctcctactagcaaatattgtgct 52058012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 24037901 - 24037834
Alignment:
83 tcaaccacccttcacaaatttaatctaaaaatttattgctattaggttatataacaacaccacctcct 150  Q
    ||||||||||||| ||||||||||| ||||||||||| | || || ||||||||||||| || |||||    
24037901 tcaaccacccttcccaaatttaatccaaaaatttattaccatcagcttatataacaacatcatctcct 24037834  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 39382797 - 39382761
Alignment:
83 tcaaccacccttcacaaatttaatctaaaaatttatt 119  Q
    ||||||||||||| ||||||||||| |||||||||||    
39382797 tcaaccacccttcccaaatttaatccaaaaatttatt 39382761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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